Array 1 65310-63646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAZ01000027.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N23600 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65309 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65248 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65187 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65126 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65059 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 64998 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 64937 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 64876 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 64815 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64754 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64693 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64632 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64571 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64510 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64449 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64388 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64327 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64266 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64205 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64102 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64041 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63980 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63919 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63858 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63797 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63736 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63675 29 96.6 0 A............................ | A [63648] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82694-81568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHAZ01000027.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N23600 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82693 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82632 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82571 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82510 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82449 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82388 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82327 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82266 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82205 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82144 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82083 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82022 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81961 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81900 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81839 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81778 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81717 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81656 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81595 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //