Array 1 133537-134725 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QEEP01000005.1 Vibrio cholerae strain BD04 BD4_S4_L001_R1_001contig_5_consensus, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
    133537	    28	 100.0	    33	............................	TGCGACTGGCTACCTGCGCTGCTCACCAAGCAC 	
    133598	    28	 100.0	    33	............................	CTTGTACCACTTGGCTTCAACGACTTCGGGTAA 	
    133659	    28	 100.0	    33	............................	CATGAAGGGCTATGAAGGGATTGACGATTTAGT 	
    133720	    28	 100.0	    33	............................	TCCCCAAAGACTGGATCTGACCTTGCGCCGTAG 	
    133781	    28	 100.0	    33	............................	TGACTTTGGCGAAGTTTTGCAGTGGGTTTTTGA 	
    133842	    28	 100.0	    33	............................	TCCAGCGCAGCATTGGTGAGCATCGAATCTTTG 	
    133903	    28	 100.0	    33	............................	TTTGGTTGTTGATGATGTCTGATGCCATCGCAT 	
    133964	    28	 100.0	    33	............................	TAAAAAATAACTCTTAAATACGTTTGGTGCGCG 	
    134025	    28	 100.0	    33	............................	CAGTCTTATTCATGTTTGTTACGATGATGTTTT 	
    134086	    28	 100.0	    33	............................	TGTTCTCGCCATTCAGTCCTGCTGATTTAGCGA 	
    134147	    28	 100.0	    33	............................	TGATTTATGACAGCTCGCAAAGAGAGTGGGTTT 	
    134208	    28	 100.0	    33	............................	CGACAACGAATGTTGATGCGGTCGTCAAAGATG 	
    134269	    28	 100.0	    33	............................	TCAAAAACCTGAGTTTGCAGAAGTTCTTGGGGC 	
    134330	    28	 100.0	    33	............................	TCAGGATATGCAGATCGGCTCGGATGAATGGCA 	
    134391	    28	 100.0	    34	............................	CGCAAACGAATCGTTGACCTCAATTCAGGCCGTG	
    134453	    28	 100.0	    33	............................	CGCAACCATTGCAGATGGCGCGTCACCTCCCAA 	
    134514	    28	 100.0	    33	............................	CATGAAGTAGATGATTCGATTGCAGTTGATAAC 	
    134575	    28	 100.0	    34	............................	CATGACTGATGCCATTAGTAAGCCTCCGGTAAGT	
    134637	    28	 100.0	    33	............................	CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 	
    134698	    28	  71.4	     0	.................T..AT.ACAGA	|                                 	
==========	======	======	======	============================	==================================	==================
        20	    28	  98.6	    33	GTCTTCCCCACGCAGGTGGGGGTGTTTC	                                  	       

# Left flank :   CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCTGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT
# Right flank :  AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACGCAGGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.40,-10.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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