Array 1 580708-581468 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDE01000003.1 Escherichia albertii strain Esc18014 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 580708 29 100.0 32 ............................. TAATATCGCCAGATTCCAGAAGATATGGTCCA 580769 29 100.0 32 ............................. TCTGATATTCAGGATGGACCATATCTTCTGGA 580830 29 100.0 32 ............................. AGCAAGTGGCGGCATCTTTGCAGAACAGTAAC 580891 29 100.0 32 ............................. ATAGTTACGGCGTACCAATTAACGCTAATAAC 580952 29 96.6 32 ............................C GACCAGGTAGCGGATTCCTCTGTTGCCGTTGC 581013 29 100.0 32 ............................. CCTGGACGCACAGGAAAAACAGGACAAAACCA 581074 29 100.0 32 ............................. ATTATGCGCGCTACGGAGATATTTGGGCCTAT 581135 29 100.0 32 ............................. GAATCGAACCATCATCGCTTGCGCAATGGGAC 581196 29 100.0 32 ............................. GGATTCGAACCCCTATTAACAGTTTCGTAGAC 581257 29 100.0 32 ............................. GTTAGAGCTACTAACTTAGATAGTTTGATTGA 581318 29 100.0 32 ............................. CCAAGATGGTTTTTGAGGTTTACGGAAAATGG 581379 29 96.6 31 .............C............... GACTCGCAATCGCCGGAAGACGCGATCAGTT 581439 29 93.1 0 .............C..............A | A [581441] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.9 32 GGGTTCCCCGCGTTAGCGGGGATAAACCG # Left flank : CTGGATGAGCTATTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAAACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAACTCCTCCATTTTGCCTATCCGGGACTAATCATTGCCATTCTCTACAAATTCTGTGGCGTTAATTCTTTGTTGGAATGAAAATTATTGCGGTAGAGTTTGGTAGATTTTAGTTTGTATAGAATCACTTTAAATATTTAACTTTTCACTCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATACAGTTGCGTTCAGGCCGGGCAGTTTCCCGCCCGGTTTTCCTCATTTAGGCATTCGACCAGCTCTGGATTGAATCCGCATTCCCTAACTCACCATGCATCACTTCATACGATTTTTTCAGAATCACATCGGTGTGTTTGGTTAGGTCTTTGAAAATGCCCTTATTCATTGCGTCGTAGCGTTTGGCATTGCTCTCAACAGGCATAAAGACATCTTTCACGCGAACCATTTTGTCGACAGCCGTTGCGTAATCTGGGTATAACCCCAGTCCTACCGTCGTATTGATCGCCGCTCCCAGGCTTGCACAGCCGTTAATGGCGTTACGTCGTGCCGGAAGGTTGAACACATCGGCAAAAATCTGCATAAACAGATCGCTGTTCGAACCGCCGCCAGTAATGATTACATGCTTCGCAAAGTGATTCATTTCATTACACATATTGTCGTAATTATTCTTCAGCGTCAGCGCCACGCTTTCCAGAATCGAACGATAAATCCAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGTTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 607918-608923 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDE01000003.1 Escherichia albertii strain Esc18014 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 607918 29 100.0 32 ............................. GATCTGACGTTTGTCGCACAGGATTTATCAGC 607979 29 100.0 32 ............................. GGACTTTGTATGCTGGCTTATAATCGAACTTT 608040 29 100.0 32 ............................. TTGGCGTGTGGGATTGCGGAATGGTTCATCAT 608101 29 100.0 32 ............................. GTGATGTGACATTGATCCATACAGTGACGAAA 608162 29 100.0 32 ............................. GCCCCATGTCTGTTTAAAGCGGTATATCGTCC 608223 29 100.0 32 ............................. TTAGCGAGGATAACAGGAAGCGTGATGTTATG 608284 29 100.0 32 ............................. CTTGACGGTAAAGAAGTGCGCTTCGTGTGCCA 608345 29 100.0 32 ............................. CGTGCCGACGCAACGGCAACCGCTTTTGGTAA 608406 29 100.0 32 ............................. GTCTTACCCGGGGTTACGTCAGCGCCGTAATG 608467 29 100.0 32 ............................. CCTTCGATCACGGCTTTCATCAACTCGACCTG 608528 29 100.0 32 ............................. GGTACAGTAGTGATGATGTCCGCGATTTTGAC 608589 29 100.0 32 ............................. AACGCACCGTTCTTCAACATTCTGCACACAAC 608650 29 100.0 32 ............................. GGTGGCTTGCTAGTTACCCAGCGGATGCAGTA 608711 29 100.0 32 ............................. GTAATTAGGGATGAGTCGGCTAAAATTATACG 608772 29 100.0 32 ............................. ATGTATTTCAAAGAAGTTGAAAGCATCACTCC 608833 29 100.0 32 ............................. CACGGCAGGCCATTTCAAACACCTGTTGTTCT 608894 29 86.2 0 ........................TCTG. | A [608915] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCCGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACTTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTTGTTGGTAGATTGTTGATGTGGAATAAACTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCTTCTATTTTCAAACTCATCAGGACGCCTTTGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAATGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTCGCTTCAACGGAAAGTACAGCAATACCCGCTTTGTCGAAAACTTCTGCATCATTACAACATCCAGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGTTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95809-95541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDE01000001.1 Escherichia albertii strain Esc18014 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95808 28 100.0 32 ............................ GCATAGACAACACAGACCGTCATCGCGCTGGA 95748 28 100.0 32 ............................ TTTGTGACGTACTGGCGACAATGGTTTATCAG 95688 28 100.0 32 ............................ ACACGCAAGCTGAAAAAAATCGGTAAAGCGGA 95628 28 100.0 32 ............................ GACAAAATGCGATAGTTTGACAATGTGTCATG 95568 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCATCCCCCCGGATGTGTGCAACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCCTAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTTAACACACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTCTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAATAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGAGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 110850-110460 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDE01000001.1 Escherichia albertii strain Esc18014 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110849 28 100.0 33 ............................ AACAGCAGCAAATGATGACAACTATGAATTCAT 110788 28 100.0 32 ............................ TACATTTAAACAGGTACTTATAATGATGTGAT 110728 28 100.0 32 ............................ CTGGCGCTACCGCTCACGCGTCGACGCTCACT 110668 28 100.0 32 ............................ TGAACCCGCGCGTTTCGACCCGGTTTGCGGAC 110608 28 96.4 32 ........T................... TGGAAATCATGAGCAGCCCCGCAGACACGAAC 110548 28 100.0 32 ............................ GACTGGTTTAAACAGCGCTACGGCCAGATGTT 110488 28 92.9 0 ....................T...C... | C [110465] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAGAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGCGAAAAAAAATGCCTGATGCGCTGCGCTTATCAGGCCTACAAGGTTCGTGCAATCTATTGAATTTGCATGATTTTGTAGATTGGGTAAGGTGAATGTGCCGCATTCGACATAAACAAATCGCACGTTGTTAACAATCTGAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTTGCGCTTCGACGGAGCAGATGTGACCTTTTTTTGCGGGGGTGACGTAATTTATTGATAAAACTATGCGCAGGGATGTAGGGATAAAAAAGGGTCTGAGCGGGGAGTATTGATGGTTTCGCTTTATTAACAACGGACTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCTTCAGTACACAATAACAATCGTAATAATTGCGACGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCATTGATGTTGGGGATGGGAACATCCGTGACTCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //