Array 1 271111-270843 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEK01000001.1 Salinivibrio kushneri strain AL184 contig-100_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 271110 28 100.0 32 ............................ TGACTTGTTCGCTGCTCAGTCGGTGCTCAATG 271050 28 96.4 32 .............C.............. AACCAAGTCAGCAATCGACCGAGCAGTTAAAG 270990 28 96.4 32 .............C.............. ACAGTGAGAGATTCGCAGGGGCGCGGCATCAA 270930 28 100.0 32 ............................ GTTTGGCGTTTGTGCCGGCTCTGGTGTGCGGT 270870 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAAACTGGACGATCTGTTACCCCGACCGTATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGGTGGTCTGATATTAGTTTGAGCCACTTCGAATGTTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATCAAACCGCATCTGTTGGATACGATCAACTTGGCGAGAGATATCTGGCCAAATCAACTTGTGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTAATCATTGGAAAGCCCTGCACAAGGACTTCACCATCGATTCGTAACCCAACGGAGAACTAAGCCGGCATCTTCTTACCCTTATTTTTTAGCTATTCAAAAATAAGCAATAAATACAGAGCGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : AAGCTTTGCAGGTGTTCCGCTGCTTTGAGCTTTCCTCCTTACCTCTATTTCTCTTACTGTTGATGCCTGTCTGGGTTTTTCATAGAAATGACTAATTTGAAATACCTCTAGGTGATTAAGCTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCAAGAATCTATTCTACGATAAGAAGATAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACGATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATGAATCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTAGGAAGAACGTATGTGGTGACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 274523-274076 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEK01000001.1 Salinivibrio kushneri strain AL184 contig-100_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 274522 28 100.0 33 ............................ TTGACCTCGGCGTCGCTGTCTACCGTGACATAG 274461 28 100.0 30 ............................ CATGTCTGTGGGTAAACTGTGTTTCAGTGT 274403 28 100.0 32 ............................ TCGATTTGCTGGTAGGTGGGGCCTGTTACTAG 274343 28 100.0 32 ............................ ACACAGGTAATCATGGGCGTCCTGGGTTGTGG 274283 28 100.0 32 ............................ ATACCGGACGGGCCAGGCCGTAAACCGTGCCC 274223 28 100.0 32 ............................ GTTCGTGCCATTTTTTCGCGCCCGAAGCGGTG 274163 28 100.0 32 ............................ GTCGTACGTTTTCATAAACCACGGATCGACAA 274103 28 82.1 0 A....................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAGTACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATCCTGTTACCCTTGTTTTTGGGATATTTAAAAATAAACAATAAATACAGATAGTTACGGAAAGCCATTTTTAGCAAGGGTAAAAGATGATATCTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTAATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCCTCAATGTCGGATGGCGCAGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTATGAAGAGAACGAGATCTCGTTGGGTTACGTGTTCATTTACCGTCGCTAGAGTCGATTCGGCGGTGCACCAATGATTTTTAAATCCGCTTTTCTACGCTTTTTCATCGTCGCGTAGAAATTCTCGTGCGAGCTAATATTAAGCAGGTAGAGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //