Array 1 48563-47405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQVZ010000009.1 Staphylococcus haemolyticus strain GDY8P33P 33P_FDSW202594537-1r_1.clean_(paired)_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 48562 36 100.0 30 .................................... AATTCAATCGTTTATACACAAAAAGTGACC 48496 36 100.0 30 .................................... ATTGCCGGCTCTAAGTAGCCACGTTCTGCA 48430 36 100.0 30 .................................... AGCGAATGCTAAAAGCATAACTACTTCAAA 48364 36 100.0 30 .................................... TGAAACGTAAGCATAAATTATTTAGAAAAG 48298 36 100.0 31 .................................... ATTTGGTCAAAGTCTGTAAAATCACCCGCTT 48231 36 100.0 30 .................................... GTTTACTTAAACAAAGACAACAAGCTATCG 48165 36 100.0 30 .................................... ATGAGGTTGAAGGATATTACAAAGAATTAG 48099 36 100.0 29 .................................... CGTTAGTTGCAGGTATCATCTACCTGTGG 48034 36 100.0 30 .................................... GGTTATCCCATTCAATTACTGCGATTGGTC 47968 36 100.0 30 .................................... AGAAACAGAATGGTTACCAGTACTAGACTT 47902 36 100.0 30 .................................... ATTGAAGGTGGAGAAGCTGGAACATACCTC 47836 36 100.0 30 .................................... GTGCAAACTCATTTTTTTTGATATCACTTT 47770 36 100.0 30 .................................... TTCTTCTCCAGCTTTGATTTGTCTTACCAT 47704 36 100.0 30 .................................... TTGAACTGCATAAACGCTACCAACGTTTTT 47638 36 94.4 30 ...............G..................G. ATGTGATTTACCACTAGAGCCACCTCCATA 47572 36 100.0 30 .................................... ATAAAGGTAAAGTAACAGCTGGTGCGTTTG 47506 36 100.0 30 .................................... AAATCGACAATGTAAGCTATGACGATATAC 47440 36 86.1 0 ........G......G......A...........CG | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.9 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GATGCAAACATAATTGTATTAACAGGATCATTACATTTTCTATCCGAAGAGTGGAAATACAATAACTATATAAGAGATGGTGAGCAAAAAAACACATCTGAATTTCTGGAAGAATTAGAGTGGAATGCGCCACTTAATTTTGATAAGAGGGAACTAGAAGAAAGTTTGAATCGATTCATTTTAACTTATCAAGATAAATTAGAATTAAATCCTATAATATCTAATTATCAAATAGCACAAATTATGTTATTTAGTGCTATTGACATATATGTTGGCGTTTCATATATGCAACATTGTAATCATAAATTTGAATTGAAAATTAAAAATGAATTACTGCCTAAAAGCATCAATAAATATTTAAACCAACAATCGTTGAATTAATTACTTTGCTATAATTAACATAATAATCTATTATTATCTTAGTGAATGAGTTTAGCTAACTTGTTCACTGAGATACCTTTTTATAAACTAATTCTTTTAGCGATTTTATATTGCTAGAG # Right flank : TTACATTGATGCTACACCGCAAGATTGAAGTTTTAATACGCTAGTACTTCAGTCACAACTATTTTAAATAGCGATTATTAAGTGCTATTCCTTTCAAATGATTTGATTAAAGTGATTATCTCTATAATTACGCCGATCCATTATTCTTTTCAAATAATCCATAATATTGAGATCAATTATTTGGGGAAGAATGTAGAAATATTTAATATTAATTAAAATAGTAGTTGACTAACATGCTAAGGTGGAAATATAATAAATGTAAGGAACAAGTTTAGCTAACTTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGACTTTATGTCGTGTTTATCCCATTAATTTATTAATGGGATTTTTTCTTTATAATTAGACAAATCGCCAACGATGATGACTATCGTTGGCGATTATTTTTTCATACTATTGATTACACATTCTCATCTGTAATTTGGCCGAGCCAATAACTGCCGGCAAAACCGACGATTAATGTGATGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //