Array 1 46347-47211 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXQ01000005.1 Acinetobacter sp. 10FS3-1 NODE_5_length_178838_cov_42.420153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46347 28 100.0 32 ............................ GACTAAACGTAGATTTTTTAAGTAATATTCAA 46407 28 100.0 32 ............................ CGAAACATGCAATTTGAGGGCTTCTGCGCGCA 46467 28 100.0 32 ............................ ATGAAAATTTGATGGCTGTTTGATGATTGGGA 46527 28 100.0 32 ............................ GGATGAACAAACATGCTTTTCAATTACTGCAA 46587 28 100.0 32 ............................ CATATGATTGTTTATATCGTTCCGTTTGACGA 46647 28 100.0 32 ............................ TTAAAAGCATTTAAAAGCTTTTCTTTTATTAA 46707 28 100.0 32 ............................ AGCAGAAAAAGCAGAAAGGAAAATAGCACTAG 46767 28 100.0 32 ............................ CCCCCTTTCTGCAACGTCACCCCCTTTTGTCT 46827 28 100.0 33 ............................ ATGCAATTATTAATTCATACAAACGGATTGCAT 46888 28 100.0 33 ............................ TTATGCTTGGTGGACAGCAATTTGTTTTACTTG 46949 28 100.0 32 ............................ TTTTGCCTGGTACACATACTTAACCTGGGCCA 47009 28 100.0 32 ............................ AGGGGCCAGCCGAACAAATTAAATTAGCAAGA 47069 28 96.4 32 .......................T.... GTCAAAAGTTATGGAAAAGTTTTGAAGCTTGG 47129 28 100.0 27 ............................ TTTGTAAAACAAGTTGACTGTTACTTC 47184 28 75.0 0 A..........A.C......T...TTC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.1 32 GTTCACTGCCGTATAGGTAGCTTAGAAA # Left flank : TCTGAATATTGACCAATGGTTGAAAAACCTGGTTGATGGGGATTATGTGCATATTACGTCGATTAAAAGCGTACCGGCAGAAATTAAGGGCTACGCTTGTTATGGTAGAAAGCAGACGTTTAACCAATCTTATATTGCACGTTTACAACGGCGAGCTAATGCAAGAAATAAAGGAGAATCTTCTTTAGCTTCGACGACATTAACTGACTTACCGTATGTTCAGCTCGAAAGTTACAGCACTCCGACTGAATTAGAGGGTCAGCGTCACGGATTCACGCTTCATATTGAAAAAAAACTGGTAGATAAAAATGAGAACTTCGTTTTTTCTACCTATGGTTTAAGTTCGGAATCAGCACTTCCAGAATTTTAACCATATAAAAATCCACTCTTTAAAAACTTAGTTAATACAACACCTTATAATAAGGGGTTAAAAATTGGGTAGTTTTGTTATCTGATTCTTAACCCTTTATTATTAATGGTGTTTTCGTTATATTTTCACA # Right flank : AATCATTTTTTCTACTGAAAAAAATCTTACGCTTACCTGGTTACAGGTATTAAAAAGGGTCCATAACGGCCCCAAGCTAGTTAAAATTCAATATCAGCATAAGTGTAATACGTGCCATCAGCTCTAAACTCGCACAGATTGTTCAGTACGAAGCTTCGGCGGTACTTAGGGCATTTCAGTTTACTACGATTGCTATGCAGCTCTCTGATGAAATGGCTGTTATTGATACACGCATGCAAGTCCTTCTTGATCGCTGCACGAGCATTGGCAATGTCTTGAATGAACCCTTTATGCTCCGCATCCATTACGTTCTGAATGGCTATTTGCTGAATGTCATCAGGCAACTGATCTAAGACAAACAAGCCGTGTGCAGTTAAAAAATCTTGGTGTTGTGCTTGAATATTCATTTTTATAAACCCTATCTCTAAGCCTTTAATCCGGTGACTTTCCGGTTGAGCAAGCTGCTCTTCATGCAATTAATTATCTCTTAAAACATGGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75157-73448 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXQ01000009.1 Acinetobacter sp. 10FS3-1 NODE_9_length_113039_cov_85.013063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 75156 28 100.0 32 ............................ AACTCAACAAGGATGGAAAGAAGTATTTGAAA 75096 28 100.0 32 ............................ TCAAACGTGGTGGCTTGGTGATCCTGATTCAT 75036 28 100.0 32 ............................ TTAAATCGGTTTTTAGCTCTTGGAGTTCAACA 74976 28 100.0 32 ............................ AATTGCATCAGAAATGAATTCAGTCGGAACAA 74916 28 100.0 32 ............................ TACAACGAGCTTCTAGAAATGCAAAGCTTATC 74856 28 100.0 32 ............................ GTGACATTTTAAGAGCCATTAAAAAGCTAGAT 74796 28 100.0 32 ............................ TAGAGATGGCTAAGCAAGGCATACCACTAAAA 74736 28 100.0 32 ............................ TTCATGCTGCATTAAAAAGGTAATTGCGTCAT 74676 28 100.0 32 ............................ TTATTGGTATCACGATCAATATGCTGTCCACA 74616 28 100.0 32 ............................ TAAAAGCATTTTTGCTTGCTTACGCACCGACT 74556 28 100.0 32 ............................ ACGTATGCAAGAATGTAGGACAGTTTGATGAT 74496 28 100.0 32 ............................ AGCCATTATCACCCCGCAATCGACTACCTAAG 74436 28 100.0 32 ............................ TTGCACACTGTAAAACAAATTAATTTTACCAA 74376 28 100.0 32 ............................ GCGTGCAGATTTACTTTGATCAATCCAACCGT 74316 28 100.0 32 ............................ ACAAGCAGAAAAGCAGGGCGTGGAAGAAAAAG 74256 28 100.0 32 ............................ GAAATGTCTAAGTATTCGCAAGGTACGGAAAG 74196 28 100.0 32 ............................ TTTGGGGTATGAATCGCCCATGTGTAGGCATG 74136 28 100.0 32 ............................ CATTAATAAGTGCAAGTGATTAGGCTGATTAA 74076 28 100.0 32 ............................ TCAAGTAGTTTTAAATAATCGTTTCTCATAAC 74016 28 100.0 32 ............................ GTTCACTGAAGTCATAATTCTGGTATTAAAAA 73956 28 100.0 32 ............................ ATAGCCCCACATAAGAAGCGCAGGACCCGCTT 73896 28 96.4 32 ................T........... ATAATCGCAGTACGAGTCTCGACTTTGGTAAT 73836 28 100.0 32 ............................ TAAATCAGATATCAGCCCGTTTAGCGATTTTT 73776 28 100.0 32 ............................ TGTCGTTATCAGAGTAGCCGTTCGGGTAGTCT 73716 28 100.0 34 ............................ TATACGCAATAGGTTTAGTTACAGAGCAGTATAA 73654 28 100.0 32 ............................ GATGGAAATGGAATATGTTGGCCATCATGTGC 73594 28 100.0 32 ............................ TTGTCCAGATCTGCTGGAATTAAAATCAGGCC 73534 28 100.0 32 ............................ ATGCACCAAAGGCAACTGCCAGTGCAAGTAAG 73474 26 92.9 0 ........--.................. | C [73451] ========== ====== ====== ====== ============================ ================================== ================== 29 28 99.6 32 GTGTACTGCCATATAGGCAGCTTAGAAA # Left flank : TGATCATTGGTGCCTTTGTGGAGGCTCGTTCTTGTGAGCGTTTCTATGCACTTGCACCTTTGGTCGATGAAGAGCTGGGCCGTTATTATCGTTATCTGCTGAAATCCGAATCTCGCCATTATGAGGATTATCTGGCACTGGCGATGGATGTGGCAAAAACCGCAAAATGGAAAAATCCAGAAGAGAATATCCAGAGCCGTATTGAGCATATCCGGGAAGTAGAAAAGAATCTGATTTTAAGTCCAGATGAGCTTTTTCGTTTTCATAGTGGTGTGCCCGTACAGGCAGCATAAGTTTGACATGATGCAAGCGGGACAAAGTTCCCGCTTTTTCTTTGGGCTGAAGTTGATTAAATAGAGGCTTTATTTAACCCAAAATATTTTAATTTTCTAATTAAATATAAAAATTAGAAACTTATAGATAGATAGGAATAAGAGGGCTATTGGGGTGTATTTTAGATAATACTATGTTTTTTATCTGGTTTTAGGTATTTTGGTTGT # Right flank : GCGAGTTGATGATTTTAAGGTCGCTAAAAGAAGGGAGGGCATAAAATAGAAAATAAAAAAGCCCGCTTTAATGCTGCGGGCTTTCTTGAATTTGGCTCTCCCACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATGGGAGAATCTGCATGCGATTATAGAGACATTTTGACAAGGGTCAAGCAAAAACTTTCATATTTATGACAAATCATATTTATCTGATTTTAATTTAAACAATTGCATAAAAATATTGAAAAATACTTGTCAGGAGAATATCCAGTTGCTAGATTGAATCCATAAAGTCGTTTGATCAAATGGTCAAACAGTGTGGATTTAAACCGACTTGCCAGCACAAAAATGGCTAAACTGGAGAAAGCGAATGAATACGCTCACAATCCCCCAAATTTTCGCGCAGTGGTCTTTCTATCAAGAGCATTATCTCGATATTATTCAAGATTCGAGCCAATATTTTACT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19133-11063 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXQ01000037.1 Acinetobacter sp. 10FS3-1 NODE_37_length_27874_cov_82.667460, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19132 28 100.0 32 ............................ GGTAACAGATTCATCCACCATATTTTCATAAC 19072 28 100.0 32 ............................ CTTTGGTGAACGGTTGAGAGAGTTTCGGCAAT 19012 28 100.0 32 ............................ TCCTAAACGACCTTTACTAATCTGACGCTCGA 18952 28 100.0 32 ............................ AAAAAGAAATGGCAGTAAAAAGAGAGGCATTG 18892 28 100.0 32 ............................ TCCCACTCCTGAACCTGAAAATACTCATCAAA 18832 28 100.0 32 ............................ AATCTAAAATCTTGCTCATAAATAGCACCTTT 18772 28 100.0 32 ............................ AGATTCAAAATCAGAAGCAAAAACTTATTGAG 18712 28 100.0 32 ............................ TTTTTGGTGTTTCTTTTGGGTAATGTACTTTC 18652 28 100.0 32 ............................ TTGCAAGGTAAGGGCGGAGTCGGAAAATCATT 18592 28 100.0 32 ............................ TGTTTCTTTTTGATTTTGGCTTGCAGCAGTCA 18532 28 100.0 32 ............................ AGCAGCAGCACAAATTTTGATTACTTTCAAAA 18472 28 100.0 32 ............................ ATGCTGAAAAGAATTGTCTTGTAGCTGGAAAT 18412 28 100.0 32 ............................ GTTCGAGGGGCAAAAATAATTTGACAAGCCAT 18352 28 100.0 32 ............................ TTGCGCGGTGTGCAACTAGAAGCCGCAAAAGA 18292 28 100.0 32 ............................ TCGAAGTTCAGCGACAATCTGCGCTGTCGTGT 18232 28 100.0 32 ............................ CACTGGAATGCGAACGGCTACAAACATTCCCT 18172 28 100.0 32 ............................ TTACCAATACCTCCACCAGATTGAATAGTCGC 18112 28 100.0 32 ............................ AAGCAAACAAGCTAAAAGGAAATGAAAATGAA 18052 28 100.0 32 ............................ TAGAGCATCAGAGATATGATCCAGTCCAGACT 17992 28 100.0 32 ............................ CGTGACACATCGGGAGCTTGTGACAATATGCC 17932 28 100.0 32 ............................ GCTCTTAATAATGGCCATAGTATGCAAGCACC 17872 28 100.0 32 ............................ TATACAATCGCAAGCACAGGCAAAAAATCATT 17812 28 100.0 32 ............................ AACAGAAGCAGCCACAAAGGGCATGAACAAGA 17752 28 100.0 33 ............................ CATACCAATCAGCAAATGTTCGCCGGATTGTAT 17691 28 100.0 32 ............................ TTGACGAATCACATAAACCGCTGCTGCCATTT 17631 28 100.0 32 ............................ TTATTGTGGTTTGCCCATACCATGGTAAATTC 17571 28 100.0 32 ............................ GATGGCGTAGTGACCGAGAAAAGCGTTAAAGC 17511 28 100.0 32 ............................ ATTAACGCAAATCCTGAGCGCTTAACACCGTT 17451 28 100.0 32 ............................ ATGTCGCCAAGCTTTGTCATGTCTTCATAGCG 17391 28 100.0 32 ............................ ATTTGTACCAATTGAGAACATGCCACGGGGGA 17331 28 100.0 31 ............................ TGATGCTGAGCCGATTAATAGGCAGTTGCAT 17272 28 100.0 32 ............................ TTTATGGACAATACCAGCGGGATCGTATTTGC 17212 28 100.0 32 ............................ TAGAAAGTATTCATGGAAAAAATAGCAACCAA 17152 28 100.0 32 ............................ GTCGTGGGCCATACCTGCAATGGTTTGACCGG 17092 28 100.0 32 ............................ TGATGCTGAGCCGATTAATAGGCAGTTGCATG 17032 28 100.0 32 ............................ TTCCGCTAAGGTTACGTTTATTAATTCAACAG 16972 28 100.0 32 ............................ ATAAGCTTTGCGTAATACTCCTGACAGTGCGG 16912 28 100.0 32 ............................ TCTCGACTCTCGGAGGCATATGCCAATCACTC 16852 28 100.0 32 ............................ ACAAAGCCCAGGCGGTGCCGGAAGGGTTTGTT 16792 28 100.0 32 ............................ TGAAAATGCACACCGATTTCGGATAGGTGTAA 16732 28 100.0 32 ............................ TATAGGATGCTTTATCTGTAATTAATTGTAAA 16672 28 100.0 32 ............................ TCTGAGGGTTTGAATACCAATGGTGACTACCC 16612 28 100.0 32 ............................ TGACAGAGATTGGGTAATCAGCTCAAGTTGTG 16552 28 100.0 32 ............................ TTTGTGAGTTCCAGTGGAGTAGGGAATAACCA 16492 28 100.0 33 ............................ AGTGCTTGCTGCATTGAGGCATGAGGTTGAATT 16431 28 100.0 32 ............................ TGACAGTGCGGAATCTTGTCTTTGATCTTCTG 16371 28 100.0 32 ............................ GTATTCAGAAGTGAAAGCGACTGCAAAATCAA 16311 28 100.0 32 ............................ TCAATCAGAAAATGCACACAGTGATATTTCTC 16251 28 100.0 32 ............................ GGGTAAACCGCGAACGCATTAAAGGCCGTGTT 16191 28 100.0 32 ............................ AAGACGGACGGCCTTGGCGGAGCTAACCGGAA 16131 28 100.0 32 ............................ GACTAGATCGCACCATGTTCAATGCCGTATTT 16071 28 100.0 32 ............................ TAAAGAAAAGTAGACGGAAAACAGACCTTACA 16011 28 100.0 32 ............................ AGAATACTTACGCTCAGTACGAACATCGGTTT 15951 28 100.0 32 ............................ AACCCAAATGCTATTACTGAAATGAAGGTGAC 15891 28 100.0 32 ............................ GTCTACAGCTTAGGACGCTTTGCATTCCCTAT 15831 28 100.0 32 ............................ TAATACCTAGACAAGCGCAATCATGCGAAAAA 15771 28 100.0 32 ............................ TTTGGAACGCATGGTCTAGCTTGGGTTCAACT 15711 28 100.0 32 ............................ TGTCCGTTTCTGTGTTTTTTTCAGGTGGCGTT 15651 28 100.0 32 ............................ GTATGCCACGATTTCAGGGCTAAATACATCAC 15591 28 100.0 32 ............................ GCAACGGCGCTGTATAAATCATCAAACGTGGA 15531 28 100.0 32 ............................ CAAACACCCAGGTCATCGAATGCCGATTTACG 15471 28 100.0 32 ............................ AAGAGAAATTACAAGCGCGTGAAGCTGAACTT 15411 28 100.0 32 ............................ CGAAGCCTTTACGGTGTCAGCCGTTGCGCTTG 15351 28 100.0 32 ............................ TATATCGAGCATACAGAGAGAAATAGACATGC 15291 28 100.0 32 ............................ GTTAGCAGACCATGCCATAGTAAACGAGCCTG 15231 28 100.0 32 ............................ TGCTAGCAAACTCCGCACACCCGTTACAATTG 15171 28 100.0 32 ............................ TCAGAGCCGAACTCGCCCAACACGACACATTA 15111 28 100.0 32 ............................ TGCAGTTTGAAGCCTTTCTTCGCTACTGTGAA 15051 28 100.0 32 ............................ GTTCAGAATGACACTGTTGATGCAATTTGTTG 14991 28 100.0 32 ............................ AGAGCGCAAGGGAATGGCGCGCTATATTTAGC 14931 28 100.0 32 ............................ ATGACGTTTTCCGTGATAATACAAAGCGCGAG 14871 28 100.0 32 ............................ CCTGCATTGATAATAAATTCAGTCATCTTTCT 14811 28 100.0 32 ............................ AGCCAATACATTGGTATTGTCAGACGCATCAT 14751 28 100.0 32 ............................ AGCTGGGGTCGCTTTCAATTGATGGGTGAAAA 14691 28 100.0 32 ............................ TTACTATCCGTACTATCAACGACTTTATTAGG 14631 28 100.0 32 ............................ AAACCAATCATGATACGGTCCAAAGCAATTGC 14571 28 100.0 32 ............................ GAAAGCCGAAGTATTTTAAACATGTACTGTTT 14511 28 100.0 32 ............................ AATGACGTTTGCTGTTTGTGCTGCTTCATCTT 14451 28 100.0 32 ............................ ACACCAGATGAGCGTCCATAGTTACGCCAACA 14391 28 100.0 32 ............................ ACGTATCGTGAAATGTGGTCGTCTGGTCAAAT 14331 28 100.0 32 ............................ TTTCTGTTCACGTAGGCGTTTACGTCTTGGGG 14271 28 100.0 32 ............................ AATCACTGCACCAAACAGTGCATCACCATTCA 14211 28 100.0 32 ............................ TCACCTTCCGTCAGCGTATTACAGACAGCTAT 14151 28 100.0 32 ............................ ATGAGATAGCCAAGGCGTGTCCATTCACGTTG 14091 28 100.0 32 ............................ TTGTTGTTTTGGGGGGGGCTTCAACAGACCCC 14031 28 100.0 32 ............................ ATTCATTTTTTTTGCTTATCGGGAGATAAAAT 13971 28 100.0 32 ............................ ATAATTTCGGGCTAGATGAAAAAAGAGTTTTA 13911 28 100.0 32 ............................ ATCTGGCGCGTTCTTGCGGATTTCTTCTAGGC 13851 28 100.0 32 ............................ AAAAACCTAATTCATTTGGTCGCCCAAGACGG 13791 28 100.0 32 ............................ GTCAATGTGTGGATATAGCAGGCTAGTGGCTA 13731 28 100.0 32 ............................ ACGAAGCGAATTGGAACCGCTACCAAGCATAT 13671 28 100.0 32 ............................ TCCAAAGGCGGTCTTTTAGCTTTGCAATGTGT 13611 28 100.0 32 ............................ ATGTTAGGGAAACGCTTGATACATTCATGCTT 13551 28 100.0 32 ............................ AATATAAAAAATCCAATACAGGGCTTAAAGCC 13491 28 100.0 32 ............................ ACTCAGCAAAAAGAAAGTGCTTTGCTTATGCC 13431 28 100.0 32 ............................ ATCGTCCTGAGAAGATATCACCAGCAAAGCCA 13371 28 100.0 32 ............................ GTCAGAGCGCCCGTACTATGACGAAACAGGCT 13311 28 100.0 32 ............................ CGCGATAATACCACCACCAACTTTATCAATTA 13251 28 100.0 32 ............................ GCTATGAATCCTGCCGAGCCACTAAGCAGCCG 13191 28 100.0 32 ............................ TGCACCGTTGCCAGTCAGTTCGGTCGCGCTAT 13131 28 100.0 32 ............................ CAACTATTGAGTTGTCTAAATCGATCTCATAA 13071 28 100.0 32 ............................ GAACGAAATGAGTTCGATTAATTGAACCACTT 13011 28 100.0 32 ............................ CAAGGCTGAACGAAAAAAAGCCAAGCTTAAAC 12951 28 100.0 32 ............................ TTTGGATTGGTGGCCGTAGGTTTTAATCATCT 12891 28 100.0 33 ............................ ATGTACGAAGCCCACCTTATGCGCAAAGTTGTT 12830 28 100.0 32 ............................ TGACGACATACGAGCGTTGTGCAGCTCGTCAT 12770 28 100.0 32 ............................ TTGAAAATCAAAAATAATCCAAGTAAATGCAA 12710 28 100.0 32 ............................ ACTCTGAAACGATACCGCAGCGATGCAGCTCA 12650 28 100.0 32 ............................ AGAATCGGTGATGATTGTTTTCTTAGCTCTTA 12590 28 100.0 32 ............................ AAGCCAAAGAAGTACTGCAAGTGATGGTTGAC 12530 28 100.0 32 ............................ TAACATCGATGCCACATTCATTGACCGGTACG 12470 28 100.0 33 ............................ ACCCGAAGGTGGTTTACTTAGGTGGCCCTGGAA 12409 28 100.0 32 ............................ ATATTGATACCGAGCGTCTTAGCGTTGTCGCT 12349 28 100.0 32 ............................ ACCTGAACTGATACTTGTATTCACAAGAACAT 12289 28 100.0 32 ............................ TTTTTCAAGGCTGCACAGCTCATTCAATCTCA 12229 28 100.0 32 ............................ TCCTGAATTGATGCAGTGTTTTGGCCTACGGT 12169 28 100.0 32 ............................ TCGCACCAGTGGCCAGTACGTTGCTTGGGCTT 12109 28 100.0 32 ............................ TTTACCCCATGTCGGCCAAGTTTTTAGGGATG 12049 28 100.0 32 ............................ GTTGGCAAATTTAAGCGTGAACTCGTGATAGA 11989 28 100.0 32 ............................ TGATAGATGCCTGCAATAGCTCGGAAGTTAAA 11929 28 100.0 32 ............................ TCTATTTTTAGATATAGATTGGCCTTTAACCG 11869 28 100.0 32 ............................ TGTAGTAAAAGACAACCGCTATGAGCATGCTG 11809 28 100.0 32 ............................ GAACGGGTCAGTTCGTTGATATATAACTTCGT 11749 28 100.0 32 ............................ AAAGCAAAGTAGAGGGGGTTTTATTTATGCTA 11689 28 100.0 32 ............................ ATCGTTCAGCCAGAATTAGCGGGTGAGCTGTC 11629 28 100.0 32 ............................ AACCACAACATCATTCCAATCACTGATACCTT 11569 28 100.0 32 ............................ TCAGCATCCACACGGATTTGCTTCATCTCATC 11509 28 100.0 32 ............................ GATAGATGAATCTATATTCGAACTGAGCTTGA 11449 28 100.0 32 ............................ TTGACGCTGATCCATTCCGGCACCGCCTGGGC 11389 28 100.0 32 ............................ TGCATGTGGCGCAACAATTCTTCAGCGCGTTC 11329 28 100.0 32 ............................ ATTGCGAATAATTCCGAAAAGTTGCGAATATG 11269 28 100.0 32 ............................ TGATTGTTGTGCTGTGCATCGTGATTGTCTGC 11209 28 100.0 32 ............................ AAACGTGGGTCAAAGTAGTTATTGCGAACAAT 11149 28 100.0 32 ............................ TAAAGCTACTCGAACAGAACAACCAGCTAATA 11089 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================= ================== 135 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GATATAAAGAAATGGCTAGACCGTTTAACTGATTATTTGCATATTACTTCGATTCGCGAAGTACCTGAAACTAAAGTGAGGGGCTATGCAATATATAGTCGTAAACAGGTTAAAACCAATGCTGAACGCTTGGCACGTCATGAGGCAAATAAGGGACGTTATAGTTATGAAAATGCTTTAGCACATTATCAAAAATTTATCACAACTACGGATTTACCTTATATTCAAATGCTCAGCCTAAGCACTTCTAATGAACAGGATAAGAAGCGTTTTAAATTATTTATTGAAAAGCGACCTGCTGAAAAATCTGAAACTCAGGTTTTTAGTACTTATGGTTTAAGTTCGGTGTCATCTGTACCCGAATTTTAACCCAATATTTTTTCACTCTTTAACAGTTTAATAAAATCAATAAGTTATAGCGGTAGGTTGAAACTTGGGTCTTTTGTGGATTTAAAGGGTTAACTTACTGTTATAACTTTATTTTTTGCTGTAAAATTACT # Right flank : CTTAATACCTACACCTGATTACCATTTTTAAAAATGGTGACTGATCACCTGAATCACTCACCATATGCTTTGAGCCGAGTAGGGGCTAGTTGTTGGCTTCTGGCAAATCAAACCAGATCACTTGAGCATCCTCCAGCGCCTTAATCTGACTTGCTTCAATGAAAGCAATTGCACCACCAGCCGCTACAGTATGTTCTGCAATCTGGACTGAACCGGAAATCACATGTACATAATTCACCTGCTGTGTTGCTTCAACCTCCAGACTTTGCCCTTTGTGAATCACTGCAGTTTTGACTTCAGTATTCTGGCGGATATGCATAGGCGCATTGTCATTTGGTCCACAAATCAAATGCCATTGGTTGGGCTGCTCGTGCGGATCACATCTAATTTGTTGATAGCTGGGTTCGGCATTCCGCTCATTAGGCACAATCCAGATCTGCAATAAATGCACCTGCTCATCACCCTGGTTCATCTCACTATGACGTACACCTGTGCCGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //