Array 1 134324-135999 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOT01000004.1 Cronobacter sakazakii strain MOD1_LR752 LR752_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 134324 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 134385 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 134446 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 134507 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 134568 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 134629 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 134690 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 134751 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 134812 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 134873 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 134934 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 134995 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 135056 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 135117 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 135178 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 135239 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 135301 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 135362 29 100.0 32 ............................. AAATGTGGGCCAGCGGCAAAAGCATCTACTTC 135423 29 100.0 32 ............................. TAATACCGCCGATTCGATCCACTCCGGCTTCC 135484 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 135545 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 135606 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 135667 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 135728 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 135789 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 135850 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 135911 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 135972 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20157-21650 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOT01000005.1 Cronobacter sakazakii strain MOD1_LR752 LR752_contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20157 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 20218 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 20279 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 20340 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 20401 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 20462 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 20523 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 20584 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 20645 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 20706 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 20767 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 20828 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 20889 29 100.0 32 ............................. GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 20950 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 21011 29 100.0 32 ............................. CCAGTTTCTCAACGTCCAGGCACGTGTGACGC 21072 29 96.6 32 C............................ GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 21133 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 21194 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 21255 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 21316 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 21377 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 21438 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 21500 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 21561 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 21622 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77375-76625 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTOT01000011.1 Cronobacter sakazakii strain MOD1_LR752 LR752_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77374 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 77314 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 77254 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 77194 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 77133 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 77073 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 77013 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 76953 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 76893 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 76833 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 76773 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 76713 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 76653 28 85.7 0 ......................C.T.TC | T [76631] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //