Array 1 334828-335953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWYY010000001.1 Salmonella enterica strain FUA1894 NODE_1_length_459961_cov_37.474243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334828 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 334889 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 334950 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 335011 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 335072 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 335133 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 335194 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 335255 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 335316 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 335377 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 335438 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 335499 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 335560 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 335621 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 335682 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 335743 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 335804 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 335865 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 335926 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 352212-353753 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWYY010000001.1 Salmonella enterica strain FUA1894 NODE_1_length_459961_cov_37.474243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 352212 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 352273 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 352334 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 352395 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 352462 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 352523 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 352584 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 352645 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 352706 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 352767 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 352828 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 352889 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 352950 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 353011 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 353072 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 353133 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 353194 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 353255 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 353316 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 353419 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 353480 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 353541 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 353602 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 353663 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 353724 29 96.6 0 A............................ | A [353750] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //