Array 1 108119-106276 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGQ01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033862 CFSAN033862_contig0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108118 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108057 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107996 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107935 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107874 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107813 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107751 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107690 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107629 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107568 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107507 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107446 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107385 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107324 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107263 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107202 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107141 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107080 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107019 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106957 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106854 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106793 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106732 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106671 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106610 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106549 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106488 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106427 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106366 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106305 29 96.6 0 A............................ | A [106278] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125744-124251 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVGQ01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033862 CFSAN033862_contig0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125743 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125682 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125621 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125560 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125499 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125438 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125377 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125316 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125255 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125194 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125133 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125072 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125011 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124950 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124889 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124828 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124766 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124705 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124644 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124583 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124522 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124461 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124400 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124339 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124278 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //