Array 1 30713-33162 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSQ010000034.1 Phocaeicola dorei strain 1001099B_141217_G4 NODE_34_length_64207_cov_24.9697, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 30713 47 95.8 29 ...A............................-............... GATTTAAAACCTTAACACCACCAATCATA 30789 47 97.9 30 ................................-............... TATGAACCCGATCTGGGGGATTCTTGGGTA 30866 47 97.9 29 ................................-............... CGCTTCATTGTGGGGAGTTTACTTTAATA 30942 47 97.9 30 ................................-............... TCTTCTCATATTCTATACCTTTCTTAATGA 31019 47 97.9 29 ................................-............... TACGAGTACCAATAATATTACCAACACCT 31095 47 97.9 30 ................................-............... CCATAGATGCAAGAGAACGACCAATGTCAG 31172 47 97.9 29 ................................-............... TCCCCATTTCCAGTGGGGCGAATGTCTTG 31248 48 100.0 29 ................................................ CTTCTGATTGGTTTACTCGTACTGTTCCG 31325 48 100.0 30 ................................................ CTTCTAATGCAGGTAAGGCTGCCATTACTA 31403 48 100.0 30 ................................................ TGTGAAGGGTACATACCGCTTTCGAAAAGA 31481 48 100.0 30 ................................................ GCTGAGGACGAACTTTGAATGTACGATACG 31559 48 100.0 30 ................................................ AATGGTTTTATGCACATTTCCTTTGGTTCT 31637 48 100.0 30 ................................................ TAAAAGGAGACAAATTATCACCGATGAGAG 31715 48 100.0 30 ................................................ CTATCCAAGGCTAAGCATAAAACTACTAAA 31793 48 100.0 30 ................................................ CTTATGCGTATAATGTAGATTATTGGGATG 31871 48 100.0 30 ................................................ AAAAAGCCAAGAGAAGCCCTGGATCTCGGT 31949 48 100.0 29 ................................................ TGTTTATATCGCTAACGGGTATGCTGATG 32026 48 100.0 30 ................................................ TGTTCAATCAAAATGCCGTGGATAATTACG 32104 48 100.0 29 ................................................ TGCCTTACATATATTATTTTGCAAAGAAA 32181 48 100.0 30 ................................................ TACAATGTTCTTGTGTTAGATATTTCCGCT 32259 48 100.0 29 ................................................ TAATTAATTAATTTAAATTAGACCATACG 32336 48 100.0 30 ................................................ TGTGTTTCTTGGGCAGCAGTAAGACGACCA 32414 48 100.0 30 ................................................ TGAATTTGCCGAGAAACAACGTCAGGATCA 32492 48 100.0 29 ................................................ GTTTGAGAAAGATTATCCTGATTTGTATA 32569 48 100.0 30 ................................................ TGTCCGGCGATGCTGAGATAGACAACAATA 32647 48 100.0 30 ................................................ TTACCATTTTCAACATACATACGAACTTTA 32725 48 100.0 30 ................................................ TTTAAATGAAAGCATTATGAAAGCATTATA 32803 48 100.0 30 ................................................ TGGATTTTTTGAGAAAGGCGAGGTTTTTGA 32881 48 100.0 30 ................................................ CATTACCAATAGCACTAAACAAACCACCAA 32959 48 100.0 30 ................................................ CTAGGAGAGAGCATGCTCTCTCCAACTTCT 33037 48 100.0 30 ................................................ CCAATCGGAAGAAATACGATACTTGTTCCC 33115 48 100.0 0 ................................................ | ========== ====== ====== ====== ================================================ ============================== ================== 32 48 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGATACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 4342-4838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSQ010000059.1 Phocaeicola dorei strain 1001099B_141217_G4 NODE_59_length_17863_cov_24.3895, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 4342 33 97.0 33 ................................T TGTAAGTTGCTTGATATGCTTGGCTATGGTTCT 4408 33 97.0 33 ................................G AACATTGTTGGTTTGTTACGCTAACCTATGATA 4474 33 97.0 31 ................................C TCTATTATCATTTTTTTTAAGGTTAGGAAAA 4538 33 97.0 34 ................................G CCATGATATTTACTATATTTGTTTCTTCCTGGCA 4605 33 100.0 33 ................................. CCCACATGTGATTGTTTTCAAAACCATAGTCAA 4671 33 97.0 34 ................................C TCCAGTACCATGTTATGTACCTAAGGTATAGGAT 4738 33 100.0 33 ................................. TCAATGGCCCAGTATTCGGCAATATCGAAGATG 4804 33 84.8 0 ..........G.......A.A.......G.G.. | AA [4821] ========== ====== ====== ====== ================================= ================================== ================== 8 33 96.2 33 GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCATGTTTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTTTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTAGAAGTAATAGGTGTTGAAACGGCTTATAAAGTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAACTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : ATTGTTCACTCGTCGGTCAAGTTTATGGAAGAACTGTAAGCATTCGGCCTCTTATGTATTTCTCTCCAGGCTTTTGATTTTGTTATGACTGGAAAAAACACGTACAAGCCCGAATGCTTATCTTTTGTCTGTTTTTTTTTGTTGTTTCACCTAGGTGACAATACATTGGCACCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGATTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTGCACGATAAGGCCTTGTAAATGAAGTAAATGGATGAACCATCATGTAGGACACATCAAGAAGGAAAATCTATGAGTCTTCAGAAACAATGGTAAAAATCCACATACATACCAGTTAAGGGGAATTACGGATCCTTTTACACCACAAACCGTTGAAAATAAATGGTTTGTGGTGATAGAAACAAAAAAAGAACAGATGTCTTTTTAATACGCTATCTTATCCAATATCCCGTTCAAGTGTGCAATAGCCACTC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTACGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //