Array 1 7025-3160 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUDR01000020.1 Pannonibacter carbonis strain Q4.6 Scaffold20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 7024 31 100.0 33 ............................... ATCCAGCGGGGCTGGAACTACTTGCGGCTCCTC 6960 31 100.0 33 ............................... GATCAGCGCCCTCCGCCTCTGGTATTCTTGATC 6896 31 100.0 35 ............................... ATGCGGTCAAGGCTGGCAATCCTGCTTGGGCAGAC 6830 31 100.0 34 ............................... AACTTACCCACATAGTGCGGCAAATCAGATGACT 6765 31 100.0 35 ............................... AGCACAAAGTCAATATGCAGGTATGTGCTGAACAT 6699 31 100.0 33 ............................... CTGACATGAACGCGCCTGTTGCCATGGCAGCGC 6635 31 100.0 34 ............................... ATCGAGTGCACGTCATCTGCCTCCGATGATAGTT 6570 31 100.0 34 ............................... CGCGAACGCATGGCCGGCTTCGTCGCTGTCGATG 6505 31 100.0 34 ............................... TTTTTCCCGAGCGTCGTTCTTCAGGCGGCGAATG 6440 31 100.0 33 ............................... GCATGATGGAAAACAGTTACCTGCAGCCGCTTT 6376 31 100.0 33 ............................... CTTGAACCCGCCCGCGCCCGTCGACGCCGTGAA 6312 31 100.0 34 ............................... CTTGTTCGGGACATTCACCGTTCCGCCTGTGCCC 6247 31 100.0 33 ............................... ATGTCCCCGGAAGCCAGCAGGTAGGCCCGGCTC 6183 31 100.0 34 ............................... CATCACTCACCTGCCTTTCCGAGATCGGGAACAA 6118 31 100.0 34 ............................... CTCTTCCGGATCGACCAGCCGCTCTGCTGTCAGC 6053 31 100.0 34 ............................... GATGGCTGTGATCCCGGAACTTAACGTGAAGGTT 5988 31 100.0 33 ............................... TTCGACATCGTGACCTATACCGGGGACGGTGTA 5924 31 100.0 35 ............................... TACGCAGTCCCTTGCGGGGTGTTGCGCTCCCTGTC 5858 31 100.0 34 ............................... ACAGACTACAGGGTGTGAAACCTGTTGAAAGAGC 5793 31 100.0 34 ............................... CCTGACGAGAGCGGGGCTCCGCTGTTCCGAATTG 5728 31 100.0 34 ............................... CCGGATATGGACTGCGCCAACATCGCAGACGGCA 5663 31 100.0 35 ............................... ACTCCGGTGACGGACTACAGCTCCATGTCCCCGAT 5597 31 100.0 34 ............................... ACTTGCCGGCGCAGGCCGTGGAACTGATCGAACA 5532 31 100.0 34 ............................... CACGAAGGCCATCCGGTCCTCCTCGAAGCCGCTG 5467 31 100.0 35 ............................... TGAAGCAGCTCGCAACGCCGGAACCGGCACAGACC 5401 31 100.0 33 ............................... TGGATAACACCGTTAACCCAGACGTCGACGTTG 5337 31 100.0 35 ............................... AAACAGGACGTCCGGCGTGGCCGCGAGCACAAGCC 5271 31 100.0 35 ............................... CGGCATTTGCGCCAGCGTCGTGGCGTCCAGCAGCC 5205 31 100.0 34 ............................... GGCGTCATCGACGCGGCGAAGCGCGTGCCGACCC 5140 31 100.0 34 ............................... ACAATTTCCAGGAAGACGAAGACGCCCTCGACGG 5075 31 100.0 35 ............................... AACCGCCTTGGTCAGGTCTGTGACGGTCGTACCGT 5009 31 100.0 33 ............................... ACGACGACAGGTCAGGCCAGCCCTGCAATCCCT 4945 31 100.0 33 ............................... ATCGATTACCTGGGGCTCATGTCGGCTTCCGAG 4881 31 100.0 33 ............................... TATCCGAGCGCATTGCTGCATTCGAGACATCGC 4817 31 100.0 34 ............................... ATGCAGGTGGCGGCAACGAGTGGATGGCTGCGGC 4752 31 100.0 33 ............................... CTGAACGGGATGACCGTTGGCGACTTCAAGGCC 4688 31 100.0 34 ............................... AAGATGGGGTTCGACATCGAGCCGGAAAAGCCGG 4623 31 100.0 34 ............................... TGGTGCGTACCGATGGCATAGCGCGGCGAGCCCT 4558 31 100.0 34 ............................... GGCACCAAGGGGAACGCCAAGCTACCGCCGCCAT 4493 31 100.0 34 ............................... TCGACCTGCACCAATTGGCTCGAAGAGCGGCGGC 4428 31 100.0 35 ............................... TCAGCCCCGGTCGCCAGAACTGTAGCGGTCGCGAC 4362 31 100.0 34 ............................... CTCCCCGTCCTCGCCCCATCCGTCCGCCGAGAGG 4297 31 100.0 35 ............................... AAATAAAGCGAATAGACAAACGGAACATCATCCAC 4231 31 100.0 34 ............................... CTCCTGGAAGACAGCCCTGATCGCTCCGACACTG 4166 31 100.0 34 ............................... TCCTTTTTCCCACCTCCAAAAAGTCCACCACTCA 4101 31 100.0 34 ............................... TCGTTGAACTCGTTGCGGGTCGCGCTGACCAGCT 4036 31 100.0 34 ............................... CTCGAGCTGGGCAAGCTCTACTCCTGGGTGGCCG 3971 31 100.0 34 ............................... GTTGGCATAGTCATCCGGGCCGAGGGTCATGAAC 3906 31 100.0 34 ............................... CCATTTTGCAGGCGTCATCAATCACGTCACGCAT 3841 31 100.0 34 ............................... CCATCGGCCGGTCAATGGCCGCCGCCTCCGACGT 3776 31 100.0 33 ............................... CCTTTCCCCTCCTCGTCATAGAACCGGCGGAAC 3712 31 100.0 34 ............................... TGCGTTGCTGCATCCGCACCCTGGAGCGCCTGGA 3647 31 100.0 34 ............................... CCGGTCAACCGGGTGACGATCGGCACCGACCTGT 3582 31 100.0 34 ............................... CCGGTGATCACGGAAAAGGAAGTGCCGTGGGGCG 3517 31 100.0 34 ............................... AGCAACCTGCACATGGATGCAACGCGCAAGAGCG 3452 31 100.0 34 ............................... CGCCGTGCGCCGGTTCGAAGCCCGCACCGGAACC 3387 31 100.0 34 ............................... AACGCCACGCGTGTAGATCACCCATGCAGGGCGC 3322 31 100.0 36 ............................... ACACCCTGCTCGCTCCGCGACAACGTGCGCCAGCAG 3255 31 100.0 34 ............................... TCCGCTGTTGTGTGCCAGCCGCTGAGCTTGGTGA 3190 31 96.8 0 ..............A................ | ========== ====== ====== ====== =============================== ==================================== ================== 60 31 99.9 34 GTCGCTCCCTCACGGGAGCGCGGATCGAAAC # Left flank : CTTCGGCCAGCGTGTGCAGTTTTCGGTCTTTGAAATCGAGGTCGATCCCGCCCAGTGGACACAGCTGAAGGCCCGCCTGGAAGGGATCATCGCGCTGGAAACCGACAGCCTGCGCTATTACTATCTGGGCTCGAACTGGCAACGCCGGGTCGAGCATGTGGGCGCCAAGCCAGCGGTCGATCTCAATGGACCGCTGATCGTCTAGGACAGGTCCGATAAAAGCAGGTCGGCCTTGCCTCAAGTGTTGCACACCGGCAAGGCGCGCAGGGTCTGCGGCCCCATTGCCGCACAGGCCGTCTCAGTCGTAACTGGGGCGCATTCGCGCGAACCTGAAGCGTGCCTCAAAACCCGCCCCGGTTCGCGCTCACGCCAGCTCTTTGAAAACATGGAAACATTTCTGGCCAGTGCGCCCATTCAGCCGGCAACGCCCCAGATCTGCATGACGCCTCGCGCTGAAGAGCCGATTTTCATTTGCCCACCAAGCTGTTACGACCATACCC # Right flank : ACCCGGTTTCCGTCGCGGATAGACACTGACCTGCCACTGAAGTTTCATCCAGCAGCGTTTAGAGCCCTGGCAGGGTTTACGCCTTGCGGCGCGATGTGTGCAACATGCGATCGGCGGAGCTGGTCCGGGTTGCGCAGCCGATCACATGCTGCGGAAAGGGAGTCGGCATAGGCCGCCGGAGTTTGGTAGGCGAGCGCAGAGTGCGGGCGCCGATTGTTATAGTCGTCGACCCAAGCCGTGACCTTCTCGCGGGCGTGGTCAAGGCCCAGAAACAGCGTCTCGTTTAGCAGCTCATCGCGCATTCGCCCGTTGAAGCTCTCGCAGAAGCCGTTCTGCATTGGCTTGCCCGGCGCAATGAAATGCCAGGCTATCCTGGCTTCCTGTGCCCATGTCAGCACGGCGTTCGAGGTGAACTCCGTACCGTTGTCGGAAACGATGAGGCCTGACTTGCCACAAAGCCGATAAATGCGATTGACGCCCGAAGGCTCGCCGCCCTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGCGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGGGCGCGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 415606-417820 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUDR01000003.1 Pannonibacter carbonis strain Q4.6 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 415606 36 91.7 30 A...CA.............................. ACGCCGGTCACGAGCGAGATCGCATAGCGC 415672 36 97.2 30 ..............G..................... CATGGGGCTGGCGGTGTCGCGGTGGTCCTG 415738 36 100.0 30 .................................... ATCCGCAGACGGCACAGGTCATCAACGGTC 415804 36 100.0 30 .................................... GGCGACCAGCGCGGCGAGCACCCTGGCGAC 415870 36 100.0 30 .................................... CGACCGGCCAATTGACCGTGTCGTGATCGA 415936 36 100.0 30 .................................... TGGCGCTGTTCCGGCTCGCTGCGCTGCAGG 416002 36 100.0 30 .................................... GTGCCGCCCGCATTGGCGATGACGACCGCC 416068 36 100.0 30 .................................... TCGCGTCCACCGCCTCCATCGTGCCGGTAA 416134 36 100.0 30 .................................... CAGCACCGGCTTGACGAAGCGCCTTGCGAC 416200 36 100.0 30 .................................... TCACGCCGGACGCCGTAGAGCGCCAGCCGC 416266 36 100.0 30 .................................... CTACGGATGAGGATGGGGAGACTGGTATGT 416332 36 100.0 30 .................................... CAGAACCCGGAATATGCGCCGATGCTTAAG 416398 36 100.0 30 .................................... GCGTGATGTCCGCGCTCGTCAGCATCTCCG 416464 36 100.0 30 .................................... TGATCTGGATTGCCATCACTCACCTGCCTT 416530 36 100.0 30 .................................... CGTTCAATGCAGGCTGTCGCGTGGCGAGAC 416596 36 100.0 30 .................................... GGATCGGTGGACTCCGGCATCAGCCAGTAT 416662 36 100.0 30 .................................... ACTTGATCACGCTTGCCGTGGCGCGGAAGT 416728 36 100.0 30 .................................... TGTCGAGCCTGCTGGACGTGCTGCACAAGG 416794 36 100.0 30 .................................... TGATCCGTCTGGCCACGCGCCTGGCGAATG 416860 36 100.0 30 .................................... AAAGTCTCGCGGCGCTGGTCTTTCAGCTCG 416926 36 100.0 30 .................................... CCTGGCCTGCATCCAACGCGCGCGCCCCAT 416992 36 100.0 30 .................................... TCCCCCAGCTTGTTCACGACCACCGTGCGC 417058 36 100.0 30 .................................... ATTTGGGTCCTGGCCGGCTACTGACCGCAG 417124 36 100.0 30 .................................... GCAACCGTCCAGCCCATGCCCGTGGCATCG 417190 36 100.0 30 .................................... ATTTCGTCTTGTCGGCCACCTCGCCGAGCA 417256 36 100.0 30 .................................... CCGCGAAGCGGGCTGTGGCTGAAGATCGCA 417322 36 100.0 30 .................................... CTGCTGCTGATCTTGCAGCGCTCGGCGTCA 417388 36 100.0 30 .................................... GGTACTCGAGAGCACCCCATTCGGCGCGCT 417454 36 100.0 30 .................................... AAGCCCCCGCGCGTGCTGCCGCTCGAGGAT 417520 36 100.0 31 .................................... TTCGGAGACATGGACCCCCAGCAGCTGGGCG 417587 36 100.0 30 .................................... GTCAACGCCGGACGACTGGAAAGACGGCGC 417653 36 100.0 30 .................................... GCTGTCACCGATCGGCAAACGCGAGGCGGT 417719 36 100.0 30 .................................... GAGGAGCATTCGGCGCCGGCCAAAGCGACC 417785 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.7 30 GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Left flank : AGGGTGAGAAAATGATGGCAAAGGCGACCGGCGTACCCTCGGGTGCGCTGTGGCCGGCCCATTATGTCTTACGCTACAGGAAAGCTGCAAAAAATATCGCGCAATGTCGGTCCTGGTGTAACGCGCAGGAACGGATGGCCTTGGGGATTTGCCGGGAATATCCGGGAGTTCGCGGGAAGTGGCGGTTTTCTGCGGGTTCAAACGGCCTTCGATGCGGCTTGTGAAGGCCGGGCGCGCGGGATCGGATGGCACTCAAGGTGCTGCGGTGGGCCAGCTGGACGAAAAGGACATGGAAAGCAGCCGGCATGCGCATTCGGCGTGGGAACAGGGAATGGGGGCTAACTCCCCCGTTCCCGTCGGCGGTTCAGGCGCGCATTTTCAAGCTGCGCTGATCCCTTGGCCGTAAATTGCAGCGTTGTGGTGGGAACCCTCGTCGCCATTCCATATGACACATTATGCGAATCCCGACACATTGGCCCTACATTTGTGGGCCGTCTCAG # Right flank : TCACTCCGGCGCAATGCGTTGTTTTGTCGATACAAAAGGCTTCTAGGACGAAAAGAAAATCATAGGAGAACAAGCTGTTCACTCGCCTTGCGCTCGGTTTTGGTTGATTCGCCAACAAGCAGTTGCATTCGTGCATATTGCTTGTCCGTGATCTGCAGCGTACGCACGCTGCCCTTCGGAGGCAGGTTGGTTTTGATGCGCTTGAGGTGCTTTTCCACACCTTCCTCCGCACGGCAAATTCGCGCGTACACCGAGAACTGAATCATTAGGAATCCATCCCGTTTCAGGAAGTTGCGAAAGCGGGTCGCATTGCCACGTTCCTTTTTTGTCGTAACCGGCAGATCGAAAAACACCATCAGCCACATGAACCGGATGTCCTTGTTCATTGGCGCGGGCTGACCGGGAGTTTGGGCAGGTCCAGCAAGTCTGCGGAGCCATGTTCAAGCGCCTGAAGCAGGCTTTGCGCGACGATCTCCGTGGCATTTAGCAAGCTCATTTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTACCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //