Array 1 46362-44742 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFDU01000014.1 Neisseria meningitidis strain 2842STDY5881485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 46361 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 46295 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 46229 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 46163 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 46097 36 100.0 30 .................................... TCCATGTGAACTCGTTGGCGCGTTCGATGA 46031 36 100.0 30 .................................... TAAACCTCTGTCGGTTGGTTTGCTTAGATT 45965 36 100.0 30 .................................... CGAATTGGAAAAGTTGCCCTACCGGTGGGG 45899 36 100.0 30 .................................... GTCGCATGGTAAAATAACCACCGCTTTACA 45833 36 100.0 30 .................................... AAACTAAAACTTTGGAAAGTTGGAAAGTTG 45767 36 100.0 30 .................................... CGGCGCATCCCCTTTAATTTAATATCACTT 45701 36 97.2 30 ............A....................... ATAGAACCTATGGCTGCTACGGCGTTGACA 45635 36 97.2 30 ............A....................... TTTTGTGGAGTTTTGTTATGAGTGAGGGCA 45569 36 100.0 30 .................................... AAGCATTGACGATATTTGTGTGGCGTTGCA 45503 36 100.0 30 .................................... AAACGCCGGTAGGTTTCGTCTGTCTCCATA 45437 36 100.0 30 .................................... CTGCAAGCATTTTCATCATCGGCTGTCGTA 45371 36 100.0 30 .................................... GGAAGAGCGGCATCTGAATGCGGAAGAAGA 45305 36 100.0 30 .................................... CATCAAATCATCCGCCGCGATTCGATCGCA 45239 36 100.0 30 .................................... ATGATGCCGAAACCCTGCAAGCCCTGAATA 45173 36 100.0 30 .................................... GCCTGATGCCGTGTCGTGCGACACCTGAGA 45107 36 100.0 30 .................................... AGTCAATGAATCACTAAAAGCCAAGTCAGA 45041 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTCCTTTACA 44975 36 100.0 30 .................................... TTTTTCGATTTTTTATATTGAGCGTTTTTG 44909 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 44843 36 100.0 30 .................................... CAAATGGGTGCGCTTTACGCCGTATGACGG 44777 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCTCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 1 1586-1344 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFDU01000032.1 Neisseria meningitidis strain 2842STDY5881485, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================== ================== 1585 26 100.0 50 .......................... CGGCTTGTACGGTTTCGGTTTTTTTTTTGAGGTTTCGGGCAACTTCTAAA 1509 26 100.0 42 .......................... CAGACCTTGGGATAACGGCAATATTCAAAGGTTATAAAAGAC 1441 26 100.0 46 .......................... TAGAACGTAAAATCTAAAGAAACCGTGTTGTAACGGCAGACCGATG 1369 26 96.2 0 ..............T........... | ========== ====== ====== ====== ========================== ================================================== ================== 4 26 99.0 46 CCGTCATTCCCGCGCAGGCGGGAATC # Left flank : GTCATTCCCGCGCAGGCGGGAATCTAGGTTTGTCGGTGCGGAAACTTATCGGGTAAAACGGTTTCTTTAGATTTTGCGTTCTAGATTCCCACTTTCGCGGGAATGACGAAGAGTTGCGGGAATGATGGAAAGCTATGGGAATAACGAAGGGTTAAAGTAATCACGGGATGGTGTTCGCGGGAATATAAATTTAAATAATTCAAAAGGGTGTTATATGCAGCCTGCGGTTTATATTTTAGCAAGCCAACGTAATGGCACGTTATACATTGGCGTTACATCTGATTTGGTGCAACGTATTTACCAACATAGGGAACATTTGATTGAGGGATTTACATCACGGTACAACGTTACTATGCTGGTTTGGTATGAACTGCATCCTACGATGGAGAGCGCAATTACTCGGGAAAAACAGTTGAAGAAATGGAACAGGGCTTGGAAATTGCAACTGATTGAAGAAAATAATGTTTCTTGGCAGGATTTATGGTTTGATATTATTTAGC # Right flank : TAGACTGTCGGGCATCTGCAGCGGTTTGCTAAAAAACGCTTTACCGTGATCAGTGTGCAAAGTTAAAATGGGGAGGTAAGCTTTTCAATCAGCAATTCGGCGGGCGCGGAATCGGGCGGTTTACCGAACCCCGGCGTTCGCGGCGCGCCGCCCCGTCCCGTGAAGGCAAACTCAAGGAATAAAAGATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGGCGGGGGGGGCAGGCGCAAGCGCAAACGTATCCATACGCTCTTGTAATGAACGGACAACAGCTGCCTGAGGTAAAGTGGGGGAATTCATATAATCAATTGACGCACAAAAACAATACCCGCCAAGCTACCTTTCATTCATATTTTCAGGGAACTAGAAAAAAAACTACTTTCTCATTCAATAATACCGATGAAGTTGTTGCTCAAAAAAACGGTGTTACCGTTTTCGGCGCGGCGA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTCATTCCCGCGCAGGCGGGAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //