Array 1 578959-580024 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSEB010000001.1 Klebsiella pneumoniae strain Kpngiani7132488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 578959 28 100.0 33 ............................ CGTAACTTTGTTTTTCTCATCCACGCTGAAGTG 579020 28 100.0 33 ............................ TCATGTTGTGGAGCGATATACAGGCTGCATGCG 579081 28 100.0 33 ............................ CAGGTAAGAGCATTGTCAGGTAGCTTCAGGGGA 579142 28 100.0 33 ............................ CCTTTTTCAGTAATCTTCCAGAAAGTTTCATGA 579203 28 100.0 33 ............................ TGAAGTGGTTCCACGCATCCACAATATTTGTGA 579264 28 100.0 33 ............................ TCATTCAGGTCATTAGATGGAATTGGCTTGTTA 579325 28 100.0 33 ............................ CTTCGAGTTAAACATTTTTGACGGTGTTAATGT 579386 28 100.0 33 ............................ CAGGTAAGAGCATTGTCAGGTAGCTTCAGGGGA 579447 28 100.0 33 ............................ TATGGGTTGCAGTGTAAGAGCGGCAAACGAAGC 579508 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 579569 28 96.4 33 .............G.............. TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 579630 28 96.4 33 .............G.............. CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 579691 28 96.4 33 .............G.............. TATCGTGCAGAGTCACAACCTGACGGGATTATC 579752 28 96.4 33 .............G.............. TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 579813 28 96.4 33 .............G.............. TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 579874 28 96.4 33 .............G.............. CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [579879] 579936 28 89.3 33 ............TGT............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 579997 28 85.7 0 ............TG.....A.......T | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.4 33 GTCTTCCCCACACACGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAATTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 588776-590450 **** Predicted by CRISPRDetect 2.4 *** >NZ_CACSEB010000001.1 Klebsiella pneumoniae strain Kpngiani7132488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 588776 28 100.0 33 ............................ TGCACCAGGTAAATTGCTTGGCACGAATACTCC 588837 28 100.0 33 ............................ CTGTACCAGAAACGTTTTCTATATTTAGAACGT 588898 28 100.0 33 ............................ TGAGCACCGAGATATCATCATCGCAACAGGACT 588959 28 100.0 33 ............................ CACTTATTTCCAGATTGTGGATAATGAGGCGCT 589020 28 100.0 33 ............................ CACCACGGATAGTTGGCTGAGAGGCCGAAAGCA 589081 28 100.0 33 ............................ CTCGACCCGCTTGAGCGTGCAAAGGCTTATTTG 589142 28 100.0 33 ............................ CCAGAAGCTACAGGAAGAAGCGGCAAGGCTTGA 589203 28 100.0 33 ............................ CGTTATTGATGCCGCCGTTGAGGAAGCGAAAGC 589264 28 100.0 33 ............................ CCCGCCGAAGCGGGTTAAAGGGTGGTGGGTGAT 589325 28 100.0 33 ............................ TTGGATAAACCTGAGAACAGATATGGGTTGTCG 589386 28 100.0 33 ............................ TAACTGTTATTCCAATGAGGATTTAGTGATGAA 589447 28 100.0 33 ............................ CCACCCGAACACCGTGCAGCTCAACCTGAGCAC 589508 28 100.0 33 ............................ TTTGCAACAATATACCACTTCCCGACCTTTGAT 589569 28 100.0 33 ............................ TAGGTTTTTGTTGTCTGATTGAATGGGTTGTCA 589630 28 100.0 33 ............................ TGCTTCTATTAACCTGTTTCTGTAGCTTAAACC 589691 28 100.0 33 ............................ TATTAATGCTTACGTTTCGTGGTTTGAGGATGA 589752 28 100.0 33 ............................ CGTCGTGAATTACGGCAATACGCTGGACCGCAA 589813 28 100.0 33 ............................ CAGTACCGCCAGCAGCGCCTTGATGCCATGTGG 589874 28 100.0 33 ............................ TTAACTATGCAGCGTAACCGTGCTTTCGTCTCA 589935 28 100.0 33 ............................ CTGCAAAAGCAAAATGTTGCTCTGTCAGGTGCA 589996 28 100.0 33 ............................ TATCAATCTCTGAAATCATTTTGTCTATTTTGT 590057 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 590118 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 590179 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 590240 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 590301 28 100.0 33 ............................ CATTCGAGTCAGTAAAAGCGTCTAGTGCTGACG 590362 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 590423 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : CCTTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTG # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //