Array 1 15523-14895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNV01000021.1 Lacticaseibacillus rhamnosus K32 contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15522 34 94.4 30 --.................................. CCACGGGAATAATATCAATGCCTTGATGAA 15458 36 100.0 30 .................................... CACGAAGACTACACGCACGCTGATGACTCA 15392 36 100.0 30 .................................... GATGAAGAAGAACTGACAAAGATGATCAAG 15326 36 100.0 30 .................................... AAGCCGGTTAGAAGTGACATGCAAGAGCTG 15260 36 100.0 30 .................................... CATGKCGCAATCATTTGGGTGTCGTCATTG 15194 36 100.0 30 .................................... TWCCACGCCAGTGTCTGATGGTACTGTTGA 15128 36 100.0 30 .................................... TAGCTTGTTTGATAATGAATAGGATCGCGT 15062 36 100.0 30 .................................... AGCAAAATCAAAAAACAACTTGAACTTTTT 14996 36 100.0 30 .................................... GCCGTAACGGTCTGGTCAAATTCACTCACA 14930 36 91.7 0 ..........................A.....A.A. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : | # Right flank : CTTAACATTGCTAAACTATCCATTATTTGGGTCTCCTATAGTTGTGGAAGAGGAAAGGAAGTAATTGAAATAGAACGACAAAAATTATACAAGCGAGCAATGGACATGTTGTTAGATGGCTATGCTCCGTTAGACGCAGAGACATTAAGAGTTATGAAGGTACGCGAAGTTTATAGTCCTATTAATCGCGTAGACATGACAGCAGAGCAGTTAGGTGTTTGCTTTCCATTAAGACTAGTCAATAGAAAGCAATTGCGTGAGCTTAGAGAATTAATTCCACGTGACTTAACCCCGACAGAGATTTTTCTAAGAACAGCACGGTTGAAGGGTCAGGCAAAGCCATTGCACAACTATGCGCCTGATTCCGATGTCTGGCTTGATGGCATTATCGGTTCTTTATATTTTGGCGGTTCGGATGATGGGCATGATGATTTCTATTGACCAGACGCTGAAACTTGGTCTGGTAGTCCATCCTCTGAGATCGATATACGCCACAACTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 33536-34561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNV01000014.1 Lacticaseibacillus rhamnosus K32 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 33536 36 100.0 30 .................................... TCCAGGGCCCGCTCCTGTCCCGTCCCGGCC 33602 36 100.0 30 .................................... TGAGCGTGMTCATGAAGGCCGAGGCCGGCA 33668 36 100.0 30 .................................... TTCTTGTAAATCAGGGTAAACGTCAGAAAG 33734 36 100.0 30 .................................... YACGGCCACTTCATCGCGATCCACGTCATG 33800 36 100.0 30 .................................... TCTGCTTCAATCTCAACACGCGGTTGATCG 33866 36 100.0 30 .................................... YATACACCTTATTACCCTGTGCATTGTCGT 33932 36 100.0 30 .................................... TGTCATCTATTTTGAACGACAATGAAGATG 33998 36 100.0 30 .................................... TAAATTCTTCATATGTGACCATTTTTCCGT 34064 36 100.0 30 .................................... TCGTATACGCGTGAAATATTCGYAATTGAG 34130 36 100.0 30 .................................... TAAATCAGMGTKGGCAAGTTGTTTACACGG 34196 36 100.0 30 .................................... CMACGGGAATAATATCAATGCCTTGATGAA 34262 36 100.0 30 .................................... CACGAAGACTACAYGCAMGCKGATGACTCA 34328 36 100.0 30 .................................... GATGAAGAAGAACTGACAAAGATGATCAAG 34394 36 100.0 30 .................................... AAGCCGGTTAGAAGTGACATGCAAGAGCTG 34460 36 100.0 30 .................................... CATGCCGCAATCATTTGGGTGTCGTCATTG 34526 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAGAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGGTTGAGCTGGCACAGCAACTGGCAATGAGCTTATTAAAAGAGCCGTTGTTAAGCGAACTTCCAGTTACAGTCGAACCCGGTGGAAAACTTGAACAAATTATAAAATACTGTAATGTTCATTTTGATGAGGAAGTAGTCACGGAGCCCTCCTCAAGAATTGAAGCAGCAATTCAGACTTTGGTAAAACTTGAAGAGAAACGGCTTGTCATTTTTACCAACATCAGTCATTATTTAGATGTTGAGGGTATGAGCAGGTTGTTAGATCAGGTTAAGGATACATCGTTGGAATTGCTTCTCATTGAATTTTCAGATGTCGATCGTAGAAAGTTCTTTGAGAAATGCCAGTATATCTATATTGACAAAGATTTTATGGACAGTCGAGAACTGATTGATTAAGGGACCGTGTGAAAACACCG # Right flank : CTTCCACGCCAGTGTCTGATGGTACTGTTGAGTCTCAGGTAGATGYCAKCTAACAACATGTCCATTGCTCGCTTGTATAATTTTTGTCGTTCTATTTCAATTACTTCCTTTCCTCTTCCACAACTATAGGAGACCCAAATAATGGATAGTTTAGCAATGTTAAGGTTTTTGAATTGATTGATCTGACATCTACCTGAGACTGTGAGTGAATTTGACCAGACCGTTACGGCGCTCTTGAACTGATTGATCTGACATCTGCCTGAGACAAAAAGTTCAATTTGTTTTTTGATTTTGCTGCTCTTGAACTGATTGAACTGACATCTACCTGAGACACGCGATACTATTCATTATCAAACAAGCTAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTCAACAGTACCATCAGACACTGGCGTGGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCAATGACGACACCCAAATGATTGCGGCATGGCTCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 35355-34725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNV01000014.1 Lacticaseibacillus rhamnosus K32 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35354 36 100.0 30 .................................... TAACGGGAATAATATCAATGCCTTGATGAA 35288 36 100.0 30 .................................... CACCATGTCTGATAGCGAGTAGATGACTAA 35222 36 91.7 30 .....C..G......................G.... CATGATGTAAGAATGTAAAAGAAGTGCAAG 35156 36 97.2 30 .G.................................. AAGCCGGTTAGAAGTGACATGCAAGAGCTG 35090 36 100.0 30 .................................... CATGCCGCAATCATTTGGGTGTCGTCATTG 35024 36 100.0 30 .................................... TTCCACGCCAGTGTCTGATGGTACTGTTGA 34958 36 100.0 30 .................................... TAGCTTGTTTGATAATGAATAGTATCGCGT 34892 36 97.2 30 ..................T................. AGCAAAATCAAAAAACAAATTGAACTTTTT 34826 36 97.2 30 ........C........................... GCCGTAACGGTCTGGTCAAATTCACTCACA 34760 36 91.7 0 ..........................A.....A.A. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : TGACATCTACCTGAGACCATCTTCATTGTCGTTCAAAATAGATGACAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACACGACAATGCACAGGGTAATAAGGTGTATGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCGATCAACCGCGTGTTGAGATTGAAGCAGAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCATGACGTGGGCAAGTTGTTTACACG # Right flank : CTTAACATTGCTAAACTATCCATTATTTGGGTCTCCTATAGTTGTGGAAGAGGAAAGGAAGTAATTGAAATAGAACGACAAAAATTATACAAGCGAGCAATGGACATGTTGTTAGKTGYCATCTACCTGAGACTCAACAGTACCATCAGACACTGGCGTGGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCAATGACGACACCCAAATGATTGCGGCATGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCAGCTCTTGCATGTCACTTCTAACCGGCTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCTTGATCATCTTTGTCAGTTCTTCTTCATCGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTGAGTCATCKGCMTGCYTGTAGTCTTCGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTCATCAAGGCATTGATATTATTCCCGTMGGCTCTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 35382-35549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNNV01000014.1 Lacticaseibacillus rhamnosus K32 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35382 36 100.0 30 .................................... TCTGCTTCAATCTCAACACGCGGTTGATCG 35448 36 100.0 30 .................................... CATACACCTTATTACCCTGTGCATTGTCGT 35514 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Left flank : CTACCTGAGACACGCGATACTATTCATTATCAAACAAGCTAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTCAACAGTACCATCAGACACTGGCGTGGAAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCAATGACGACACCCAAATGATTGCGGCATGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCAGCTCTTGCATGTCACTTCTAACCGGCTTGCTCTTGAACTGATTGATCTGACATCTACCTGAGCCCTTGCACTTCTTTTACATTCTTACATCATGGCTCCTGAACTGATTGATCTGACATCTCCCGGAGACTTAGTCATCTACTCGCTATCAGACATGGTGGCTCTTGAACTGATTGATCTGACATCTACCTGAGACTTCATCAAGGCATTGATATTATTCCCGTTAGCTCTTGAACTGATTGATCTGACATCTACCTGAGACCCGTGTAAACAACTTGCCCACGTCATG # Right flank : TGTCATCTATTTTGAACGACAATGAAGATGGTCTCAGGTAGATGTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //