Array 1 24576-25023 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRKT01000038.1 Pseudomonas aeruginosa isolate 175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24576 28 100.0 32 ............................ TCGATCAGACGACCGTAGGTGCGCAGGCCTTC 24636 28 100.0 32 ............................ ACTACCGACAACGCCAGGGCGTAAAGCTGCGG 24696 28 100.0 32 ............................ AACTGGTGTTCTTCGGGAACCAAGTCGGCAAC 24756 28 100.0 32 ............................ AATGCCGAACCGCTGCAGCCAGGTATCGGGCC 24816 28 100.0 32 ............................ AGGGGCATTTCCTGATCATCCGAGGAGATCGC 24876 28 100.0 32 ............................ ACGACGGCCGCCTTGCGGATCTCGGCAGCGGA 24936 28 100.0 32 ............................ TCCTGGTCGTCCTGCGCTCGTACGGCCATGGC 24996 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACACCCTAGGCTTCGCATAATGTGCAGACGTTGTTCACTGCCGTATAGTGTAGTGGTCAACCCATCCCGGACAGTGGGTTGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5857-6801 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRKT01000055.1 Pseudomonas aeruginosa isolate 175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5857 29 100.0 32 ............................. ACCAGCCTTCAACCCCTCTAGGTCTGCGGAAT 5918 29 100.0 32 ............................. TCCGTCAGTTGACCCGGCGACGGCGATTGAGC 5979 29 100.0 32 ............................. ATGGAGGCCTTCCGCGGGGGCGGCATGAACGG 6040 29 100.0 32 ............................. TTCACAGACCAGGGAGATTCAGTGCTTGACCC 6101 29 100.0 32 ............................. CTGTAGGTGGTGACATCGTCGTACGGCGCGGA 6162 29 100.0 32 ............................. GCAGTGACCGCCGCCGGCCTGGACCTGGTCCG 6223 29 96.6 32 ..........T.................. TCGGGTATAGGTGATACCCGACTTTTGTCTCA 6284 29 96.6 32 ..........................T.. CCCCCAGTTTGGGGGCTTTCTTTTTGGCAAAA 6345 29 100.0 32 ............................. CGGGTTACCGGTGGCGTATGTAGTCATGCTAA 6406 29 100.0 32 ............................. GTACTGCTCCCGAGCCTGCTGCCAACGGTAGT 6467 29 100.0 33 ............................. TCCGCCGACATCGACCACCCCAACGATGCTGCG 6529 29 100.0 32 ............................. GCGGCAGCCTCCCTGATCGCGTAGAAAACGCC 6590 29 100.0 32 ............................. CCGAGATGTGGCGCCGAAACGAGCGCGAGCGC 6651 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 6712 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 6773 28 79.3 0 A..........A..C..-.....A....T | C [6777] ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAACATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15975-17224 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRKT01000055.1 Pseudomonas aeruginosa isolate 175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15975 29 100.0 32 ............................. ATCGCGCCGAGCGCGGCGCCCCAGAGGTCCGT 16036 29 100.0 32 ............................. CTCGACGCCGAGGGCCGGCTGCCACGTGACCC 16097 29 100.0 32 ............................. TGACCAGACGTCGAGCAATTCGAACCGGCGGC 16158 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 16219 29 100.0 32 ............................. ACGCATATATGAGCCGCAAAGGTACAGAATCT 16280 29 100.0 32 ............................. CCGAGCAGCAATGCCGCGACGGCGAGATCGTA 16341 29 100.0 32 ............................. CCACTTCGACATCTGCCTCAGCAAGAAGGCGA 16402 29 100.0 32 ............................. ATGTGCCACATGTTCGCGGATAGCGATGCCGA 16463 29 100.0 32 ............................. CTCTCCCACACCTCGGCATTGCCGAGCGCATC 16524 29 100.0 32 ............................. GTGGCAGGATGAAGCCGGCGCCGGCCGACTCG 16585 29 100.0 32 ............................. TCGGAATACTCCTGGGCGTCCTTACCAGGGAA 16646 29 100.0 32 ............................. GAGGCGCTGAAGCACGTAATCCCGGATACCAA 16707 29 100.0 33 ............................. TTCATCGGTGATACTGAAGCTAATGCTGCTGTG 16769 29 100.0 32 ............................. TATCCGGACTGGCGGCGACCGATTCCGCTCGA 16830 29 100.0 32 ............................. CAGGCCTGAACCAGTCCGAGCTAGCCCGGCGC 16891 29 100.0 32 ............................. TCCGCCGCGTGCTGCGCGATGACGGCACGCTG 16952 29 100.0 32 ............................. CAAACTGCCCATGTGTGGCGGGGTCGGGTGAA 17013 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 17074 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 17135 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 17196 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAAGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //