Array 1 36-4885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVTL01000081.1 Corynebacterium striatum strain 1329_CAUR 1035_47729_807831_879_,...,955+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 96.6 32 ............................T CGTCGGCGGTCCAAAGGACACGATGATATGGA 97 29 96.6 32 ............................T CACTGCCCGGCTCGTAAATATTCTTCGAGCTG 158 29 96.6 32 ............................G GGAACTCACCAAACTTTGGCAGCTGAATGGTC 219 29 100.0 32 ............................. CGCCCCCACAGTCAGACCCGAATCAGACTGCA 280 29 100.0 32 ............................. CGCCATCGCTACCGTCGCTACCGTCGATGGTC 341 29 100.0 32 ............................. GCCGTAGCAACCGACATTGCACGGCTTTGCGG 402 29 100.0 32 ............................. TTGGCTGGGTTTCTAGCTCGCTGCTATCGTCC 463 29 100.0 32 ............................. ATATCACGCACAGCATCATGTGAGCGCAGATT 524 29 100.0 32 ............................. CCCATATGACGAATACGGCCCCGAATGGCACG 585 29 100.0 33 ............................. TTTGGGCCGGTGTGGAGTACGAGCGCCGCGTCG 647 29 100.0 32 ............................. GCGTCCACAACGTGCTCGCTTGCTTGGATCAG 708 29 100.0 32 ............................. GCCGAGGAAGCCGAGAACGAGGAAGCAAAAAT 769 29 96.6 32 ............................A CTGGAGGATGTCAGGAAGGCGGTCACCTAGCG 830 29 100.0 32 ............................. CGCGGGACCCTGGACGTGCCGTCCGTACTGCA 891 29 96.6 32 ............................T CCGTGGTGGCGGCGTCCAGCAAAATCGCTGGA 952 29 100.0 32 ............................. ACCTGGGCAAGAACCATATGACAATGCCTAAC 1013 29 100.0 32 ............................. TTCGATTCCCGCCGAGGTTACGGCAATGCCGC 1074 29 100.0 32 ............................. TAAGTTTCAGACTGCGGCGCTGCAGGCTATCG 1135 29 96.6 32 ............................G GACCGCTTCGCAAAGAGACTGAAGCAAGACGG 1196 29 100.0 32 ............................. CAAGACCCGCGAAGGCTACACACGCCTCACCA 1257 29 100.0 32 ............................. ATGCACTACACCGGGGCAGAAGCCTGTGCCTT 1318 29 100.0 32 ............................. ATTTCGCCCCACACCGCACCCCTATTGGAATG 1379 29 96.6 32 ............................G TAAATGAGCAACGAACTCGCACCAAACACCAG 1440 29 100.0 32 ............................. GTCATCGCCGCCGACGCATGCCCCAGCTGACG 1501 29 100.0 32 ............................. AATGGTTCGCGGGCGCTGCCCCACTCGGTGTA 1562 29 96.6 32 ............................G AAGTGGACCGCTTCGCAAAGAGACTGAAGCAA 1623 29 100.0 32 ............................. CGGATCCGCGTCAACCCATCACATTTCGCCGA 1684 29 100.0 32 ............................. CAGAATCGGCTATCCATACTCGGCGTTGGCCC 1745 29 100.0 32 ............................. TAGCGCGGCAAAAAGATCTTCGCGCCATTCAA 1806 29 100.0 32 ............................. CAGCAGGGCGAGAATCGGTACAAGACGGAGTT 1867 29 100.0 32 ............................. GTGGGTGACCTCCGCGCGCTCTGTCGTGGACG 1928 29 96.6 32 ............................T CACTATTAATGGAAGTAACGCAAGTGAAGTAC 1989 29 96.6 32 ............................G CCCCGCGCTGCCCGTATCCGAGATCTTCTTCG 2050 29 100.0 32 ............................. AATGATTGATTACGAGTACCGCTCTGGGCATC 2111 29 96.6 32 ............................T TACTAGCGCGATAAACATTCCTTCGATGTATC 2172 29 100.0 32 ............................. TACACCGACTGGATGAAGCGCATGATTGCCTA 2233 29 100.0 32 ............................. CAACAAGGGCCGCACAGCCCTGATAGCGATGA 2294 29 100.0 32 ............................. TGTGACCGTGCCCTCGCGGTACTCGAAGCAGC 2355 29 100.0 32 ............................. CACCGCGATGATTAGTGCAAGTGCACTCATTC 2416 29 96.6 32 ............................T CACTATCGGAGATAGGACGTAGCGCGGGCGTA 2477 29 100.0 33 ............................. CGTATTGCGCGCGGGAGCATGGTCTCTCGACGC 2539 29 96.6 32 ............................G TCTCGCGCCTTCTCAAGGGACCTCTGAAGCGA 2600 29 100.0 32 ............................. TGTCTACCGACTAATCGACCGGACACAGTTCC 2661 29 100.0 32 ............................. TCACGCAGGACGATTTCGATTTCCTGCTGGGC 2722 29 100.0 32 ............................. ATATCACGCACAGCATCATGTGAGCGCAGATT 2783 29 96.6 32 ............................G AAGTCCCAGCTCACTACCGCATAGCAGATGCA 2844 29 100.0 32 ............................. TCGTGCCACTCTTCCTCATTTTCTGGTTTAAA 2905 29 96.6 32 ............................G TTGGCCCGCGTGGCGGCGTCACCCGTGTTACT 2966 29 100.0 32 ............................. ATATGTTCCAGCTTCGGACGTTACGGTGACAA 3027 29 100.0 32 ............................. GATAATGCGGCGTGCGCGGGCGAGGGAAGGCA 3088 29 100.0 32 ............................. TTATACCGGGGCCACATTGATGGCTATGAGCT 3149 29 100.0 32 ............................. CGCCATAAACCGCCCTATACCGCCTTATTGCA 3210 29 96.6 31 ............................T TCCATTCTGGCTAAATAAGTGGGGATACCCG 3270 29 100.0 32 ............................. GCATCATCTCCAGATCGACGCCGGGGAACCAC 3331 29 100.0 32 ............................. ACTTGGTGGCTCGCGTGTGGGCTTCAAGGCGT 3392 29 100.0 32 ............................. GGGACGCCCGCTACGCAGCCCAATTCCACGCA 3453 29 96.6 32 ............................T AGGAAGGCGCTCCAATCTGGACGGCTTGGCCT 3514 29 100.0 33 ............................. CCCCAACCACCACAGAAAGGAACACCCACAATG 3576 29 100.0 32 ............................. GGGCTGTTGAGCAGGGCGTTTAACTAGGTTCG 3637 29 100.0 32 ............................. CCAGACTGAACCGCCCCCACAGTCAGACCCGA 3698 29 100.0 32 ............................. CACGTTCACGTGGCATCACAGCAGCCATTGGG 3759 29 96.6 32 ............................G TTCAGTCCCATCCTCCTTGTAATAGGAAGGCG 3820 29 96.6 32 ............................T TCGACATCATCACCGACGATGAAGGCAGGGCC 3881 29 96.6 32 ............................G GGGAAAGCCCCTAAGAAAGGAAAAGAAAATGA 3942 29 96.6 32 ............................G TGTGTTGTCCGCCTGTTTGTATTGGCGGTGGC 4003 29 100.0 32 ............................. GCAAGGCCAGCGCACGGGAGCGCTTCGAGGAA 4064 29 100.0 32 ............................. ACAGACCACACCGACCCCGGCGCTGGTTTCCC 4125 29 100.0 32 ............................. CACCGCAGCGGAGACACTTTCCCCAAACAACC 4186 29 100.0 32 ............................. CGCCCCCACAGTCAGGCCCGAATCAGACTGCA 4247 29 100.0 32 ............................. GCCCAGCAGGTAAAAGACGCCCTCCAAGAACT 4308 29 100.0 32 ............................. TATCCCAACGATTCGTAGACGAGACAGACGCG 4369 29 100.0 32 ............................. GCGGCACCGACACCGCCCACGGCGGCACCCAA 4430 29 96.6 32 ............................T TTTGCTGCCATCAGCCACCGCCTTATCCACGT 4491 29 100.0 32 ............................. GCCATCAACCCATGCAGACCCCAGCACACGTG 4552 29 100.0 32 ............................. CCACCCTCAAATGTGGCAGTGGGTAGCAGGAG 4613 29 100.0 32 ............................. CCTTAAGGACTTCGAGAACGCGCCAGAGGGCA 4674 29 100.0 32 ............................. GCACAATGTCGCTCACCTCGCCTACCATGACG 4735 29 100.0 32 ............................. ATACACCGCCCTAGTGGACTTCCTCACCAATC 4796 29 100.0 32 ............................. CATAGCAGTCCCTCATTTCAATATCGGCCAGC 4857 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CCCGGTGACGAGTTCTACCGGGTCAAGAGTGAGGTG # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACATTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8683-9931 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVTL01000031.1 Corynebacterium striatum strain 1329_CAUR 984_9964_342025_215_,...,880_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8683 29 96.6 32 ............................G CCACCGCCTGCGCGTGGTCGAGCTGAACTTCA 8744 29 100.0 32 ............................. CGCCGACAGGGGCATTGAATCAGACGCGTCGG 8805 29 100.0 32 ............................. TCAATGCCCTCTTTGCCGTTAGTCTTAATTAA 8866 29 96.6 32 ............................G GAGGGCGATTGATAGATCCATTCGCGGGTCAG 8927 29 96.6 32 ............................G GCTTGGGTGCGTTGGTTGAGTTCTTCGCGGTT 8988 29 100.0 32 ............................. GGTGACGAGTTCTACCGGGTCAAGAGTGAGGT 9049 29 100.0 32 ............................. CAGTGCGCAAATATCTTGCGGTACTTCGACAA 9110 29 100.0 32 ............................. CATTCAAGGATCCGCCATTGCAGCAGAAGTTA 9171 29 100.0 32 ............................. TGGGTGTCGCGTGATGATGCCGAGGTTGAGCA 9232 29 100.0 32 ............................. TACGCCGGGACGAAACCCCTGACCAGGCATCC 9293 29 96.6 32 ............................T AAGCACCTCGCCCTTACCGTTCTGGCGCGGGA 9354 29 100.0 32 ............................. GGTGACGAGTTCTACCGGGTCAAGAGTGAGGT 9415 29 96.6 32 ............................G ACGACTACTGGGAATTACGGCGTGACATGCGT 9476 29 100.0 32 ............................. GGTATTGAGGTGAAGCTAGATAAGTTTGGTGA 9537 29 100.0 32 ............................. AAGGCGCCAAGGATCGACTACGCCACTGTCAA 9598 29 100.0 32 ............................. AGTGGGCCCTTACCTGATTCCGGGACGTAGTC 9659 29 100.0 32 ............................. GATGATCTTATGCACTGGTGGGAGGGTGAGCA 9720 29 96.6 32 ............................G GAGTCGTCTGTGGTGAATTTGGTGTAGGCGAG 9781 29 100.0 32 ............................. GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACT 9842 29 100.0 32 ............................. GAACGAGCGGAACATGTCGCAGGCGGAAGCGG 9903 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : GTGTGCGCAGCGTGAAGGTGTCGCCGCTGACTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //