Array 1 35751-35363 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOMO01000012.1 Acetobacter orientalis strain DmW_045 contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35750 28 100.0 32 ............................ TCTCAGGAATTGGCGGCTATAGATGACAACGC 35690 28 100.0 32 ............................ TATTGGCCCAGACTTTGGTGCCACGTCTCGAC 35630 28 100.0 32 ............................ ACAATCAGCGACGCAATGCAGCGCGTAATTGC 35570 28 100.0 33 ............................ ATAGGCATCCACTTAGCTTCCCCTTTGTAGGGT 35509 28 100.0 32 ............................ TATTGCTCAGAGTTAACCTCTGGCGACAAGGC 35449 28 100.0 32 ............................ ACTATCGCGGGCTCAGTTGGTTCATCAGCTCT 35389 27 78.6 0 ....................-..GTTTT | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.9 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GCCCTTGTGGCTGGCACCCCCCTACCCAGCCCAGTTACGGCCTGATAGAAAAACCACCCTGCACAAAGCTGCTGTGTAATAAGGAGCACACCCCATGCAAATGACACTCCGCCTTGCCTGCCTTATTGGCATTGCCCTTGCAGGTGTGCTGCGCTTTGTAGCCCCACATTACCACCTTACGGCAGAAATTGTGGGGGTCGGGTTTTTAATAACCGCTCTGGTAGCCACCGTCATATTAGACGAAACAGCCCCGGCCGGTATTTCAGCCTCTAAAAAATAGGCACTCACCCTGCCCCAAAACAGGCTAACACGCCTTAAAACTGGCTATTCCGCCCAAGCCTAGCTACAGTGCCTAAACAAACCCTTTTTTGACCCTTTTTAAAACACCTCAAAAAGTTCTTTGAAAATCAAAGCCTTAAAAACCGCCCTCAAAAAAGGGGTAAACGCACTAAAACCCCTTAAGCCCTTGTTTTCTTAAGCGTATCCCTTTTTCCCTTCTA # Right flank : TCTCGTGCTAAAGCGCACTCTCCAACTCTGCTTTCAAGCTGGCCATAAGGCTGGCAGCGGGTAGGCTTCGGGCTAGGGGAGCGCCCTGCCCGGCCCATTGGGCGGCAAAGCCGTATTCCCCTTGGTCTTGTGCGGCGGTGTTTAGTGCCTTGGCCATATCGTAAGCTAAGGGGTATGCGGGGCATGCTTGGCCTGCCAACGTTTGAGCAAACGCCGTAAACTTATTAGGCAAAGAACGTGCCAAGCGGCCAGAAAGAGCTGTAACCATTTCTGTTTTAAAGGCACCCGGCCCGGTAAGAGCCGTGCGATAAGCTGCATTAGCGGCAGATTCTGGGCAACCAATAAACGCTGTACCTAACTGGGCAGCCGTTGCCCCCACTTTAAGGGCTGCGGCAATAGCGTAGCCTGTCATTATACCGCCAGCCGCAATAATGGGTATTTGGCACGTTTTGTGCAAAAGCTGCGTTAGCACCATTGTGCTTAGGGCAGTGTCTGGCTGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23461-24449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOMO01000005.1 Acetobacter orientalis strain DmW_045 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23461 28 100.0 32 ............................ AAAGACGCGGCACGAACGGCTTGTTCGTGGGA 23521 28 100.0 32 ............................ ATGGGAAGAAGAAGACGGCCACGGCATCATAG 23581 28 100.0 32 ............................ TGTTTGCCCGTTTCTGGGTCTTCCACTGTCAC 23641 28 100.0 32 ............................ CAAAACATTATGGGCGGTACAATTCACGCAAT 23701 28 100.0 32 ............................ TAAAACTACGGTTCTTACTTCTTGTCTGGATT 23761 28 100.0 32 ............................ TCTATCTGCGCGGAATTACTCCAATAATATGC 23821 28 100.0 32 ............................ TTCCGCGCTGGACAGATCAGCCGGACGGCCAA 23881 28 100.0 32 ............................ ATATTCAAAGATATTGTCTGAAACCTGAACAC 23941 28 100.0 32 ............................ TGCGTTACTGAGCCTTTCCCGGAATAGGCTAT 24001 28 100.0 32 ............................ AAATACATCGGCCCCTGCCTCACCACCACGCA 24061 28 100.0 33 ............................ ACGTCAGGAGCCAGCGCGAAAACCCGAGCCTGA 24122 28 100.0 32 ............................ ATCTTGCCAATCGTGCCTGTGTGCAGCGTGAC 24182 28 100.0 32 ............................ TCCGAGCGATGCCGTAAAGTTTCGCAACGGTG 24242 28 100.0 32 ............................ TAACCCGTAAGGCAAACCCGTTTTGCGATGTG 24302 28 100.0 32 ............................ CGCATGTCATACGTTACCCCGGCCGGAAATAC 24362 28 100.0 32 ............................ TAACAGCGGCATTCCCGCAATCTTCACGACCT 24422 28 82.1 0 ....................T.T.T.TG | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : GGCTTATGGGGCGCTTTCTGTAGGTGAATTGCTTATTAGCGCGCTTGGCCTTGCCGTGGTGGCCCGCTATGTGCCGCTTAATATTGGGGCCTTTATGATGGGCAGCTACTGCGTGTCTAACGGTGTGGCTATGTACCTTGGCAGCATGGTGGCCAATATGGCTGCTGTAAGCGGTGCTGTTGGGGGCGAAACTGTTGCTGCAACGCTGCCTGTTTATGCCAGTTTGTTCCGCTCTCTCTTCTTTTTAGCTGTAGGGTGCACGGTGGTTTTTGTGGTGTGCCTGCCTTTTACACGGCGGTGGGACGCCCAGCACCATGCAGCACTTGGCATTAAAGCCAGTGCAAAGGGGTAAAGTTTACCCCTAAAATACCCCTTTTTTTAGAGCCAAAAATAATCTCTTTAAAATCAGATACTTACAAAACGGCTTGCAAAAAGGGGTAAAAGCGCCAAAATAGGCTGCAAGATGCACAAAACTGCTCTTTTATAACCATATCAGTCTA # Right flank : GTGTTGTTAGGGGCTTTTATTGTCTGTTTAGAAAGGTGTAAGCGGGCGAGTGGTGGAGCTGAGGGGAATCGAACCCCTGACCTCCTCATTGCGAACGAGGCGCTCTCCCAACTGAGCTACAGCCCCGCCAGCTTTATTTTGCGTGTACAGAGCGGGGTAAAGCCCTGTCAAGTTTAGGTGGCATGCGGTAAACCGGTTAAACACACGGCATACTCTTATTGCAAAGGAGCAAGTATTTGCTGTTTAGCCTTTATATGGTGCTAACGCGCCTGCTGGATATTTATTGCTGGATTTTACTGCTATCGTGCATTTTTATTAATTTGTGCATGTTTGGTATTTTAGACAGCCGTAACCAGCTTGTTTGGAAAATTGGTGTGTTTTTTAGCCGTGTGACCGAGCCTGTTTTGGGGCCTATACGGCGTATGCTCCCTAATTTGGGAGGGGTAGACTTTAGCCCCATGATTGTGCTGCTGGGCATACAGTACATTGTGCAGCCTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22042-20993 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOMO01000036.1 Acetobacter orientalis strain DmW_045 contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22041 28 100.0 32 ............................ TGCTATGTGTTGTATGCATGTCTCTATACGCG 21981 28 100.0 32 ............................ ACGGCATCATAGAAGAACGCCGCGCCAATTAT 21921 28 100.0 32 ............................ TCTCAGGAATTGGCGGCTACAGATGACAACGC 21861 28 100.0 32 ............................ TAGAGCGGTATTGTAAAATGCCTTGTGATAAT 21801 28 100.0 32 ............................ TGAACGGTAAATATCGCGTTACAGGTGCCTTT 21741 28 100.0 32 ............................ GACCCGACAGATTGTGCCAGGGACGAAACCAA 21681 28 96.4 32 .........A.................. TGTATGGCCCACTCTTCGGCTTCTTTTCTGGT 21621 28 100.0 32 ............................ TCCTAGGGTGTTTGCAGAGTAGTTTTGGTGTG 21561 28 100.0 33 ............................ CAAAGACGTGCTTCTCATCATCGCCCGCTCTAT 21500 28 100.0 32 ............................ ATAGAGAGTGGACGCTTGAAGGCGCTCCAAAG 21440 28 100.0 32 ............................ AACGCGGGATATTCTGTAAGGAAGAATAGGAA 21380 28 100.0 32 ............................ ATTTCAGAGCCAAAATGCAACCCGTCAATTAA 21320 28 100.0 32 ............................ CTAGAATATTTTGGCGCTGGTGTAGGGTTTGA 21260 28 100.0 32 ............................ ACCCCCGCAGGTAAAGCCTTTCTCGATATGTT 21200 28 100.0 32 ............................ AATATACGGTGCCACAGGCTGCACCGCTTTAA 21140 28 100.0 32 ............................ AGTTGAACCATGCAAGGGACTCGTTGGTAGAT 21080 28 100.0 32 ............................ GTTCAAGATATGATCGCCGCCAAGCGTGAGGT 21020 28 85.7 0 ...........T........T..TA... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 CTTCACTGCCGCACAGGCAGCTCAGAAA # Left flank : TTAGAGCGGTTAGCGGCATCTGGCTGGCTTACCCGAGTGCAAGATTACGTGCAGTGCGGGCCTATTGGCCCCGTACCGCAGGGTTGCCAGCACCGTGTTGTTAAGCGGGTGCAAGCCAAAAGCAGCCCCGCCCGTTTACGCCGCCGGGCCATGCGTAGGCACGGGTTAGACACGCAGGCCGCCCTTGCCACTATACCCGACACCGCGGCAGAACGCCTGCGCCTGCCATTTGTTATTATAAGTAGCGCTAGTACTGGCCAGCACCGTTTTCCACTTTTTATTCGGCATGAGCCAGTGCAGCCTACGCCGCAACCCGGCCCCTTTAGCGCGTATGGTCTAAGCCTTGGCGGGAGTGTACCGTGGTTTTGACCCCTTTTTTGAGAGGGGATATAAAGATCTTTTAAAATCAAAGAGATAGGATTCCCCCTCTAAAAAAGGGATAAAATGGCAAAACCTGCATAACCCCTTGTACTAAAATAGGTTATGCAGGTTAACGTCTA # Right flank : TACGACCACTAAGAACCTAGTCTAGCCTTGTTCGCGTTTGACCTGTTTCCATAAGCTGTCGAGCTCTTCTACTGGGCGGTCTTGCATAGATAGGCCCTGTGTGGCCAGTTTGGCTTCTACGGCTTCAAAGCGGCGGGTAAATTTGTCGCAGGCTTGGCGTAGGCAGGCTTCGGGGTCTAGCTCTAGGCGGCGGGCTAGGCTGGCAATAGAAAAAAGCACATCGCCGAGTTCATCTTGCATGCGGGCTTTGTTGCCGCTGGCCATTTCAACGGCAAACTCTTCCATTTCTTCATGCACTTTGGCCACTACGCCTGCAATTTCTGGCCAGTCAAAACCTACGCGTGCGGCACGGCCTGCAATTTTGGAGGCCCGGAGCAAAGCAGGCAGCATAGGCGCAACGCCTGCCAACGCCCCAGAAGGTTTACCACTTTTGGCAAGTGTTTTACGTTCTTGCTCCTTTAATGCTTCCCACTGGCCGGGTAGGGCGGCGGTGTCGGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //