Array 1 108058-106258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYO01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain 95-0387 NODE_2_length_537761_cov_3.81601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 108057 29 100.0 32 ............................. CCGCGCTGGCAAAACATCAGCGCAGAAAGTGG 107996 29 100.0 32 ............................. AAAAAATCGGCGTATCTCGGCAGTACCGGAAC 107935 29 100.0 32 ............................. TCCGCGGTCTCACTGAGCCGTTTCGAACCTCC 107874 29 100.0 32 ............................. GCTTTGCTCTTTCGTAAATGACACATTGAAAT 107813 29 100.0 32 ............................. GTAATCGTCGAGAATGCCCTGCACCGCTTCGA 107752 29 100.0 32 ............................. CTCAGGTTGGAAGCCTTGTCCGGAATGATTCT 107691 29 100.0 32 ............................. TATTCACGCAGATGTTCTGGTTGGTCACGGGC 107630 29 100.0 32 ............................. TCGGCCCTGCACGCCCCACCATAATGCGAAGA 107569 29 100.0 32 ............................. CGCTGTAGCGAGGACGTAACAGGGAAAATCTA 107508 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 107447 29 100.0 32 ............................. ATATTTTGAAAGCGTTAGGCTGCGGTTGGGCA 107386 29 100.0 32 ............................. CAGAAGGGTCAATAACAATAATTGAGCCAGCA 107325 29 100.0 32 ............................. GTGGTGATGGTGCCCGGTCCGGCCGGGTCGCA 107264 29 100.0 32 ............................. CGTTAGAACTGGCTGAGTCAAACATGATGATT 107203 29 100.0 32 ............................. GCCGTAACGGCGGCACTTTTACCCACGAACTT 107142 29 100.0 32 ............................. CGATCTTTCTTTTCGATTACACCGGCATTATG 107081 29 100.0 32 ............................. TGGTGCAGCCGCGTTTAACTGGAAAGATTTTA 107020 29 100.0 32 ............................. CGCACCGGCTCCATCAATAATGACGTAAGGAT 106959 29 100.0 32 ............................. TTGCCCGGAAACTTTCCCCAGTGTGTCAGCCA 106898 29 100.0 32 ............................. GTGCTGGGCGACAGGGCGATTCGTACCTGTTC 106837 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 106776 29 96.6 32 ............................A TATCCCACAGTGATGATATGATTTCAGCGTCC 106715 29 100.0 32 ............................. CGTCGATGGCTGGGGCTTTCTCGCAGTACAGA 106654 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 106593 29 100.0 32 ............................. TCGGCCTGTGCGGTTGCGGCCTGCCATTGCTC 106532 29 100.0 33 ............................. ATGCCGCTGTGATTTACCTTCGCCAGGGGCTGC 106470 29 100.0 32 ............................. GGCAAGAAGTACTCATGGATTGCCCGCAACAT 106409 29 96.6 32 .......T..................... AAGACAACTCCTGTCTTTCCATCACTCGAAGC 106348 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106287 29 96.6 0 A............................ | A [106260] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGACCGGCGCGCTGGATCAATAAATCAATCGGCGCCAGATCGGTGATCATCCAGTCAAAGTCCAGATCGAGACTTTGTTCAACGACTTGTGTGGCGATTAATACCTTACCACGTCGTTCAGAAACGGGGGCATTGTTACCAAACCAGTTTAACGTTTTATTTTCAATAGCAATACGATCGATAAAAGCAAAACGGCTGTGGAAAAGCAAAAGATCCTGCTCTGGAACGATTCCCTCGTGTAGCAACTGCTGGTAAGTATCCAGCGCATCATCAACCGTGTTGCGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCTTTGAACTTCGGGACGTGTGGCCAGTGGTTGCTCTAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCCGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATCGCTAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118653-116915 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYO01000002.1 Salmonella enterica subsp. enterica serovar Corvallis strain 95-0387 NODE_2_length_537761_cov_3.81601, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118652 29 93.1 32 ...........A................T ACCTATAGGTAGGTTCCGTCCTGAGGTATCTC 118591 29 96.6 32 ...........A................. GATTTTGTCAGCCCGTTTAACGGGGCGACGCA 118530 29 96.6 32 ...........A................. AGGGGATCGAGGCGATAAACGCGGTGAATCTG 118469 29 96.6 32 ...........A................. TATGATGGCACCGGAATCGTCCCTAAGATCCG 118408 29 96.6 32 ...........A................. TTGCCGGTTAATGGCGTGGCGATGCCTGACAA 118347 29 96.6 32 ...........A................. AGATGATCAGGATTGCTGACGACGAATACCGT 118286 29 96.6 33 ...........A................. GGCAAAAACAGCAATGGGAACTTCATTTCATGA 118224 29 96.6 32 ...........A................. GCATCAGGCGTGGTGGCCGTGATTACGGACGA 118163 29 96.6 32 ...........A................. TTGCCGTCAGCGGCGGCGTAAGTTTTTTCTGT 118102 29 96.6 32 ...........A................. TGCCGGGGCAGTCGTGCCGATTAAGCGGGCTG 118041 29 100.0 32 ............................. AGAGATATTTTGACCTGGGCAGCAAGAGCAGG 117980 29 100.0 32 ............................. GCGATGATTATCGCCCTGATCGTCATCTGTAT 117919 29 100.0 32 ............................. AAAAAGGGCAAGACCCACACAGGAACAGCCAT 117858 29 96.6 32 .............T............... GCGATCTACGCCGTTCGCTGGGTAAGGTGCTG 117797 29 100.0 32 ............................. TGCGCTTTTCGAATTCGCTTACATGCTGGGGA 117736 29 100.0 32 ............................. GCTGTGATGTTGTTTTTTTCAGGCTGGGCTAC 117675 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 117614 29 100.0 32 ............................. CATGTGGCAATTGCGCCGGGGACAAAAATCAC 117553 29 100.0 32 ............................. CACTCGCGCAGGTTCATATTGAGTTTACGCCA 117492 29 100.0 32 ............................. CTACAACATATACGGATAGTCGTTTCAATCAG 117431 29 100.0 32 ............................. CCCGCCGCCGTGGGGAGATCTCATCCGGCGTG 117370 29 100.0 32 ............................. CGTAAATCTAGATCCTCTTTTATTTCGTACCC 117309 29 100.0 32 ............................. GTTGATGCCAAACCAATAATCGCTGATACCGC 117248 29 100.0 32 ............................. GTCGTAACAGGCGACAGAGTCGTGCAGGTTAC 117187 29 100.0 32 ............................. TGTCCGGGGCTAGCGGGCAAAACGTGACGTCG 117126 29 100.0 33 ............................. AAATGCCAATGGTTCTGACGCTGGAACAGTTGC 117064 29 100.0 32 ............................. TGCGCGGTGCTGTCTACGAAATCAATATCCGA 117003 29 100.0 32 ............................. TGCGCGGTGCTGTCTACGAAATCAATATCCGA 116942 28 86.2 0 .......T....T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCACCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //