Array 1 43172-41209 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQZ01000039.1 Bifidobacterium longum subsp. longum strain MCC10048 contig0039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 43171 36 100.0 28 .................................... GGATGTCAATCAGGAACTTGTCCGTGGT 43107 36 100.0 28 .................................... CCTGACCGTCATTGGTAATGGTGGTATC 43043 36 100.0 28 .................................... ACACGTGGCGTTGGAATAATCCGTTAAG 42979 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 42915 36 100.0 28 .................................... GCCTCATGATGAAGAGTCGCAAATCATC 42851 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 42786 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 42722 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 42658 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 42594 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 42530 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 42466 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 42402 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 42338 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 42274 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 42210 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 42145 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 42081 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 42017 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 41952 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 41888 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 41824 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 41759 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 41694 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 41629 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 41565 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 41500 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 41436 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 41372 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 41308 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 41244 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 31 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGTAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCGGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 11022-10586 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHQZ01000044.1 Bifidobacterium longum subsp. longum strain MCC10048 contig0044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================================================== ================== 11021 25 77.8 72 GA....-..-...........G..C.. AGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACGGTCCGA 10924 27 59.3 33 GC.ACG..C.....C...G.A..C.C. ACGGCGGTCATCACGATCGCCACGGTCATCGCG 10864 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [10858] 10780 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 10720 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [10673] 10672 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 10615 27 81.5 0 ......A.......C....C.....CG | CC,G [10590,10595] ========== ====== ====== ====== =========================== ======================================================================== ================== 7 27 85.2 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGGA # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:-0.92, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //