Array 1 33-259 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373192.1 Xanthomonas vasicola pv. vasculorum NCPPB 1381 scf_9768_425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 33 31 100.0 34 ............................... CATACAGACCCTGCCCCCTCAATGCGCACTATAT 98 31 96.8 35 ...A........................... TGGTCTGCGTACCCGAACAAGAAGGGCCGGCAAGA 164 31 93.5 34 ..........GC................... AACGGCCCGTTGATGATTCGGCACGTGGCGCAGG 229 31 90.3 0 .............A.A.....A......... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 95.2 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CACGAAGGCGCCCGGCGTAGCCTCGCGCTCAAG # Right flank : CACTTTAGACTCGCCCGCCAGCCGGACGCTGACCAGGTGCAGGTTGGAGACGCTTGAGGCCTGCATGTAGCACGGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGCACCATTATTTGACGATGATCGTCTGAGGCGTGCCTGCAAGCTTCCCGTCCACCATCACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCGGCCACCTGGCCATCCTGGTAGGCCAGCTTCGCCGACAGGGCCACGTTGCTCGCGCTGCCGTCGGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTGGCCGGCGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACGCTGGAGACCGTCACTGCACTACCCGTCGCAGCGCCGCCATCGGTGCTGGCCGCTCCGGTG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 238-76 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373252.1 Xanthomonas vasicola pv. vasculorum NCPPB 1381 scf_9768_3652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 237 31 100.0 35 ............................... ATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCT 171 31 100.0 34 ............................... CTTTCGCCGACCTTGATTAAGCAGCTTTAGCATA 106 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AACTGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCAATTGATGTCTGAGGAGACTTGGTTTAACGCGGGTCGCGCCCTCACGGGCGCGTGGATTGAAACCGACCTAACCCTGTTACGCCTAGGCCTGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTCACGGGCGCGTGGATTGAAACCTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGC # Right flank : CTGGTAATTAGAGTCAATTGTCAAGGCGTTTTGCGGTCGCGCCCTCACGGTGTCACCAGCACTTTTAATCTGACCC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 832-605 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373252.1 Xanthomonas vasicola pv. vasculorum NCPPB 1381 scf_9768_3652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 831 31 90.3 35 NNN............................ CAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGA 765 31 100.0 33 ............................... TGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCA 701 31 100.0 35 ............................... GCAATTGATGTCTGAGGAGACTTGGTTTAACGCGG 635 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 97.6 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CGGCGTTGTTGGTCGCGCCCTCACGGGCGCGTGGATTGAAACTCAGCCGGCAAGAGACCCATATCATCCAATTTGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACTCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTTGTCGCGCCCTCACGGGCGCGTGGATTGAAACCCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGACCTAACCCTGTTACGCCTAGGCCTGCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTCACGGGCGCGTGGATTGAAACCTCGCCTGGTGCCTAGAGTACGCAGACTGGCAGGCGTCGCGCCCTCACGGGCGCGTGGATTGAAACATACCGTCGCGTGGCAAGCCCCTGTAGCTTGATCTGTCGCGCCCTCACGGGCGCGTGGATTGAAACCTTTCGCCGACCTTGATTAAGCAGCTTTAGCATAGT # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [18.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1321-1159 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373252.1 Xanthomonas vasicola pv. vasculorum NCPPB 1381 scf_9768_3652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1320 31 100.0 34 ............................... TCAGCCGGCAAGAGACCCATATCATCCAATTTGC 1255 31 100.0 35 ............................... TCTACTTGGTCTGTCATTTGCGCCCCTAGGCGGTT 1189 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCTCACGGGCGCGTGGATTGAAACCTCAATTCTGCAAGACGCTTGCGGGCGGCGTTGTTG # Right flank : CCCAGCGCAGACTGAAAGCTCGAACTGATCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCCTCACGGGCGCGTGGATTGAAACCAGCGAGATGAGGCAGAAGCGAGAGCCCGTGCAGAGTCGCGCCCTCACGGGCGCGTGGATTGAAACTGGTGGCTCTTCGGCTAGTAATCCCGTGGGCCAGTCGCGCCCTCACGGGCGCGTGGATTGAAACGCAATTGATGTC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2246-1878 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB373252.1 Xanthomonas vasicola pv. vasculorum NCPPB 1381 scf_9768_3652, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 2245 31 100.0 43 ............................... TTGAACGTCGGGATAGCCAGCTGGCGGCCAGAANNNNNNNNNN 2171 31 93.5 34 NN............................. GACTATGACCTGTCCGGCTCGGCGAGCTGGAAGC 2106 31 100.0 34 ............................... ACGCTCCTGGTCGTGACGGCGTGCGCCTACCTGG 2041 31 100.0 35 ............................... AAGGGTCAAAAACGCTCCAACGCCTGCCATGTCAC 1975 31 100.0 36 ............................... GGCCTCGGGCAGCGGTAGCCGGCTGATGCGGTCGAT 1908 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================== ================== 6 31 98.9 37 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGACTCAAGCCCCATGATGATTCTTGTCAGCTACGACGTCAGCACCAGTTCTCCCGGCGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAATTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAACAAAAAAATAAATAGACAGCGGATTCACGGGGCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGG # Right flank : CGGCTGCTGTTGTTGCTTCTCCGCACGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //