Array 1 2162-3039 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSCR01000004.1 Ligilactobacillus salivarius strain 01M14315 01M14315_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 2162 36 100.0 30 .................................... GTCAAGCCCGTTCATACGTCCAAGCCTTTC 2228 36 100.0 30 .................................... CATTGCAGCTAAAGGAATCGTCAGATTGTA 2294 36 100.0 30 .................................... AACAACACAAGTAACTGATGTAAAGGACAA 2360 36 100.0 31 .................................... CGTGGATTATCAGGATTATTCAAGAAAATAC 2427 36 100.0 30 .................................... TTTCAGTTGCTTTCCCCATAGTTACATTTG 2493 36 100.0 30 .................................... AGCCCCAGGTTCCTAATAATCCAACAACAC 2559 36 100.0 30 .................................... TTCAGGGACAGTATACGGACAAGGGTATCA 2625 36 100.0 30 .................................... AGCAACTTTGACTAAACAAGTTATGCAATT 2691 36 100.0 30 .................................... GTCAAAGAGTTCAAAACAGTTCCATCATAC 2757 36 100.0 30 .................................... TTATATTTATCTTTGTTAGCAACGGCATAT 2823 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 2888 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 3004 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 13 36 97.0 34 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 20770-21709 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSCR01000017.1 Ligilactobacillus salivarius strain 01M14315 01M14315_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 20770 36 100.0 38 .................................... AGTTTCGTATTCTTTGACATATTTGATCACCCCCTTTT 20844 36 100.0 35 .................................... TTTGCATTTTAATTAATTGATTCATGTTTACTTCC 20915 36 100.0 42 .................................... TGTTTCGTTCCCAGCTTGCCTGGTATCCAATCGAAGGTTATC 20993 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 21071 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 21148 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 21220 36 100.0 38 .................................... ACTCAGTGTACCAAACTTGTAAGTATCTGATACCTACT 21294 36 100.0 39 .................................... GATTTATTTAGTTTTAAAAAGAACTGTTTTTGTACCGCC 21369 36 100.0 37 .................................... GACTTGATCGAACAACTTTATTAAATCATAAGCACTT 21442 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 21520 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 21597 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 21673 35 88.9 0 ............................-....TCT | TT [21703] ========== ====== ====== ====== ==================================== ========================================== ================== 13 36 98.5 39 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCCGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //