Array 1 5939-7180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEEM010000036.1 Klebsiella variicola strain 25602 40294-00036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5939 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6000 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6061 29 89.7 32 ............TG............T.. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6122 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [6176] 6176 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6237 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 6298 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 6359 29 89.7 32 .........T...T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 6420 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 6481 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 6541 29 93.1 32 ............TC............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6602 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6663 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6668] 6725 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6730] 6788 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 6849 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC 6910 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6971 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 7031 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 7092 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 7153 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 94.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGTGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTTACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16271-16059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEEEM010000006.1 Klebsiella variicola strain 25602 40294-00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16270 28 100.0 33 ............................ TAGCGGGCATCTGTAAGAACGGCTTTTCGCCAT 16209 28 100.0 33 ............................ TGTTAAGCATGGTTTTGTCAGAGTATATGGACT 16148 28 89.3 33 ...........G..T..........G.. TAAAAAAGAAAAACTCTCCGGTTCCCTGTTCGG 16087 28 85.7 0 ............C.T......C.....T | C [16063] ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCAGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGAGGCGGGCAGGCCAGTAGGGTATATCGGTCCTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGTTTGATAAGGAAATTAAAATGAAAAGAGCCGAATTAGACGTTGTGGTTTTAGGTGAGGATTTGCCGAATGAAGGGCTGGTAAAAGGAACGCTTGGTACGATTGTTATGGTTTTTAATGCGCCAACAACTGGCTATCTGGTCGAGTTTTGCGACGAGAAAGGAAAAACAATCGCAATGCCAGTTTTATTCCCCGCCCAGCTAAAGCGCTATTTCACGATTGGTAACCTGAAGTCGCTGATGGTGGAAGGTAATTATCCCGTAGCCGACCCTGTAGACCCAGATGTCATGGCAGATTTAATGCACAAAGTCGCGCCTGTTGAATGGGAGGACAAGAAAAGAAGGGTCTATGAGGATATTCAACGACTATTGATTAGTCGGCCGGACTACGCGGATATGTTCAATATTATGGATGGGGGTGAGTACAATGGCATGACATTGTACAGCCTGGTGCAGGCAGAGAACGGTGAACCTGCATGGTCGAATATCTTTGTTCGAAAC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.60,-11.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //