Array 1 1817572-1820431 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOI01000001.1 Legionella pneumophila strain NCTC11984, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 1817572 32 100.0 33 ................................ CAGTAAGGACAAGACACAATATCACTTAAGTAA 1817637 32 100.0 36 ................................ AGGGGCGCTTTTTCTTTTGCCGACGGCTCTATAGTA 1817705 32 100.0 35 ................................ AAAGCACGTGCAACAGTACCATAAACAGTTTCATC 1817772 32 100.0 35 ................................ AAAACGAGTACGAATAGCATCAACAGCAGAAGAAA 1817839 32 100.0 34 ................................ TGAATTTGAAACGCCTCTCGCAACTGATTAATAG 1817905 32 100.0 33 ................................ TAATAAATTAGATTATATAGCTAGAGCTTTAGG 1817970 32 100.0 35 ................................ CGTCTTGATGGAGCTTACGGCGGTTGGAAACTTGT 1818037 32 100.0 35 ................................ TATGATTTCATCAATTGTTAGCATTTTCTAACTCC 1818104 32 100.0 35 ................................ AGAAAACTTGTCTATTAGTGGTAGTGCTGCTGGAC 1818171 32 100.0 34 ................................ ATGTTTCACCTCATAGCCTAAAAAGTTTAATTCA 1818237 32 100.0 36 ................................ ACAGATTACCCAGCATTTAATGGCTTTCTTAAATCG 1818305 32 100.0 35 ................................ TTATAGGTAATAAAACACCTGATGGTGCAATTATA 1818372 32 100.0 36 ................................ CTCAGTGACTGTGTCACCGGCGTAACGCTCTAAGAT 1818440 32 100.0 36 ................................ CTGATGTTTATGCTGATTTGTCAAATGCTACTGCTG 1818508 32 100.0 35 ................................ AGATAACTTAGATTTTAAGCGTCTATATTTAACTG 1818575 32 100.0 34 ................................ CGCTGCCGGGAGCTTAGTCTTAGATGTCGGAGAA 1818641 32 100.0 38 ................................ CCCCCTCTGTCCTGCATACTTTGATATTTTTACCCATC 1818711 32 100.0 35 ................................ AGCTAATGACCTAGTTAATGTATCTATTATTTTCT 1818778 32 100.0 34 ................................ ACACCATACTCTCCACAATGATAATAACGAATAC 1818844 32 100.0 35 ................................ ATGTTGAATTGGCCAGCGATAACGTAACAATTACA 1818911 32 100.0 36 ................................ AAGTATTTCTGTTTTACTAGGTTTCGGTATAGTTTC 1818979 32 100.0 36 ................................ AAAATGAGGCTTTGGCTGGTGTAGCTGTAATAGGTG 1819047 32 100.0 43 ................................ ACAAATATAATAAATTAGCCTGGGAATGGCGAGTTTGGGACAC 1819122 32 100.0 34 ................................ GGTTTTCCAGCCGCATGGTTTTCTCTGGCCAGTC 1819188 32 100.0 35 ................................ ACGTTCAGTAATAAACTTGGCTCTTTCCGTCGGGG 1819255 32 100.0 42 ................................ TGCATTTATTACTGAGGCGGGGAAAAGATAATGGCAAATCAC 1819329 32 100.0 35 ................................ GGAAGGACAAATAAATGAGCCTAATGAATACATTG 1819396 32 100.0 35 ................................ ACAAGTAAAGTTTAAAGATGAGCTTGTCTATATTT 1819463 32 100.0 35 ................................ TGCTGTGTATAGGCGAGAACCTACACTCATAATTG 1819530 32 100.0 35 ................................ ATAATATAACGAGCAACATAAGCAGCAGAATTAAA 1819597 32 100.0 34 ................................ AAATTAAAAGTATCACCAGGTAAAGCTTCATCAA 1819663 32 100.0 34 ................................ TCCTGAATAAACGATGAATTAAGAACAGGCAAAG 1819729 32 100.0 35 ................................ CTGAATCGTTGGCTGAAGATCATATATTAAGTTGG 1819796 32 100.0 34 ................................ CAACTAAGACAAATGATAAAGGCGAAACAAGAGT 1819862 32 100.0 36 ................................ CAATATATCACTGGGCAATAAATACTCAATTTTATG 1819930 32 100.0 35 ................................ TTAAAATCTCTACGCAATATATTGCCCTGCGTATC 1819997 32 100.0 37 ................................ AGATTATAAAAACATTAAAATAATAAATGGCACTATT 1820066 32 100.0 35 ................................ TATTTATGTTGTTTGTGATGATTTACAGGTGGGTG 1820133 32 100.0 34 ................................ ATTCCATTGTTCGGGTGTTATCGGGTCTGCATTA 1820199 32 100.0 35 ................................ ATGTGCGAATAAAGAAAATAGTAAATGCCATATGT 1820266 32 100.0 35 ................................ ATGCCTGTTGTTAAGACAAAATGGAAAGTTGTAGA 1820333 32 100.0 35 ................................ AGGAATAGCAATTGTGTCAAATAGAAAAGTAGACG 1820400 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ =========================================== ================== 43 32 99.8 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : CACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //