Array 1 1491419-1492056 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1491419 36 100.0 31 .................................... AAAAAAAAGATGGACTATTTCCCTCGCAAGA 1491486 36 100.0 30 .................................... TCAGAGTTTACACCCTTAAGTCAAGTAAGT 1491552 36 100.0 31 .................................... TATCCGAAGAGGAGATAAAAAGGGAGAATTA 1491619 36 100.0 31 .................................... AATCCCTACCCAGAGCTGGTTGTGGTAGACC 1491686 36 100.0 31 .................................... AAAACTTATTTCCCCTACAAGGGGGAAAAAT 1491753 36 100.0 31 .................................... AGTAATAACAGACGAGGAAGAAGAAAAGATC 1491820 36 100.0 32 .................................... CTCTCTTTCCCTCGCTGGGGGTCTCTATAAAA 1491888 36 100.0 31 .................................... AGAAGAAGCATTAGATAGATATCCAATAAAA 1491955 36 100.0 30 .................................... GAAGTGGTGATGGAATGGCGGGCTTACATT 1492021 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 10 36 100.0 31 GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Left flank : TCTTAACTGAGGGGCTGATATGAATAAAACATCAAAATTTTTGCCTGTTTCCTCGTCCTTCAGATAATCGATGAATCCCTCTTTCCATTTCAATACATCATCTTCACTGGAAAGAAAAAACAATATATCGAGCAATATTTTTTCCTGATTCTTGAGCCTGAAGGTATGTCCCCTGTTTTTTATATGAAATATTACAGGCTGATTGTGGTTTACAGACAGGCTTGTGCCTTTCACAATCGCCTCAAATACAGAAACAGGATGTGCTATCGCTGATTTTATAAGTCGAATGTTAATAAGTTCTGTCTGAAGACGATACCACGATAAATTATTCAAAAAATCGGTAACCATTGAAATTATCCCCGCACTCTCCTGAAAAGCCCTGTGCTTAAATTATATATCATCTAAATTGAGCGATTCTAAAATCCTGAGATATACAACCACTCAATTTAGGTAAGAGATATTCAACCTCTGCTTATCTTCAGCCTTAAGTCTTGTATTCT # Right flank : CCCTACCCTTTGTAACTTTTTGTTTTCAAAGAACTTTTTTGCCCCTTTTTGCAAACCTCCCCTCCTCCGGGAAGTTTTTAACAATTTATTAACAGGGGTCTGCATCCTTCATAATTTAAAAACATTTTCAAAATGTTTCCCTAATTTTATACCACAAATACATAACCATCATCAATATCGTCTGTATCTTTTACACCTATTATGTTACTTTTATAGGAATATTCAAGCCGGTATATTTTTATAAATCCTGTCTGTATATTAAGGGCATTAAGTTTCTTAATTAGTTCATCCCTATTCTTTCTGTCCAGTCTGCATTCAAAGACACTCTTTTGGATTCTGAAACCAAATCCTTTAAGCACCTTGTCAACCCTTGCCCTTTCAAGGTCATCAGTTATGTCATACACAACTGCGTAATCTGAAAATCTGGTCTTTTTCATAGTATTCAAAACAGGCTCTGGTCAAATATAACCACATCCCCTGTAACAGGTTTCTTTTACAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 1492940-1493923 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1492940 36 100.0 31 .................................... AAACAGAAGACGGCGAAGAACTTGTGAGATT 1493007 36 100.0 32 .................................... TATGGGACAGAAGTATATTGTTGTAACTAAAA 1493075 36 100.0 31 .................................... TTAGCCAATCTCCCCTCTGTCATCAAGAAAG 1493142 36 100.0 32 .................................... AAAAGGAGGTTAAAATGAAAGAAATCATTATA 1493210 36 100.0 35 .................................... ACTTATTTCTCTCGTTCAGGCAGAAAAGGCATCAA 1493281 36 100.0 34 .................................... TGTAGGGATAGAGTTTTTCCTATCCATTATTACT 1493351 36 100.0 30 .................................... TTTATATGGCGAGACAGCGAAACTAAATCT 1493417 36 100.0 32 .................................... AGTTCACCCCAACGGGAAATTGTTAAGACAGT 1493485 36 100.0 31 .................................... AATTCTTAGAGGATGTAAGTCCTCTGCCTTA 1493552 36 100.0 31 .................................... ATATAACGAATGGATAGCAAATCAGGCAAAA 1493619 36 100.0 32 .................................... TCTCACTTAATTATAGAGAGGGGATAGTCTTT 1493687 36 100.0 32 .................................... TAACAGCAATCTGTGCGGATAGGAGGTAAATT 1493755 36 100.0 28 .................................... TCTGGGAAATATTCGAGGGGGGGTATTT 1493819 36 100.0 33 .................................... AAAAATAGGAAACGAAATAGTGGCGGAAGTAGA 1493888 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 15 36 100.0 32 GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Left flank : TCATCAGTTATGTCATACACAACTGCGTAATCTGAAAATCTGGTCTTTTTCATAGTATTCAAAACAGGCTCTGGTCAAATATAACCACATCCCCTGTAACAGGTTTCTTTTACAATATTATATTTGAATTAAGTCTTTTCAAAATATCCATATCCTACTGCTGTCTTTGCAGCGATGCCGTGTTCAGTCAATGCCTTTTTAAGCCATGATATTGCAATTTCATGTAGATTTTTCTCTGCAGTCAAGCCCTCACATTCAGAAATTAGCCTGCTTGAACCATTTTTTAAGATTTCATTTGCCTGCTTGAGTTTTTTCATCCCTACAGTAAATTCAAATTTAGTATCTTTGCCTACTGTTAGAAATGGGATTGGGTTGGGATTTAAATAATCCGCTGGTGGAACAGGCTTATTGCTTTTTTCTTTGCCTTGATAATAATCCCCATAGTGCGGATTCATTACATCAACCTCAAGTTGCGGGTACAAAGTAGAGAAAAGTATTTT # Right flank : CCCTACCCTTTGTAACTTTTTGTTTTCAAAGAACTTTTTTGCCCCTTTTTGCAAACCTCCCCTCCTCCGGGAAGTTTTTAACAATTTATTAACAGGGGTCTGCATCCTTCATAATTTAAAAACATTTTCAAAATGTTTCCTTAATTTTATACCACAAATACATAACCATCATCAATATCGTCTGTATCTTTTACACCTATTATGTTACTTTTATAGGAATATTCAAGCCTGTATATTTTTATAAATCCTGTCTGTATATTAAGGGCATTAAGTTTCTTAATTAGTTCATCCCTATTCTTTCTGTCCAGTCTGCATTCAAAGACACTCTTTTGGATTCTGAAACCAAATCCTTTAAGCACCTTGTCAACCCTTGCCCTTTCAAGGTCATCAGTTATGTCATACACAACTGCGTAATCTGAAAATCTGGTCTTTTTCATAGTATTCAAAACAGGCTCTGGTCAAATATAACCACATCCACTGTAACAGGTTTCTTTTACAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 1494807-1497074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1494807 36 100.0 33 .................................... ATAGCCTCAAAGCAGAGGGCTGGAACTCTATAT 1494876 36 100.0 31 .................................... AAAAAGCGATTAATCCGCCTCGCAGAAAAGG 1494943 36 100.0 32 .................................... GGACATGGTGCGAACAGATGAGCTTGTGGAGA 1495011 36 100.0 33 .................................... AAAAATAGGGTTGCAGAAATGGGAAGTAAAATT 1495080 36 100.0 29 .................................... TTTTGGGTGGGGTATGTCTGTCTTATACA 1495145 36 100.0 30 .................................... TTTATATGGCGAGACAGCGAAACTAAATCT 1495211 36 100.0 30 .................................... ATTAACCACAAGAAGTTATCGAGATTTAGA 1495277 36 100.0 33 .................................... ATAGCCTCAAAGCAGAGGGCTGGAACTCTATAT 1495346 36 100.0 35 .................................... CCAACCAGAGGAGACACCTCGCGGCGAGAAGAAAT 1495417 36 100.0 31 .................................... GCATTGTTATGTGTATTGGAGGTGCAAGTCT 1495484 36 100.0 30 .................................... GATCAGGGTTTGAGAATACTTGTAGGGTAG 1495550 36 100.0 35 .................................... TAAATGCCAACACAGCATACCATAAGAGAAGTTTT 1495621 36 100.0 30 .................................... ATAAAAACATTCGAATGGTGTGATATGAAA 1495687 36 100.0 30 .................................... CATTGTGGTGCAGTTACAAAAACCTGTACC 1495753 36 100.0 35 .................................... GGTAAAGAGACCATATTCCAAGAGGCATCAAAAGG 1495824 36 100.0 30 .................................... CTTCATTGTCCCTGTGACTCCGCCTTCAAG 1495890 36 100.0 32 .................................... ATGGAGAGGAACACCACGAATACCTTGTCATA 1495958 36 100.0 31 .................................... ATTCACAGCTTCAATCAGCCCTTGCAGAAGC 1496025 36 100.0 33 .................................... TCGGTGGAACTATCCACCGCAGGATCATTATGG 1496094 36 100.0 31 .................................... AAAAAGAAGGTTTTAGCAATGGCCTCTATAA 1496161 36 100.0 31 .................................... AAGGCAGTATACGGAGAGGTGGCAAAATTAG 1496228 36 100.0 30 .................................... TAAAACCATCTACGGAGAGGTAGCAAAATT 1496294 36 100.0 32 .................................... CAAAGAAGGAGGTGATAGTAATTGAGTGAATG 1496362 36 100.0 33 .................................... ATAGGGCAGTATTTGCTTGACAAATCTGCATTT 1496431 36 100.0 30 .................................... AAAAATAAAAATAAAAGCCCTCTGAGTATT 1496497 36 100.0 30 .................................... ATTTCGGCACAGGGGGTTTGGGTCTCTAGA 1496563 36 100.0 31 .................................... AATATTGGCGAGGATTGCTCTCATGGGACTA 1496630 36 100.0 32 .................................... AAAAGTCTAAGGAGGTATCGCATGGTTAAACT 1496698 36 100.0 32 .................................... CCAGCTCGGCCTGCGTGTCGTCATGTCGAAGA 1496766 36 100.0 33 .................................... AATAAGCAGGGATGCCGTCTATATGCCCTTAAA 1496835 36 100.0 31 .................................... GCAGACGCGGAGGAAGTTATATGAGTTAAAA 1496902 36 100.0 33 .................................... AGAATATGGAAAAGAAGGAATATGGTTGGAACA 1496971 36 100.0 32 .................................... TTAAAAGCCTGCCAATGATGGTAGAAACTACA 1497039 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 34 36 100.0 32 GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Left flank : TCATCAGTTATGTCATACACAACTGCGTAATCTGAAAATCTGGTCTTTTTCATAGTATTCAAAACAGGCTCTGGTCAAATATAACCACATCCACTGTAACAGGTTTCTTTTACAATATCATATTTGAATTAAGTCTTTTCAAAATATCCATATCCTACTGCTGTCTTTGCACCGATGCCGTGTTGAGTCAATGCCTTTTTAAGCCATGATATTGCAATTTCATGTAGCTTTTTCTCTACAGTCAAGCCCTCACATTCAGAAATTAGCCTGCTTGAGCCATTTTTTAAGATTTCCCTTGCCTGCTTGAGTTTTTTCATCCCTACAGTAAATTCAAATTTAGTATCTTTGCCTACTGTTAGAAATGGGATTGGGTTGGGATTTAAATAATCCGCTGGTGGAACAGGCTTATTGCTTTTTTCTTTGCCTTGATAATAATCCCCATAGTGCGGATTCATTACATCAACCTCAAGTTGCGGGTACAAAGTAGAGAAAAGTATTAA # Right flank : CCCTACCCTTTGTAACTTTTTGTTTTCAAAGAACTTTTTTGCCCCTTTTTGCAAACCTCCCCTCCTCCGGGAAGTTTTTAACAATTTATTAACAGGGGTCTGCATCCTTCATAATTTAAAAACATTTTCAAAATGTTTCCCTAATTTTATACCACAAATACATAACCATCATCAATATCGTCTGTATCTTTTACATCTATTATGTTACTTTTATAGGAATATTCAAGCCGGTATATTTTTATAAATCCTGTCTGTATATTAAGGGCATTAAGTTTCTTAATTAGTTCATCCCTATTCTTTCTGTCCAGTCTGCATTCAAAGACACTCTTTTGGATTCTGAAACCAAATCCTTTAAGCACCTTGTCAACCCTTGCCCTTTCAAGGTCATCAGTTATGTCATACACAACTGCGTAATCTGAAAATCTGGTCTTTTTCATAGTATTCAAAACAGGCTCTGGTCAAATATAACCACATCCACTGTAACAGGTTTCTTTTACAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCTGACGTCAGGGATGTCCGCTGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 1507082-1506377 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 1507081 36 100.0 29 .................................... ACTCTTCCACCTACTTCAAATACTTCTGT 1507016 36 100.0 32 .................................... TTTCGTTATTATCTCCACAAGCTCATCTGTTT 1506948 36 100.0 29 .................................... ACTCTTCCACCTACTTCAAATACTTCTGT 1506883 36 100.0 31 .................................... ATTATTTGTGTTGACGATTCTCCAAAGTATT 1506816 36 100.0 33 .................................... AGTCAACAGAGGTGCTGGTAACCTCCTGAAAAA 1506747 36 100.0 35 .................................... TGTGTCTGGACCGCCGAAGTAGAAGACCTTATAAA 1506676 36 100.0 30 .................................... ACTTTGGATGTGTCTCCTCACAACAACTAT 1506610 36 100.0 32 .................................... AATATACGGGGCGATTTCAATGAAAAAATTCA 1506542 36 100.0 31 .................................... CATTTTATAGAGTGCTTAGGAAATTTCATCT 1506475 36 100.0 28 .................................... TTTGATATTTATTTTCATATTTCCTCCT 1506411 35 94.4 0 ..............................-....G | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 99.5 31 GTCCCAGCGGACATCCCTGACGTCAGGGACTGAAAC # Left flank : ATTGTAAAAGAAACCTGTTACAGGGGATGTGGTTATATTTGACCAGAGCCTGTTTTGAATACTATGAAAAAGACCTGATTTTCAGATTACGCAGTTGTGTATGACATAACTGATGACCTTGAAAGGGCAAGGGTTGACAAGGTGCTTAAAGGATTTGGTTTCAGAATCCAAAAGAGTGTCTTTGAATGCAGACTGGACAGAAAGAATAGGGATGAACTAATTAAAGAAACTTAATGCCCTTAATATACAGACAGGATTTATAAAAATATACCGGCTTGAATATTCCTATAAAAGTAACATAATAGGTGTAAAAGATACAGACGATATTGATGATGGTTATGTATTTGTGGTATAAAATTAAGGAAACATTTTGAAAATGTTTTTAAATTATGAAGGATGCAGACCCCTGTTAATAAATTGTTAAAAACTTCCCGGAGGAGGGGAGGTTTGCAAAAAGGGGCAAAAAAGTTCTTTGAAAACAAAAAGTTACAAAGGGTAGG # Right flank : AGCAAGAAAGAGTTTATTCATTTTATAGACATAGCCCTTGGTTCAATAGCAGAAGTGTAATATCTTTTAGAATTCTCGGTTGATTTAGGCTATATAGATGAGGCAACCATAAAGGAATTAATGGCGATAATAGAAGAAGTGGGTAAGTTATTATGGAGCCTTCAAAAATCAAAACTTCAGCCTTAAGCCTTCAGCCTGATCTTCAACCTTAAGCCTATTTCCCCTCTCCCAAAATGGAGAGGGTTTTTTTTAATTTTGTGAAACCCTACTATATTTTTATCCAAAAGGCTATTATTTTTTGTTTAGATTTTTTAATTGAGGCAATGATTCAATTTCATTTAGATTTTTGGTGAGGTAATTCGGCTATAAAAAATACGGCAGCAGTAGATATGGCGTGAGGGTAGATAAAGATTGAATGAAGATTTTTGTTGAAATTGAGAAAAGTTTTTGCGATAATTTATCTACATTTTCAATAAAAGGATAAATGATAGACAATAGTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAGCGGACATCCCTGACGTCAGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 1700304-1700009 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1700303 29 100.0 37 ............................. CTTCTTTTTTCTTGAGTTCTTCAAGTCTTTGGGCATA 1700237 29 100.0 38 ............................. CTTCATGAAGTGATCAATAAAATTACTATTCATTATGA 1700170 29 100.0 40 ............................. TTCGATCGTGATATTATCGCAACAGTCAGGGGCAAATATC 1700101 29 100.0 35 ............................. TAAGGTTGCCAAAGCCAGCTGGGACAAGATGTGGG 1700037 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 5 29 100.0 38 ATTTCATCTGAACCATGTGGGATATAAAG # Left flank : GGTTTGAAAACCTATTCATCATCATCACATTCATAATCATCACATTCGTCATCATAACCTGCTGGGCATTCTATGACATCAGAACATCTAATAAACCCAGAATCAAAGTATAGGCAATACAATTCCCCATTTATCCACTCGCCTTCTGTGCAAACATCTCTCATATTTACATCCTTCCCCTGCCTTTTGAATTTTCTATCATCAACCTCTATCTTTATCATACCTTGCCTCTTGTATGAAATCATATATGCACTTTTCGCTGACCCCTAACTTAACCGCAAGTTCTTTGTGATTAGTGCCGTCAAAGTTCCTGATCGCATACACCTTCATCGCTTCTCTTAGTGATTTGGTGCTAATATATAGATTTAACCCCATTAAATTTTCGCATATTGCCTGTAATACTTCCAGTCCGCATAGCGAGTATATTAGCAATAGATCCCCTCGTAACATGCTGGACAGTTCCTCTTCTGAGAAGTCTCTGAGCCAATCCATATTATTAT # Right flank : GTGTCTTGAAGTGTTTTCCCTCCCTGCTTCATTGCCCGCTTTGAGGGCTTCCACTTTGGCCGTCCTTCCTGCGCAAAATTTTCCTCAACAGCATCGTGCATGATGCCTGCGATTTGGCGCATGACAGGCCGCATGTTCTTGACCTTAGCGGAGAGGTTATTAAGCAGCGTCTTTACTTCTTTGTTGTCAACTGTGATTTTAATCATGTTATAATTATACCATGCAGTTTGACCATGATGAATACAAGCAGGCTCTTGTTAAGATATTAGACGCCTCATGGCAATCGCATTGGTATGTTATACACCAGAGCGTCAGCATGATTATAGATGTGGCAAGGACGTATCTGTGGACATCTTCTGCAATAGGTGCGGTAAGCGTGTTTTTGATTAAAGATATAGGGCTGATGCAGTGGTCAAGATGGGCTTTGCTTTTTGCCATTGTCTTTGGCCTGGCGTCATGCGCATTGTCTTTATGGGTGCTGTGGGGGCGTGGATATGTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCATCTGAACCATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 1708203-1717226 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1708203 29 100.0 37 ............................. CTAATGCACCTATCACAGTGAACAGGAGACGTCCTGC 1708269 29 100.0 35 ............................. CTCTCATCAGCTTCTTGCAGTCCCTGTAATTGCTC 1708333 29 100.0 36 ............................. TTTTGAAAAGGTATTCTATATTATTAACGAGTGAAG 1708398 29 100.0 36 ............................. CTCTCTGGACATATCCTGTGCTTTGCCTTTGGGTAT 1708463 29 100.0 37 ............................. CTACAGAATAGTTCGTTCTATGCTCAAAAGGTAGTTT 1708529 29 100.0 36 ............................. GCAATTCCTCTTTTGCTTTTTCCCAATCTGCTTGGC 1708594 29 100.0 35 ............................. TTACTGCTTGAACGCATCTCCTTACAATCCTCTTC 1708658 29 100.0 35 ............................. AGATTATCCTCTGCTAATGCTGATTGCTTATCCTC 1708722 29 100.0 37 ............................. CTTACACCTATGCCGTGATGTTACCAGTCGATCTTAA 1708788 29 100.0 36 ............................. CCCGACAAGTGGGGCGACAAACCAGCTTATTTCGAG 1708853 29 100.0 35 ............................. GCTATGAGACGAGTTGGTATGATTACAAGCGTTCC 1708917 29 100.0 36 ............................. CATCTGTCGAGCATTTGTCAATTATTGCAGTTTCAA 1708982 29 100.0 35 ............................. ATGTGTTTACTTTTTAGTGATAAAGACTATGCTGT 1709046 29 100.0 36 ............................. ATTGCAAAGTCTACAAATCGACGCCTCGAGACGCTT 1709111 29 100.0 36 ............................. ATTTTGAAATTCCTGAAGATGTTATATCTTCTTTTA 1709176 29 100.0 36 ............................. TTTTGATTAAATTTTCTCTTTTTGTGCCTTGTCATT 1709241 29 100.0 34 ............................. GCTTTTTCTTGATTACATTTTTGTTTCTCATTGT 1709304 29 100.0 38 ............................. ATACCTCCTCCTAACTCTTAATTTTGCCCAGAAATTTC 1709371 29 100.0 37 ............................. TACTCGTCGTCGGCATTGCTACATTTGCAATACGTGG 1709437 29 100.0 36 ............................. ATACCAACTCGTCTCATAGCCCCAGCCGAAGGAATG 1709502 29 100.0 37 ............................. AAATCATCTCTTGAGATATAGCACCATCGTTTTTCCT 1709568 29 100.0 36 ............................. TCAGCATAGAACGAACTATTCTGTAGCCCGTGATAG 1709633 29 100.0 35 ............................. GTTGTTCGGGAAGGAGCACTTGGGTGTGATACAAA 1709697 29 100.0 37 ............................. TATGTTAGAAAGAGATTTGTTAGTAAAGGTTTATGAA 1709763 29 100.0 37 ............................. GTGTGCTTGAGGGCATCTGAGACCATCTCTCGTATTG 1709829 29 100.0 36 ............................. AACTGCTCACTCGCATTTATGCAGTGAGCAGTTGAC 1709894 29 100.0 37 ............................. CCCCATAAGCCCTGTCCCTCCTGTGCCTGTCCTTGGC 1709960 29 100.0 37 ............................. ACCCCTTAAGACCTGACCCTCCCATGTCCTGCATTGT 1710026 29 100.0 34 ............................. TCACAAAACAAAAAAAATGAAATAAAAAAACATA 1710089 29 100.0 36 ............................. GATTGCACGAGCTGCCTCTATTACATCTGCAAGCAT 1710154 29 100.0 37 ............................. CATATATCTCTATGAGCGCCTGCATCTGAAGACCACT 1710220 29 100.0 38 ............................. TCAATATTAGTATAGACTTTGCGTTTTTGTCTCAAAGC 1710287 29 100.0 38 ............................. TTTAATTCTCTTAATCATAATAACTTAATCCGCACCCC 1710354 29 100.0 36 ............................. TTGATGTATTGCATTGGCTTGAGAGATTTTCAGACA 1710419 29 100.0 36 ............................. TCTAAAATCTCATACTTGCTTAGCAAGGATCTTGCG 1710484 29 100.0 36 ............................. CAATCTCAGATTTTTACAGCCGAAAGATTTGTCGGA 1710549 29 100.0 36 ............................. TTGGCTCTGACGATAGAGATATGTCTTCAGGCTTAA 1710614 29 100.0 37 ............................. CAATTGGGTGTCAACCTCAATTGGCTTCTGACCGGCG 1710680 29 100.0 35 ............................. AAGGCACGGTGTCCCGATCAACAAAGAATATTGGA 1710744 29 100.0 35 ............................. AAAGGGCAAAGTGTTTAAAAAGGAACAGTTAGCAA 1710808 29 100.0 36 ............................. GCTATTATCGATGCACGTCGTGCTTGCACACTTGAA 1710873 29 100.0 35 ............................. TTCCATAGCAAGTATCATGCCAACCTGTCTTAAAA 1710937 29 100.0 36 ............................. TTGATAATGCTGAGAAGATTAACGATTCAAGAAAAC 1711002 29 100.0 38 ............................. GGGGAGACATGCATTGTCATTAACGGGTCATTACCTAT 1711069 29 100.0 37 ............................. GCCACATGATTGTGGGCAGTGCTACTGCAAAGGTTTT 1711135 29 100.0 39 ............................. TTGCCATAGTATAAGTATATCATATTAGCTCCTTATGAG 1711203 29 100.0 35 ............................. GCAGCGGGGCACTGGCTGCACGGCTTATAGTCGTA 1711267 29 100.0 36 ............................. CATAGTAAATCCTGACAAAGCTGTTCCTGTCAATCC 1711332 29 100.0 38 ............................. ATGTGCCTTTTTCTGTTGCCGTGTCAAGTCCTGTCTTT 1711399 29 100.0 36 ............................. GATATATCATATTAGCTCCTTTTAGCTCCTTATCAA 1711464 29 100.0 36 ............................. TTCACAACCTCCGCCAGCCCAGAGATAACCACACTC 1711529 29 100.0 36 ............................. GAGATAACCACACTCAGGGCAACAGACACTTTCAAA 1711594 29 100.0 34 ............................. TTGCCTCCTTTCTTTGTTTTTTATTGCATCCGCA 1711657 29 100.0 38 ............................. GAAAACTGGAGATTATGCTTGTTCTGCTTGAAAAGTGC 1711724 29 100.0 36 ............................. ATGAGCTACCCTGTCAGGAATAACCTTCTCTGCAAG 1711789 29 100.0 36 ............................. CTGTCCATGTCGGCACATCCGTATCTGTGAGAGTAT 1711854 29 100.0 37 ............................. GTAATTGGGATAATGATAAATATTACACTTTTTCATA 1711920 29 100.0 35 ............................. GATTAATGTTAGAGTGCGTTTTTATAGTCCTCGTG 1711984 29 100.0 36 ............................. TGCGCGGGATGTATCAAAATCACCCATTCCAAATGT 1712049 29 100.0 38 ............................. TTCATGTGGTAGTAGTGCTTTGCCCTTGCAATCATTGT 1712116 29 100.0 36 ............................. AAGCCTTGAGGAAAGCATAGACACCAGCACACCAGC 1712181 29 100.0 36 ............................. GCCAAGCTTGGAGGAGCGAAGGCACGAGCTTGCCTC 1712246 29 100.0 37 ............................. GAGACTGCAATCAGAAAATGTATGTCATGAAGTATAA 1712312 29 100.0 33 ............................. TCCTTTACTTGCATCAAAAAATCTTTCTATTTC 1712374 29 100.0 38 ............................. AGGGCGCAGGAAGGAACAACAGCAAAGGCTTGGAACGC 1712441 29 100.0 35 ............................. CGGGCTATTTGCCTGCTAATGTCGAGCCAGCAAAA 1712505 29 100.0 34 ............................. ATCTATTATCAGTTCTGTCTGTATATTTTTTTGT 1712568 29 100.0 36 ............................. ATGAGGCAGATACTACCTCTGAATATGCTGTTGATG 1712633 29 100.0 37 ............................. CTTGGGTGGCTGTCTGATTGGATTATGTTTGTTCTTC 1712699 29 100.0 36 ............................. CGGCTGGGGCGTTGGCTGCACGGCTTATAGTCGATA 1712764 29 100.0 37 ............................. TTATTGCTGCAGCAACCCCGAGAAGTGCAAGCCCGAC 1712830 29 100.0 36 ............................. GCTTTTGCAACATTGCATCACTTGCAAAAGCTGGCT 1712895 29 100.0 35 ............................. AGATGAAAGCGAAACTCAAACAATACCTCGAAGAA 1712959 29 100.0 35 ............................. ACAGATACCTTATCGCTTTCATTGCAAGCTCCATA 1713023 29 100.0 36 ............................. AGTTTGGTATGCTTGAAGGATCTTCGACATATACGC 1713088 29 100.0 35 ............................. TTGATGGCGGAGAAGATTTTTTCAACTCCCCTCGG 1713152 29 100.0 35 ............................. TACCCTCGTTGATGTTGAGCACTCACTTTTTGCCA 1713216 29 100.0 34 ............................. GCTGATGTGTTCACTCTTTTAGTGATAAAGATTA 1713279 29 100.0 36 ............................. TGTTATATAACAAGTATCATGCCAAGTTGTTTAAAA 1713344 29 100.0 37 ............................. AAAGATGGAGGCGTGGGTACTGTCACAGCCAAAGAGC 1713410 29 100.0 37 ............................. GATGCAAAACAAAGTGAGATTGTATCAATGATGCCGT 1713476 29 100.0 36 ............................. GACACATAGAGTGGTCGAAGTCAAAGATATACAGAC 1713541 29 100.0 36 ............................. TGTTGCATCAAGGATTCTACCGCTATACCCCCATTG 1713606 29 100.0 37 ............................. CCGCCTCTGCCATCAGGGACAAGCTCATCACAATATG 1713672 29 100.0 36 ............................. TTTCCGAACATACTCCGAACAAACGCCGTCCGTGAC 1713737 29 100.0 36 ............................. CCGAACATACTCCGAACAAACGCCGTCCACGATTGG 1713802 29 100.0 36 ............................. AGATTTTAGACCTTGCGAGGAGCATTGGTGACATAG 1713867 29 100.0 36 ............................. CTGAAATGGAAATCTCTTTTAACTCTCCTCAACCAC 1713932 29 100.0 35 ............................. TTCATTTAGCGGTTCGGGAATCGGTTGGTTATTAC 1713996 29 100.0 36 ............................. CTCCAGGAACAGTCATAGGCTATGTGCATCCCCACT 1714061 29 100.0 36 ............................. TGATACAGAGATGTTTGTTTCTGCACTTCTTCAATG 1714126 29 100.0 36 ............................. CAATCAGGGATGTAAGGACTGATAGCTATGATTTCT 1714191 29 100.0 36 ............................. CTTACAGACCTGTTGACCGTTGATAGTCTTGCAGGA 1714256 29 100.0 36 ............................. CTCAATGCTTGATAGCCAAAAATCAGGTATAAAACT 1714321 29 100.0 35 ............................. AAAACTGGAAAGCAGGATATTTGGGATGACCTTAT 1714385 29 100.0 36 ............................. TCTTTCTCTTCTGTCAAAGACAGATGAGAGAGAATC 1714450 29 100.0 38 ............................. ATTGCTTGAGATTGATGAGTTTACACAAGAGAGGATAG 1714517 29 100.0 38 ............................. ATGTCATATGCAATGCAACAGTTTGGGGCACAGTTATA 1714584 29 100.0 36 ............................. AATAGTTGATAATGCGTATTATCGTTATAGTTATCA 1714649 29 100.0 37 ............................. CTTTTCGAGTTGATGTCAATACAACTGTAAAATCTCC 1714715 29 100.0 37 ............................. TGGCTGGGGCTATGAAACAACATGGTATGATTACAAG 1714781 29 100.0 36 ............................. TTCCTGATGTTTTGCAAAATTTTCAATATCCTGATA 1714846 29 100.0 36 ............................. CAAGCGATGGGCATTCTTGCTTCTGCGTTTTCAGTG 1714911 29 100.0 35 ............................. AGCAGCAGCGGGGCACTGGCAGCGAGACTTATTGT 1714975 29 100.0 36 ............................. ATGCAAAACAAAGTGAGATTGTATCAATGATGCCGT 1715040 29 100.0 36 ............................. TTATAAATTTGTCAAGGTTGTTCGGGAGTCTGCACT 1715105 29 100.0 36 ............................. ATGCAAAACAAAGTGAGATTGTATCAATGATTCCGT 1715170 29 100.0 36 ............................. AACTGCTCACTCGCATTTATGCAGTGAGCAGTTGAC 1715235 29 100.0 38 ............................. TTTGACTTGGATAATATACTCGTAGAAAAAACAGAAAA 1715302 29 100.0 39 ............................. GCGATGTTGTAACGGGAGACGTTGTTAAAGACTTTATAG 1715370 29 100.0 37 ............................. AGGATTAGAACTAAATGCAAATACAAGCTGGGCTAAA 1715436 29 100.0 37 ............................. GAACAGGTTAGAAGTTTATAACGATGCGGTTCTTCAT 1715502 29 100.0 37 ............................. ACAAAGCTGTTCCTGTCAATCCTGATAATACTCAAAC 1715568 29 100.0 35 ............................. GGGGTAGGAGGTAGAAAAATGGGTAGAGGAAAAAC 1715632 29 100.0 34 ............................. CCCTGATCCTTTCATGCCTGTCTGACAGGCTGAG 1715695 29 100.0 38 ............................. GTTCCTGTCAATCCTAATGATAATAACACTACTCAAAC 1715762 29 100.0 37 ............................. ACCGTTACGCAAAACATCAAGAGCATCTTGTAAAACC 1715828 29 100.0 36 ............................. CAATGAAAATCTTGATTTCGTTTATCGTCATACTTC 1715893 29 100.0 36 ............................. ACTGCTCACTCGCATTTATGCAGTGAGCAGTTGACA 1715958 29 100.0 37 ............................. CAAGGCACGGCTAAATTCGTTGCTGCGTCGGCAAAAG 1716024 29 100.0 36 ............................. CGCGATGGCCGCCATACCATACCTCTGTTACTCTAT 1716089 29 100.0 37 ............................. ATGACACAATAGAAATAAAAACAGTCGCAAATGCACC 1716155 29 100.0 39 ............................. ACGCATCTGTCGAGCGTTTGTTAACTATTGTAATTTTAA 1716223 29 100.0 34 ............................. ACTGCTCACTCGCATTTATGCAGTGAGCAGTTGA 1716286 29 93.1 37 .AC.......................... CATTCGCTAATCTACAAATCGAAGACTCAAGGCGTTT 1716352 29 100.0 36 ............................. GAGGTATTGAGATGTAATAATGGAATTTATCCAATC 1716417 29 100.0 36 ............................. GATAGAGCAGAAATATCCTTCCGAGCCTCTGTTTAT 1716482 29 100.0 36 ............................. TTCAGGTGGTGGATGCGTATACCATGTAGGTTTTCA 1716547 29 100.0 36 ............................. TTTCTTGGGCGTTGTCTGCGGGGTTGTCTTTCTTCA 1716612 29 100.0 37 ............................. AGATGCTGATAGGTAGAGGGTCTGAAGGAGAAAGCAA 1716678 29 100.0 35 ............................. CGAACATTTCTGACGGTGTTTGTTCGGAGTATGTT 1716742 29 100.0 37 ............................. CCGATGCGGGGTTTCTGGGCAATTCACTAATCGATTT 1716808 29 100.0 35 ............................. CAGGTTTTACAAGATGCTCTTGATACACTTCGCAA 1716872 29 100.0 35 ............................. CACACTCAAACGGCTTGGTTATCGTATTGTAGAAA 1716936 29 100.0 36 ............................. ATGAAATCAACGCAAAGATTGCAGAGCTTGACACAA 1717001 29 100.0 36 ............................. TTCACAACCTCCGCCAGCCCAGAGATAACCACACTC 1717066 29 100.0 36 ............................. TGCAATCGCTGCTTGAGTATTAGATTTGTCAGAGTG 1717131 29 100.0 36 ............................. CATCTGTCGAGCATTTGTTAATTATTGCAATTTCAG 1717196 29 96.6 0 ..........................G.. | T,T [1717219,1717222] ========== ====== ====== ====== ============================= ======================================= ================== 139 29 99.9 36 CTTTATATCCCACATGGTTCAGATGAAAT # Left flank : GTTGGCTATTGTTACCGCATCCCTGATGTCGCTCTTGGCCGAGGAACTTTCGTCAAGCTCTCTTTGATGTCTTAACGCCGTTGTCCTGACAAACCTAACTTCATACCCCTTGTCTTTACCAAAATAAGCTATCTTCCTCCAATAATGTCCTGTCGGCTCCATGCCTATTAACACATCCTTGAATCCTTTTTTCTTTTTCATCGCTTCTATTATCTTTGAGAAAAAGTTAAAACCTTTCCTGCTGTTGTATATACGGGAATACTTGCCCAATACCTCTCCGTCTTTGTTCATCAGACACATTGCATTAAATTCGTTCCCTATGTCCATCCCAATCACCAGTGTCGTCCTCTTTACTCTTTGACGCTTTGCTATCTGCTTGTTATAATTTTTCCCATGCATGACAATTACCTCCTCTGTTAGGTTTTTCTTGGTCGATTACCTTAACAGATTGTAATTGTCATGCTCTACTTTAGCTCACTCCCTTATAGTAAGCTGATTAA # Right flank : TTGTCAACACATTTGACCCCTTTTATGCAAATAAAATTGACCCCCTTTTGCCGTTAAAAACGGCACTATTTGATTTCTTAACTTTTCTGCCCTTCTTCCAATCCATTCAATTTGCCTTCTTCAATTTGTTCTTCAGTCTGTAGCTTTCTCCACTTATATAGAATATGCTTGCATGATGCACAACTCTGTCTATTATGGCTGAGGCTACAACAGGGTCTTCAAATACCTTTCCCCATTCGTCAAAGTTGTAGTTGCTTGTAAGGATTATTGAGCCTTTTTCGTATCTCATTGAGATGAGTTGAAACAGGAGATTTGCCTGCTCTCTCGTTATCGGCATGTAGCCCAGTTCATCTATTATCAGCAGGTGGAGCCTTGAGTAAAAGAGGAGTCTTTCTACAAGGTTTCCCTGTCTCTTTGAGAGCATGAGGTCTTCTATGAGTCCTGGGCTGTCATAAAGAGCACCCTGAGCCTTGCTGTGCATGCCTTTATGGCAAGCCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACATGGTTCAGATGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 1719714-1721704 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1719714 29 100.0 37 ............................. CAAGCTGGGCTAAATGGACATTAGAAAAAAGATACGG 1719780 29 100.0 35 ............................. ATCAATATTAGTGTAAACCTTACGCCCTTGCCATA 1719844 29 100.0 36 ............................. AAATACCCAGTTTGTCGGTCAGCCAGCCGAACATTG 1719909 29 100.0 38 ............................. AAAAATTGATGAAATCAACGCAAAGATTGCAGAGCTTA 1719976 29 100.0 37 ............................. CTACAGAAGGAGGTGATGCCTATAGAGCAAGCAAATG 1720042 29 100.0 36 ............................. CTCCCATAACAAGTCGAACAACAGCTATACGCCCCA 1720107 29 100.0 37 ............................. ACAGGTGTTTCACTGTCCCGTTTCACTTGTTTCAGCG 1720173 29 100.0 36 ............................. ACATCACGAGCCGCATCCACCCAAAACTTGTCTTGC 1720238 29 100.0 35 ............................. TAATAATAATAGTAACAATAATAACAGAAATGAGA 1720302 29 100.0 35 ............................. TAATAATAATAGTAACAATAATAACAGAAATGAGA 1720366 29 100.0 36 ............................. CGGCTAAATTCGTTGCTGCAAGCGCAAAAGCAGCAG 1720431 29 100.0 36 ............................. AAGAAATTACTGCAACTGTAAATGTCTTCGTTGCGT 1720496 29 100.0 36 ............................. TTGGCATGTCTGATGTGTTCTGTCTCTTTTCTGATA 1720561 29 100.0 35 ............................. TGGTATGATTACAAGCGGTCATGGACAAGTTGTTC 1720625 29 100.0 36 ............................. TGCAAAACAAAGTGAGATTATATCAATGATGCCATC 1720690 29 100.0 35 ............................. CGATGCGGGCTTTCTGGGTAACTCCTTGATAGATT 1720754 29 100.0 35 ............................. TACCATGTTGTTTCATAGCCCCAGCCTGAAGAATG 1720818 29 100.0 36 ............................. TGAACGAACATAATCCAATCCGACAGCCAGCCGAAA 1720883 29 100.0 38 ............................. TCATACCATGTTGTTTCATAGCCCCAGCCAAAACTATG 1720950 29 100.0 37 ............................. TCACAATCAGGCAAACAGGTTCAGGAGAGTTGTTGTA 1721016 29 100.0 37 ............................. GTGATACGGGCTCTCAAACAGGCGGTAATACTCAAAC 1721082 29 100.0 38 ............................. TAAGTAAGATCATAAAGGCATTGCAAAGGATGAAAGAG 1721149 29 100.0 37 ............................. AAAGCATATAATCACGAGTTCGCATGTTCACAGTATT 1721215 29 100.0 38 ............................. TTGCATGGCAAGTGAGATTAAAAAGCACTCAATCAATA 1721282 29 100.0 38 ............................. GAGGAGTTCTCTGACATTCCTTGCTAACCTTGCAAGTT 1721349 29 100.0 37 ............................. GACGGTTTGGTCTGGTTTGCAAAAGTTTGTAAACTCT 1721415 29 100.0 35 ............................. CAGGTTCCGACACTCAGGTATTTCAAGAACAAGCA 1721479 29 100.0 35 ............................. TACCTGAAGAGCATATAGATGAAGTAAGAAGACTG 1721543 29 100.0 37 ............................. TTTCCAACGGCTGTTGAATAACAGATGTTGTAGCAGA 1721609 29 100.0 38 ............................. GACCTCCAAATGACTTTGAGGCATTGAGTTCTATTATC 1721676 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 100.0 36 CTTTATATCCCACATGGTTCAGATGAAAT # Left flank : TTTGCCAGGGAGGTCTCTACCCTCGTTGTTGCAGGGTCTTGACCCGTTCTCCTTCCCTTATCCCTGACAGATAACGATGCACAGAGCAAAGAGAGCCTCCGTAGCCCTGTTCCTTGAGCTCATTGTATATCCTCGTGCCAATGAAGCCCTTTTGAGCATCTCCTTTATCACTTCCTCATAAGGGTCAAGTAGCCTTTCATACTGCCTTGCTTTGAATTGCGGAGGTTCATCCTTCCTCAGATACTTCCTCACCGTGTTCCTCGATAGCTTCAACTGCCTCGCTATCCCCTTAATGGTCTCACCCTTCTGCCTTAATACCCTTACCTGCTGCCACTTATACATGCTTATCACCCCTTCTTCTCCTTTCCCTGTTTATTTGAAAGGAGATTATAGTATTGCAGGGGGTCATTTTTATATGCCGATCAGGGGTCAATTGTATTTTACGATCTACAGTTCAGATGAAATTAGAGATATAGTAACTGCGTTCAGATTTCTTGTTT # Right flank : TCCAGTTGTCAAAGAGCTATAGAGATATCCCCCAAAGCTTTTATTTACAACTATCTTAACAGTTTTTGATCCTGATGTAAACAGCTCTGAAATGAAGTTTTTTGCATCAATCCTTTAATCGTGTTTTTAGATTTCGGTAAAAAACACCTTCAAATCCTTGCCTGACAAGCATATCAGCCTCATATGATCAACATCAGGTTTGATGCAATGCAAAATTAAATGCAATTTCCTTGCCTATTACCTACTATTTTTTTGCCTTTTGCCTCTCGCCTTCAGCCTTTAGCCTATAATATATTCCCTGTCAACTCCTTTTCAACGCCCATAACAGTCTTCCGATAATTCAGGCGATTCTCAAGGCTGTAGAAGTAGATGGAATCCTCCTCTTTATTGATAACCTGCTCTAATTCAAGCCTGCATTTCATAAGCTTCCCCTCGGTAATGTCTCCTTCAAAAACCGAGTTCTGCACCCATGTAAAATACTTCTTCAAAATCTTTCTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCCCACATGGTTCAGATGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 8 1737298-1737890 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022873.1 Dissulfurispira thermophila strain T55J chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1737298 36 100.0 36 .................................... CGGTGGGCAGTATAGATACACTGAAAAATATACCAA 1737370 36 100.0 30 .................................... GGATAAAGGAGTAAAGAAGTTCACCCTCAG 1737436 36 100.0 33 .................................... AAAGGGAGACTCTTTATCACCTTGACCCCTCAG 1737505 36 100.0 34 .................................... GGTATGAGGTGATAATAGAATAATCGGGGCTCGG 1737575 36 100.0 32 .................................... ATTGATGTAAAAGAAATATACGGCGGAGAAAC 1737643 36 100.0 33 .................................... GAACTTAAGGATATTTAAAAGTGGTGACATAGT 1737712 36 100.0 37 .................................... GAATATAGAGCTGAAGTTATAGCATAACCCCATAAGA 1737785 36 97.2 34 ......A............................. ATCTAATAGAATTATATCCTTAATTAGGATGCAC 1737855 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 9 36 99.7 34 GTCGCAGTCCCTTCTAAATGAGGTCTTCTTTCCTAT # Left flank : CATAATAACTTACCCACTTCTTCTATTATCGCCATTAATTCCTTTATGGTTGCCTCATCTATATAATCTAAATCAACAGAGAATTCTAAAAGATATTACACTTCTGCTATTGAACCAAGGGCTATGTCTATAAAATGAATAAACTCTTTCTTGCTCTTTCTGTTGTAGCCTTCAACTATGTTTGTTGGAATTGATAAAACTGCCCTCCTTATTTGAGAGGTTAATGCGTATTGTTCATGCCTTGGAAAACTTTCAATTAATCTATAAACCATCAATGCAAGCTGATGAGCCTTTTGCCAGACAATAAGGTTTTTATAATTAGCCATCTAATGTTATACCATTTTCTTCAGCCTTTAGCCTAAAGCCTAAAGCCTGCCTTTTACTCGCAATCCCTTCAGCCCAGCAAGGCTGGAGTGAAAGATAGGCTGGAGTGAAAGATAAAGTGAAATAAAGTCCATTGCTCCTTTTCACTTTATCTTTGGCTCCGCCGTAGGCGGGCT # Right flank : TAGCACCCCCTGAAATTATCCCTATATTTCAATAGGTTACAAAGAGGGTTGTTGACATTTTCTGTCACTGCTATAGTAAGTGAAAAAATATTTCTAAAATGTTTTAGGATCACAGTTGTCAAAGAACTACTTTATAAATACCATATTATAAATACCATAATAACTTTGATTAGTCAATACCCTGTATAAGATATTGATTTTAAAATAAATTCACTCAAAGACTTTTTCGAAAATCCTATTTCACTTTCCTCAAAAAATCGATTTTCGAAGATTGCCTTTTTTGCCTCATGGCAACCTCTTGATTTATAAATAAATTTTTTTGCCCTGAAATCGTCATTAAGTCAGTCATCCTGATGGCAAATGCCTGAAGGCTCTCATTAGAATTTATTATGGTATGCAGAATAAAGACCTTTTCGTGCAATGTGGTATTGCCCATTAATTAATCTTCCGTTCACATGAATCGGATAGCAACTACCAATACCTTCAGACAGTTCATCAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCCTTCTAAATGAGGTCTTCTTTCCTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //