Array 1 33960-31410 **** Predicted by CRISPRDetect 2.4 *** >NZ_VANH01000022.1 Photobacterium damselae subsp. damselae strain 89dp-OG16 NODE_21_length_89746_cov_91.4735_ID_12561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33959 28 100.0 32 ............................ TCTATGGATAAGTACCCAATTGCCTGCGGTGT 33899 28 100.0 32 ............................ TCATGCTGAAATTTAGCACTATTGGATAAAAT 33839 28 100.0 32 ............................ AAAAGGTCCCACGCTTCGTTTCGTGCTTTTGT 33779 28 100.0 32 ............................ AAACCGATCACGGACGCGGCCAACACTTCGAT 33719 28 100.0 32 ............................ TTTTTTGTGTTGGCCATCTTAGAAACAAAACG 33659 28 100.0 32 ............................ TGAGAACGAAACATAACAACCGTGATTTTTAG 33599 28 100.0 32 ............................ AATGCGACCGCCCGTCGTCTTTATCCTAATAA 33539 28 100.0 32 ............................ CTCTAGCTCCAGTGTTCGGCCCACTCCCAGTC 33479 28 100.0 33 ............................ CATGGGGGTTCCTTTTATCAACGATACGGGGCA 33418 28 100.0 32 ............................ TTAAGCCAAGGAACATCTTCTAACTTAATAAA 33358 28 100.0 32 ............................ TACATCAGGCGGCGGAACGCATCAGTCATTAC 33298 28 100.0 32 ............................ TTGGCAATTAGTTGCGCTCCCTATCCTTTTAA 33238 28 100.0 32 ............................ ATTTGAGATCATAAAATCAAAAGTAGTTAAAG 33178 28 100.0 32 ............................ AGCAGCGCATTCACATATTCGCTTTTCTTACC 33118 28 100.0 32 ............................ AAACTATTATTAGAAATATCACCTAAACTAGA 33058 28 100.0 32 ............................ TTTTTGCCGGGCTTGATTTGCACCGCCTCCAG 32998 28 100.0 32 ............................ TATACGACGCCATCCAAGCAGAGCTCGAGAGC 32938 28 100.0 32 ............................ GAAAAACCAGATGTCTGGGACGAACTGGGCGA 32878 28 100.0 32 ............................ TTGATCACCTTACGGCCTGAGCCTAGTTCCCG 32818 28 100.0 32 ............................ TACAAACACTTCATCATCTTGAGTTTTTCTGC 32758 28 100.0 32 ............................ GATTGTTTTACCTAGAACAGAATCTTGAAATT 32698 28 100.0 32 ............................ AAGACGGCTCAACTTTTACTGGTTCTAACGAG 32638 28 100.0 32 ............................ AAACATCATCAGATACACCAAGCACGCGAGCA 32578 28 100.0 32 ............................ AAGCGGCGATCTAATGCTGATTATATCTGAAT 32518 28 100.0 32 ............................ AGAATGCGGTGAAATGAACGCAATAACAGCGC 32458 28 100.0 32 ............................ AGATTGGAAACAGATTCCTAGTGAAATAAAAG 32398 28 100.0 32 ............................ TGCAAAATAGGTATTCCCATATGACTTTTGGA 32338 28 100.0 32 ............................ TGTATATCACCCGACTGCGAAGGCCCTGACCA 32278 28 100.0 32 ............................ AGAAAATGAATATGTAATCATTACCGAAAAAA 32218 28 100.0 32 ............................ GTAACATAATGGCGGATAATGCGAATTAACTG 32158 28 100.0 32 ............................ GTGATTATTGCGAGATGTACACCGCAGCGCAG 32098 28 100.0 32 ............................ AAGTGAATAAAACAGGCACACAGAGAATAATG 32038 28 100.0 32 ............................ GCTAGATCATAACATGCTTGCTGAAAACAGTA 31978 28 100.0 32 ............................ TTCACCAGAAACAGCAGGAAACGCACCTGTAA 31918 28 100.0 32 ............................ CGGCGTTCCGTTATCGGCGCGGCGGGCGGTTT 31858 28 100.0 32 ............................ GTGAGCTTATGGGATTAATCGCCAATGAAACA 31798 28 100.0 32 ............................ AAGCATTTGACGAACTAACGATTTATAATCAA 31738 28 100.0 32 ............................ CCTGCAATCACGTCATCAACGTAGGTCTTGGT 31678 28 100.0 32 ............................ ACATTGGCTGTCACTTTTGCAGTGAGAAGATA 31618 28 100.0 32 ............................ TACAACAATGCAGCGGGCGCGATTGCAAAATT 31558 28 100.0 32 ............................ GTGCGGTTTTTGCTTTGCGCTTGAGACAGGGC 31498 28 100.0 32 ............................ GTTGTCAATACGACATTTGAAACTAGAGAGAG 31438 28 85.7 0 ............A........C..CT.. | A [31416] ========== ====== ====== ====== ============================ ================================= ================== 43 28 99.7 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GATGAACTAATGGCTTTACCTTGGTTGAAAGGTTTGCGTGATTACACCAACGTTAGTGCAATCTTACCAATACCTCATGATATTGCAGGGTATCGCACTGTGCATCGCGTGCAAAAAAAGAGTCCTCATAATTTGCGTAAGCGTGCGGTAGCAAAAGGCCGAATGACTGAACAAGAGGCTCTGACGAAAATCCCTGATGCGTTACAAGAACGATTAGCTTTACCTTTTATTCAGATGCAGAGTTTGTCGAATAAGCAGGTGATGCGTGTTTATGTTGATCTAGGAGAGATTCAATCAGAACCTGTTTGTGGCGAGTTTTCTAGCTATGGTATGAGCCGCACGTCGACCATTCCTTGGTTTTAATCTGTAGACCCTTTTTTCAAGCTTATACTTAACTTATTGATTTATAAATAAGGTTGTAATAGGTGAGAAAAAAGGGTTTTTTATTGGAAAATGACTTAAGCTCTTTAAAAATAAACCGAAATCGAATAAAGTCTTCA # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATTATTAGCAAAAGCATAAATATAGGTACTACATGCTCATAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCTGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAGAAAGCCCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCTAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTTCTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45687-42417 **** Predicted by CRISPRDetect 2.4 *** >NZ_VANH01000022.1 Photobacterium damselae subsp. damselae strain 89dp-OG16 NODE_21_length_89746_cov_91.4735_ID_12561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45686 28 100.0 32 ............................ AGCAACAGAACATAAGACCGCAACAATCAAAG 45626 28 100.0 32 ............................ TGCATAAAAGGCATATCACTAGAAGCACCAGT 45566 28 100.0 32 ............................ TTTTCCCCCTAGACCTAACCTAAAGGATTGAA 45506 28 100.0 32 ............................ ATACCATCACGAAGAAAACATAAACGCTTAGA 45446 28 100.0 32 ............................ ATATAACGTTGAGATGGCATAAAGGAACTGGC 45386 28 100.0 32 ............................ TTGAAACCCAACCGCTAAGGCCTGTCTTATAC 45326 28 100.0 32 ............................ AAGAAAACGATCTACTTCGACCTGGACAACAA 45266 28 100.0 32 ............................ GTGACCCGTTCTTCTTCTGGGTCACACATGGC 45206 28 100.0 32 ............................ TAATGGCGACCAGGTAAAGACACTTTTAATGA 45146 28 100.0 32 ............................ TGATGGGGGTAAGCCTGATTACGGTTCTATCA 45086 28 100.0 32 ............................ AAATGCAAAAATTACACGTGTCGATATTGCCC 45026 28 100.0 32 ............................ ATTAGAGCATCAGGCATTAGGTGCTATTCGCT 44966 28 100.0 32 ............................ TTGTGATTAAAGCCAAACGCTCAAAATGATGA 44906 28 100.0 32 ............................ AGATAATGTAATTACAATTGTTAAAGATGATC 44846 28 100.0 32 ............................ GACAGCTGGAGCATGTGAACAATTACAAATGA 44786 28 100.0 32 ............................ ATGAGCAACATCAGACTGACCGTCATATAATC 44726 28 100.0 32 ............................ TGTTGCATCTTGTCAAACGCTAGATGATTATT 44666 28 100.0 32 ............................ AAATGCAACTCGACTATCAGCGTCTAAAATAA 44606 28 100.0 32 ............................ TTGCGGATAAAGAAGATCTCTCAAATAAAATC 44546 28 100.0 32 ............................ TGGTTAGCACTGAAATACTAGAAGGGTGGTTA 44486 28 100.0 32 ............................ AATCTCCTACTCCAAGCATTCTGATAAAAATG 44426 28 100.0 32 ............................ AAAGCGAACCACTCGCCTGTTGTGTCTTCGAT 44366 28 100.0 32 ............................ AGTTTTTGAGTAGTAAAATCTAACTCAATTTG 44306 28 100.0 32 ............................ AGAAGATTGGGGATATGCTGTAGTTGCTCATT 44246 28 100.0 32 ............................ ATATCCAGTTGGTAAATATAAATTGGATTTGC 44186 28 100.0 33 ............................ CCCATGGGATGGGGCCCCCTTTTCCCCATTCAA 44125 28 100.0 32 ............................ TTTGCACGAAGTGTTTACTAAGTTGTGCGAGG 44065 28 100.0 32 ............................ ATAAAAAACATAATTGTAATCAATATAAATAT 44005 28 100.0 33 ............................ TTCGGAATCTGCGCAAGTTAAAAAGTAATTAAT 43944 28 100.0 32 ............................ GATGAAGCACTACAAGACATGATCCACAAAAA 43884 28 100.0 32 ............................ CGCAAATTTACGACCTAGAGAAATAAAACCAA 43824 28 100.0 32 ............................ CATTTCTGGGTGGTATTTGTATACCATGACGG 43764 28 100.0 32 ............................ AGCAATGCCGTAATGGTTTCGATGTTGTAGAT 43704 28 100.0 32 ............................ ATGACGGGAAATAACTCGGAGTTGTCATAGCA 43644 28 100.0 32 ............................ AGCATGTCACATTGTTATTGTGCCGTGTTTGC 43584 28 100.0 32 ............................ AATTGGTGACAATCGCTTCTATTTGGCTAGTG 43524 28 100.0 32 ............................ TCGGTGATGTAAACGTCACTCCAGTCCTTGCC 43464 28 100.0 32 ............................ TTCGGTTTGTGGAAGTGTCCAGAAACCACCAG 43404 28 100.0 32 ............................ GAGTTCTTGCCAACATTGCGTATGTTGGTTGA 43344 28 100.0 32 ............................ TGGTTCGGGATCAATCAGTGTTGGATCAACAA 43284 28 100.0 32 ............................ TGTCTGCTTCTGACATGGCCAATGCGATTGTG 43224 28 100.0 32 ............................ TATGGTCCTCGCGGTCAGCAACAGTTAACCGG 43164 28 100.0 32 ............................ TGCCGAACGCGCAAATGCCGCCATTGCCCTGT 43104 28 100.0 32 ............................ GAAAGCTTTCCGAGTATTTTGCCGCCCAGAGT 43044 28 100.0 32 ............................ GTTAAATAACCAACAATAAAAAATACAGCTAA 42984 28 100.0 32 ............................ AACTGCTTCAAGAAAAGCACCCTGATGTAGAG 42924 28 100.0 32 ............................ AGTCTGCGAATTCGTTTGCTAGTTGCTTTAGT 42864 28 100.0 32 ............................ GTTATAGCGCAGCTCTTTTGGCGCGAATGATT 42804 28 100.0 32 ............................ AAGTACACAGCGTCGGATCTTTCCATGATGTC 42744 28 100.0 32 ............................ TCAAATCCTCGCACGCTGTGATGGTTTTTCAA 42684 28 100.0 32 ............................ GATCTCTCTGATAGCAAGCGTATTAGGGCTAG 42624 28 100.0 32 ............................ AGCACTACGACACCCAAGCGAAGAAGCGTATT 42564 28 100.0 32 ............................ TCGATGAAGCCGATACCCTCTTTGAATCATTA 42504 28 100.0 32 ............................ TTGAGTATCTTTGTTGAAGTGAAATCGCTTTT 42444 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.9 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTATTTTAAGCTGGATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATAGAATAAAGTCTTCA # Right flank : AATCCACTGCAGATCGGGGCGTTACTCCCTTTCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCTAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCACCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCCATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //