Array 1 613301-614518 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073275.1 Streptococcus equi subsp. zooepidemicus strain IN-6992 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 613301 26 100.0 40 .......................... TTCTCCATGCCGATAATTACCATCTAATCTAATCGTCTCG 613367 26 100.0 40 .......................... CCTTTAAGGTCAAGCTGAGGCTTCTCAGGTCTCTGTCTCG 613433 26 100.0 40 .......................... CATCAACTCGCCACGCTGTGGCAATTTCTACCTCGTCTCG 613499 26 100.0 40 .......................... ATAGGCTAAACTATCGAAATATTTACCTAGATTTGTCTCG 613565 26 100.0 40 .......................... TAAAATTACAAAAGTAGAATCTTTTACGATTTCGGTCTCG 613631 26 100.0 39 .......................... TGCTTGTTTTTCTGCTTCATTCTTTTGTGATTCGTCTCG 613696 26 100.0 42 .......................... TTCTACGAAGCTATCTAGCAACTGCTGGCCACCCTTGTCTCG 613764 26 100.0 40 .......................... TGCGATGCTAGGTTTTTTCTGCATAGTAACGTACGTCTCG 613830 26 100.0 40 .......................... ATCAATGAAAAGAAAGTAAATCCCAAAAAACACAGTCTCG 613896 26 100.0 40 .......................... ATCCCTAGCCCTAACCATAACCCCGTCACCTTCGGTCTCG 613962 26 100.0 40 .......................... CCATGGATGACCATGGCTACATCATGCCTGTGGTGTCTCG 614028 26 100.0 41 .......................... ATCAAGTCTAACCGAGCATCTGTCAAGCGAGCATCGTCTCG 614095 26 100.0 41 .......................... TCAATTAATTGTTGTAACTTTGACAATCTCTCATCGTCTCG 614162 26 100.0 40 .......................... TTTTTGAATGGTTGCTGAAACCTGTAAGAATACAGTCTCG 614228 26 96.2 40 ......G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 614294 26 88.5 39 ...TT.G................... AAATACTATCTGCAAAATGGTGGTCTGTCTTTAGTCTCG 614359 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 614426 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 614492 26 80.8 0 ..TTTC.T.................. | T [614516] ========== ====== ====== ====== ========================== ========================================== ================== 19 26 96.4 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //