Array 1 915-467 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQY01000027.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_27.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 914 28 100.0 32 ............................ GCCATAAAGGATTAGGTAGCGCCCGACATGCC 854 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 794 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 734 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 674 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 614 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 554 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 494 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ATCGGACTCAGGCGGACTTGCGCCAGGCTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAGACGGCAGTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGGTGAAGCAACTGTGTCGCCGACACGGCTTCAGTGATGCCTCGTTCTACACCTGGCGGGCCAAGTTTGGCGGTATGACCGTGGCGGACGCCAAACGGTTGAAGGATCTTGAACTGGAAAACAGCCGATTGAAGAAGTTGCTCGCCGAGGCCCACCTCGACATCGAGTCGCTGAAAGTGGTCGCCCGGGGAAAAGGGTAAGCCCGACAGCACGGCGGGAGGCGGTGCAGGAGATGCAGGCGCGAACCGGCATCTCCGAGCGTCGTGCCTGTCAGTTGATCGGGCTGTCCCGCTCGGTGTTGCGCTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1469-2578 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQY01000032.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_32.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1469 28 100.0 32 ............................ AGCCCTTTCAGGATCAGCCAGCGTAGGACCTC 1529 28 100.0 32 ............................ TGTACAAAGGCGTTTACCGCAGAGTTGATTCC 1589 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 1649 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 1709 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 1769 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 1829 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 1889 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 1949 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 2010 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 2070 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 2130 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 2190 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 2250 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 2310 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 2370 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 2430 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 2491 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 2551 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGACCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 492863-494216 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSQY01000003.1 Pseudomonas aeruginosa strain DUN-013 IPC1018_3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 492863 28 100.0 32 ............................ AGTGAGAAGAGAACTGAAGGCATTCAGGCGAC 492923 28 100.0 33 ............................ TTCTGCGCCTTCTCGCCCTCGTCCTGGATTTCC 492984 28 100.0 32 ............................ AGATCAACTATCCGCGGGAGTTGGCATGACGT 493044 28 100.0 32 ............................ AACCCTCGATGACGCATATCGCGAGGCGCTGG 493104 28 100.0 33 ............................ AATGAGGTGCTGAGCCAGTCGTGCCCGCCCTTC 493165 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 493225 28 100.0 32 ............................ GCGCAGTTTCGGAGCACGAAGATCATGTAACG 493285 28 100.0 32 ............................ TTCCCTAGTCAGGTGCCGCGCTCCCGGCTCGT 493345 28 100.0 32 ............................ ACTCTTCGGGCGTATCGAACTCGACCCACTTC 493405 28 100.0 32 ............................ TACGACCAGGCGCAACGCAAAGCGCGCGTCGT 493465 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 493525 28 100.0 33 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 493586 28 100.0 33 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 493647 28 100.0 33 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCAGT 493708 28 100.0 32 ............................ TGGGCCGGCGCCTACGCGGCGCATCAGCCGGT 493768 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 493828 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 493889 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 493949 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 494009 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 494069 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 494129 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 494189 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCTGTGGGGAGGTTCTGGGTTTGGCATAGAGCCGAGGGCTGCCGGAAGAGAGTGGGCGACTCCGGAAGTTCCCGGATGGAAAGGGCTATAGAGAAGTCGAGGTCGGCCAGTTGTGCCAAATCAGTGCAAGACCGGAATCGACACCAGAAAGAAAAGAACCCGCGTTTTCGCGGGCTCTTTGGCATTACGTTTAATAGACCGAAACGTCAAAGGTAAGTCGCTTGCCTGTCCTATGCTCGTACCTCTCCACCGCCTTCCTATGGCTCTCAGAAGAGAAGCTGCCCTCGGCGAATTCGCATTCAACGCAAATGGTAGTAACGCGTCCATCCTTTCCTTCCGCGTTCACTTCAAAGCCCCAGTGAATGCGCCTGACGACAAAGTCCTCCATCCCCTTTTCACCATCACGAAGGATCGAAATGTAGTCACCCTTTTGCGGGAGTGCCTCCATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //