Array 1 350337-349822 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830898.1 Rothia sp. HMSC062F03 Scaffold244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 350336 28 100.0 33 ............................ CGATTTGGCGCAGGCTCATGCCATGGAGCGCGG 350275 28 92.9 33 ...C........T............... GACGGTGGCTGCTCACACGATTAATCGTGGTGG 350214 28 100.0 33 ............................ GAAATGGTCTGGTGCATCATCCCTACGTGGGTA 350153 28 92.9 33 ...C....A................... TCATGCCGGTCATGAGCCAGCCGATAACCCATG 350092 28 92.9 33 ...C....A................... TGCGCGAGCGGAGATCAGCAGGTTGTTCCAGAA 350031 27 85.7 33 ...C......T.........-....A.. GGGCGACGACTGGAGCGGTCGTGTCGGCTTGGT 349971 28 92.9 33 A...........T............... GAGCGGCCACCGTTCCGTAGCTGAGGCGTACCG 349910 28 89.3 33 A...........T.............T. TCAGAACTGCCACTGCATCGTGAGATTCAGTGC 349849 27 85.7 0 A.A.........T-.............. | A [349834] ========== ====== ====== ====== ============================ ================================= ================== 9 28 92.5 33 GTGTTCCCCGCGCGAGCGGGGATGAGCC # Left flank : TCAGTGTGTTCCCCGCGCGAGCGGGGATGAGCCGTACGGTTTCTACGTTGGGTCCTATGGCTCTACGTGCTCCCCGCGCGAGCGGGGATGAGCCGGGCGACGACTGGTTCGGCCGCGTCGGACTGGTATGTTCCCCGCAGTAGCTGGGATGAGCCGACCTTACCCCAGAAATCTGCAAGGGCAGTAGGATGTTCCCCGCGCGAGCGGGGATGAGCCCCACTTGGGAAAACGCGGGCCTGTACCCCTTCGGTGTTCCCCGTGCGAGCGGGGATGAGCCCGAGGACAATCACTGGGGGCGCGTGCTCGGCATGTGTTCCCCGCGCGAGCGGGGATGAGCCCGCTTCAGGGGTGGAATTTTGGAGAAGGTCGGTGTGTTCCCCGCGCGAGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTATATCAAGGGCAATATTGAAAGGCTCTCAACGTATTCCCCGCACTCACGGGGCACAGGTAAAGCCCCTCGATCCGCAGCAGTAAGCTGCAGGCCGAGGGGCCTCCTCATGCATTAGCGTTAGCTGGTAGAAAGGTCAGCGTCCGAAAACTAGGGAACCGCCCCCTACGCCACCACCGCCTCCTTGGCCGCGGTGCCGTTGCGGGTCCACAGCAGGAACGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACGTTCGCAAAGTTACCCTGAGTCAGCGCCTTCACGCACTGCACGGTGTTGTACAGAGCCCAGAACTGCCACTGCATCGTCAGCTTCAAGGCGTTCAGAATGTTGGCCGACAGGGACAGGCCAAACACCACGGTCGTGATCCAGAACAGGAACGAGGTCTTGCCGCCGTAGCCAATGTAGTTCGTGACCAGGGAGAACGCGAACGAGCCCGCCACAATACCGCCGATAATCAGCTGACCCT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCC # Alternate repeat : TCCCCGCGTGAGCGGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 350954-350437 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV830898.1 Rothia sp. HMSC062F03 Scaffold244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 350953 29 93.1 32 ...........A................T GACCCTCAGGCAGCTATCCGTGCGATGGGAGA 350892 29 93.1 32 ................T........T... GGGGTACCCTCCGCTATACCAGCGATGTCAGT 350831 29 96.6 32 ............................G TACGGTTTCTACGTTGGGTCCTATGGCTCTAC 350770 29 93.1 32 ...C........................G GGCGACGACTGGTTCGGCCGCGTCGGACTGGT 350709 29 79.3 32 A..........AGT...T..........G ACCTTACCCCAGAAATCTGCAAGGGCAGTAGG 350648 29 96.6 32 A............................ CACTTGGGAAAACGCGGGCCTGTACCCCTTCG 350587 29 96.6 32 ..........T.................. GAGGACAATCACTGGGGGCGCGTGCTCGGCAT 350526 29 100.0 32 ............................. GCTTCAGGGGTGGAATTTTGGAGAAGGTCGGT 350465 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 94.3 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : CAGACTCGCCCTGGTGAGAGCGTTCATTATGGTCGTTTGTTGGCGAAGCTGGAGAACGGTCAGGAGTGGGCTTTCCGTCTTGCCGCGAACCCGGTGAAGCGTCATACGAATCAGCAGACGGGTAAGCGTGAGGTGTTCCCGCACGTGACTGTTGCCCAGCAGCGGGCGTGGATTCGTGAGCGTGCTCCGCAGTGGGGATTTGAAGTAATTCCTACTGTTGAGGGTCAGGATATTGAGGAGTGCCCGATGGTTTCTTCTCGTCAGGACCTTGCGTTTGCCCGCCGTAATGCTGAGGGTAAGGTCGGTAAGGTGACTCACCGTAAGGCTCAGTTTGACGGCGTTCTTCGCATCACTGATGTTGAGCTGTTCCGTAAGTCTCTGCTTTCCGGTATGGGCAGGGGCAAGGCGTACGGTATGGGCCTTCTAACGTTGGTGCCTCTGTCCCGATGAGTGCTGTGGAGCAGAGGGGGAGCTAATCTGTGCGGGACAATGTTTTGCTT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCGAGCGGGGATGAGCCCGATTTGGCGCAGGCTCATGCCATGGAGCGCGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGACGGTGGCTGCTCACACGATTAATCGTGGTGGGTGTTCCCCGCGCGAGCGGGGATGAGCCGAAATGGTCTGGTGCATCATCCCTACGTGGGTAGTGCTCCCAGCGCGAGCGGGGATGAGCCTCATGCCGGTCATGAGCCAGCCGATAACCCATGGTGCTCCCAGCGCGAGCGGGGATGAGCCTGCGCGAGCGGAGATCAGCAGGTTGTTCCAGAAGTGCTCCCCGTGCGAGCGGGATGAACCGGGCGACGACTGGAGCGGTCGTGTCGGCTTGGTATGTTCCCCGCGTGAGCGGGGATGAGCCGAGCGGC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //