Array 1 163095-160564 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLU01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163094 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163033 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 162972 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 162911 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 162850 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 162789 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 162728 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162667 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162606 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162545 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 162484 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162423 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162362 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162301 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162240 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162179 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162118 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162057 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 161996 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 161935 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 161874 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 161813 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 161752 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161691 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161630 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161569 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161508 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161447 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161386 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161325 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161264 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161203 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161142 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161081 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161020 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 160959 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 160898 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 160837 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160776 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160715 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160654 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160593 29 93.1 0 A...........T................ | A [160566] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181217-179602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZLU01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181216 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181155 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181094 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181033 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 180972 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 180911 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 180850 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 180789 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 180728 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 180667 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 180606 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 180545 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 180484 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 180423 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 180362 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 180301 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180240 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180179 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180118 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180056 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 179995 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 179934 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 179873 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 179812 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 179751 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 179690 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179629 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //