Array 1 264090-264634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWC010000005.1 Listeria marthii strain FSL L7-0529 NODE_5_length_415294_cov_35.752806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 264090 29 100.0 34 ............................. TTTTCCGAGCAATTGCGATTGTAGGTTGATTAAG 264153 29 100.0 35 ............................. GGGAATTTTTTTAATGATTTCAACGTACTCAATTC 264217 29 100.0 36 ............................. ACAATTCCGTCATTTTCGCCGTCACTGTCCCAGTCT 264282 29 96.6 35 .......A..................... TGCACCATGTATTGTGTTTCTTTTCGCGTATAGGC 264346 29 96.6 35 .......A..................... TTTTAACACTCCTTATTTTTTATAATTATTTTATT 264410 29 96.6 36 .......A..................... GTTTCAACAGCTTTTTTCTTTTCTTCATATAAGCTC 264475 29 96.6 35 .......A..................... GTCGCTAGGGCTAAAAAATGGATTGAGGAACAACA 264539 29 100.0 37 ............................. CCTTTATAATTATCACCAATATGCGCGAATGTCTCCA 264605 29 89.7 0 ..............A.A......A..... | A [264628] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 97.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCTGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCTACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGCATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCGTGAAAAAGGCTGGGGATCGACAGGAAGTTGGGAATGGTTGGGGTGAGAGGAGTTTGGTGGTTTTTGGTTTTCAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGGAAAGTTAGCGG # Right flank : TGAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCTGACTCAACAAGATTCGAGTTTATTTTTATCCCCCTCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAATCTCCAACTACACCACACACCAAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 279565-282070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWC010000005.1 Listeria marthii strain FSL L7-0529 NODE_5_length_415294_cov_35.752806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 279565 29 100.0 37 ............................. GATGCTATACAGTGCTTGTGTGTCTGTGTGTGCCATG 279631 29 100.0 37 ............................. TTCTTTTATCCCAACCTATAGCCGTATAAGTATCTAT 279697 29 100.0 37 ............................. CTCTAATCCCTTATCGCTTACAAACCACGGTGCTTTA 279763 29 100.0 35 ............................. TTTTTCATGTGTTCGACTTCCTCTACATCCATCAC 279827 29 100.0 36 ............................. GTCAATCCCTCCGCGATAGCAATGCTCAGCTTATCA 279892 29 100.0 36 ............................. CGCCTTGCATTGGTTAAGAGGAATCGACGGTGTTAC 279957 29 100.0 36 ............................. ACGCTAACAACGAATAAAGGCGAAGGAGTTAAAGTT 280022 29 100.0 36 ............................. CTGGCTGTCATAGTAAGTTTTAAATCTTTGATTTCA 280087 29 100.0 38 ............................. GCATAGCCTTCCAAGCTGTAGCACCTTTCTGCAATCTT 280154 29 100.0 37 ............................. AACAGTATCATCACGTTGTTGTTTGTGTCACCAGTCT 280220 29 100.0 35 ............................. ACCGGATAAATCATTTGATCTTGTTTTTCTTCCAT 280284 29 100.0 37 ............................. GTTTCAGCCGCTTAAAGCTATCCCTGCGGATGACAGG 280350 29 100.0 35 ............................. TTTTGAGCGAAAGGGTGAATAAAAATGACAGCAGA 280414 29 100.0 37 ............................. GAAAAAGAGCAATTGAATTTAAGCTTCAATACATCAA 280480 29 100.0 36 ............................. ATACATGCCATAAATGACCGCAATAACCGCGCCCAC 280545 29 100.0 37 ............................. ATGCTACAACCTCAGGAACTGTCACCGAACCATTACC 280611 29 100.0 36 ............................. ACTATTGTTGACGGTGTACAAGGAATTGCAGAATAC 280676 29 100.0 37 ............................. GATGAATCTAACATTGACAATGCCGTTAGTATTTTAC 280742 29 100.0 37 ............................. ACGGCACATTTTACTGGGATAATGTGGAGAAGCGTAC 280808 29 100.0 36 ............................. AATTTATCTTCGTCTTTAGTTGACGTTTGCAAGCGA 280873 29 100.0 36 ............................. ATGGGTTATTGATACCCAAAAGGCTGCTCTTTTGGC 280938 29 96.6 35 ...............C............. AGGTAAATATGAGCTTGGATGAAAAATCTGGCAAA 281002 29 100.0 37 ............................. TCTAAATTAGCGAGTAAGAAGAAGATTGATGGGTTTA 281068 29 100.0 36 ............................. ATGTAACTTACCTCGAAACTATCTGTATCACTATTT 281133 29 100.0 35 ............................. CTTGTAGCTCTTTGTACAAGTCGCTGAGCTCTTCT 281197 29 100.0 37 ............................. TTATCCATCGCTTTTATTTTTGCTTCTGTAAATTGTG 281263 29 100.0 37 ............................. TTTTCTGTTTTTTGAATCATTCCGAAGCTCTGTAACG 281329 29 96.6 35 ..G.......................... TTTACAGCATCAATAGCACCCTCGGCCATGCTAGC 281393 29 100.0 37 ............................. TCGCTTGAGAAAGCGCATTTGCGCTTTTTTGACGTTG 281459 29 100.0 36 ............................. CTTGATTAACGGCTTTTTTCGCTTCTTGTTTGTTTT 281524 29 100.0 35 ............................. TCCAGCTTGAAAAACGGCTATGTGAATTGCGCTGT 281588 29 100.0 35 ............................. TTAATCGCTCCTGCTTGGGCGACGAGGATAGCATC 281652 29 100.0 36 ............................. TCTTTTTCATACCACAGTTCCAAATATCCTTTTCCA 281717 29 100.0 36 ............................. AACGGAATAGCTGTAGTAACATTTACATTAGCTGTT 281782 29 100.0 36 ............................. CGATTGAAAGAAGTCGTATGTCCGATAAATTTAATC 281847 29 100.0 36 ............................. AACTTGAAAACAAATGACTATCAAATGCTGTATCTT 281912 29 100.0 36 ............................. TCAAGACCGGTGTTCACGTCTGTAGCACCTACACCC 281977 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 282041 29 86.2 0 ...............C......CA....C | C [282063] ========== ====== ====== ====== ============================= ====================================== ================== 39 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAATTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATAGTTTTTTCTAGTAGACAACAAAGATGGTTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACTTGGACCCCAATCCAAGTCTTTTCCCATATCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAGTCTGCACAGTTTCCGCCATTCCAGCTCCCGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGCACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //