Array 1 41-368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMBU010000099.1 Pasteurella multocida subsp. multocida strain PM1 NODE_99_length_561_cov_0.953917, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41 28 100.0 32 ............................ GTCTTGACCTCGACGACCTCGTAAGTAAAGGC 101 28 100.0 32 ............................ TGGAACCCGGAGAAGGACGGCAGCCCCACCGA 161 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 221 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 281 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 341 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTAAGAAATCGATCACAGCAAGCCCTACCTGACGGTCGATG # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16065-17653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMBU010000010.1 Pasteurella multocida subsp. multocida strain PM1 NODE_10_length_67735_cov_64.289034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16065 28 100.0 32 ............................ TCTAATAGGAAAATAAAAACATGAAACAACAA 16125 28 100.0 32 ............................ AATTAAACTATTGAAACTTTGAGTTTTCAAAT 16185 28 100.0 32 ............................ AATTCATTGAGGGGCATGGTAAACGTAAGAAA 16245 28 100.0 32 ............................ CTGGGGATTGACGATAGGTGAACGATGAGGGT 16305 28 100.0 32 ............................ TTTAATGTGGTCACTAAGTTATCAGAATGACC 16365 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 16425 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 16485 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 16545 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 16605 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 16665 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 16725 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 16785 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 16845 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 16905 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 16965 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 17025 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 17085 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 17145 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 17205 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 17265 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 17325 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 17385 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 17445 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 17506 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 17566 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 17626 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 97575-99881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMBU010000001.1 Pasteurella multocida subsp. multocida strain PM1 NODE_1_length_648142_cov_79.398074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97575 28 100.0 32 ............................ ACAACAACTAATATTTTAAATCTCATACAACA 97635 28 100.0 32 ............................ ATTTCGACGTCTTACCCCCCGTATATAGACAC 97695 28 100.0 32 ............................ TACAGGCAATCTGCATTTCATCGTGAACCCAT 97755 28 100.0 32 ............................ CAGATAACTTAAAGTGGTACGACCAGTCAACT 97815 28 100.0 32 ............................ TTAACTCTTTGATATCTTTATGTTTATCATCA 97875 28 100.0 32 ............................ AATGCCTGTCCGCTTGGGCGCAAGTATCAGCC 97935 28 100.0 32 ............................ ATATCACGCTGGGTCACCTACAGATGCCACCT 97995 28 100.0 32 ............................ CAGTTAGTTTGCTTAGGTTTGCTTAGAAGTGA 98055 28 100.0 32 ............................ AGCTATGGCGGACGGTAAGTTCACTTTCAGGT 98115 28 100.0 32 ............................ AGTCAACTTAGAGAGATAACTTAAAGAGGCCT 98175 28 100.0 32 ............................ TCGCTTTGTTTTATTTAATTTGCGACCTTTTA 98235 28 100.0 32 ............................ ATTTATATTTGTCTGCATTTCCTCGCTTTGTT 98295 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 98355 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 98415 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 98475 28 100.0 32 ............................ TTAGTTATACCTTTAGTTATACTCCTTTTCTT 98535 28 100.0 32 ............................ TCCAGATAACTTAATGGTCTAACTTTTAGTCA 98595 28 100.0 32 ............................ CCAGATAACTTAAAGAGGTCTAACTTTAGTCA 98655 28 100.0 32 ............................ TTATCCACAACTTCTTTAGCTACAAGCTTTGC 98715 28 100.0 32 ............................ ATTTCGAGCCAGTGCGTGCTTAGTATATAGTT 98775 28 100.0 32 ............................ AGACGGATTCCCTGTTTGGCAAGAATATTTTG 98835 28 100.0 32 ............................ TTTGTGAGAATCTATTAGAGAATGGGTCTGAG 98895 28 100.0 32 ............................ CAAATTGGGGCGCATACACAATTTCACAACAA 98955 28 100.0 32 ............................ TATACGGCAGTTAACGAAGGAAGGTAGGCACT 99015 28 100.0 32 ............................ AAACAGGGAATCCGTCTGGTGCGGTCCACGCT 99075 28 100.0 32 ............................ GACTACCTACTGTTCACCTACCGTTCACCTAA 99135 28 100.0 32 ............................ CTTCCAATTCTTAGCGTTCTGTTTTGAGTACA 99195 28 100.0 31 ............................ TGGATGCGCTCTCTAATTCCAAAGCGACTTG 99254 28 100.0 32 ............................ CAGATAACTTAAAGAGGTCTGACCAGTTAACA 99314 28 100.0 32 ............................ AAAGCTTGTCCGAGCTTTAAAGCAGACGTCTG 99374 28 100.0 32 ............................ TCACGGTGCTAATCACTAAGCCAATTTTAGCA 99434 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 99494 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99554 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 99614 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 99674 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 99734 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 99794 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [99802] 99855 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 273219-273848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMBU010000002.1 Pasteurella multocida subsp. multocida strain PM1 NODE_2_length_375098_cov_75.427028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273219 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273285 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273351 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273417 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273483 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 273549 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 273615 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 273681 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 273747 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 273813 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //