Array 1 82632-84879 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSPS01000002.1 Bifidobacterium pseudocatenulatum strain TM05-11 TM05-11.Scaf2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 82632 33 100.0 35 ................................. AAAATTCGTACAGACGTTGCAAGCGGATACGGATT 82700 33 100.0 34 ................................. ATATTGATTATCGGTAGCGTTACTAGCGTAGTCT 82767 33 100.0 32 ................................. ATGCTTAACGCGCCCGTCATCGCGTCGCGCGC 82832 33 100.0 34 ................................. ATAATAATATTTCGCCATCAATACTCACAATCAT 82899 33 100.0 34 ................................. TAACATAAGAGTTTGCATATCGAACATAAGATTA 82966 33 100.0 34 ................................. AATATCTTTCGCAATGAAATGCGAATGGCGTCCA 83033 33 100.0 34 ................................. GTGGACTGACGATGAATTGCGTCAGGCGTTCGTG 83100 33 100.0 36 ................................. CAGTGGTTTGATGGCCTGCGGCAACGTCAATTGCTG 83169 33 100.0 34 ................................. AATCCTATGAGATTGCTCACGTGCCGTCGAACGA 83236 33 100.0 36 ................................. AGGAATGGTGACCGGGTAGTAATGATCAAAAGTAAG 83305 33 100.0 33 ................................. AAAACGAGTTTGATCGCGAAAACGATAGCCCAG 83371 33 100.0 34 ................................. CTCGAACGGCCCACCCGCGCGGAACGCCGTATGA 83438 33 100.0 32 ................................. GAAACTGGTGGATGGCGATGCGGCCGCGGCCT 83503 33 100.0 33 ................................. TGTCGGTTGGTGTGGTACTGGTCAAACCATCAA 83569 33 100.0 34 ................................. GCGTAGCTCTTCGATGCGCCGCGCGGTGGCCTTC 83636 33 97.0 37 .........A....................... AGACTGTGCACCGGCATGCGTCCGGGCGAAATACTCG 83706 33 100.0 35 ................................. TGCACCAGCTCGAAGGACGGCAAGGAACTGACCAA 83774 33 100.0 36 ................................. GTCGACAAGGTCGAACGCGTCGCATAGCCATAGGGC 83843 33 100.0 33 ................................. TTATATGTAAGGAGATTCGATGGCACTTGATAA 83909 33 100.0 33 ................................. CTATTACGGCAGCTGATAATACGCAGGGCGGTG 83975 33 100.0 35 ................................. CACAGCATGCAATGGGCGCGCACGTCGGACGGAAT 84043 33 100.0 33 ................................. TGGTTTTGGCGAAATGCTGCGAGAGCGGCGAAT 84109 33 100.0 40 ................................. AACGTCCAGATCAAGGACGGCGTCGCGTACGTGTACGCGA 84182 33 100.0 33 ................................. ACTAGCCTATCCTTTCAAACATTGAGCAGCCAA 84248 33 100.0 33 ................................. GAATTGGTCTGCAGGCGTAGGAGCTGTTCCGCG 84314 33 100.0 33 ................................. CATAACCGGCAATGGCGTGCAAAAAAGAGGGGC 84380 33 100.0 34 ................................. TTGACGTTCTGCGCGCCCTTCTTCACCGAAGCGG 84447 33 100.0 34 ................................. TCATCCATTTCAAAAGTCGATGACAAGATTTCCT 84514 33 100.0 33 ................................. ATTTCGAGATTGTTGGACGCCCATACGCGTTTC 84580 33 100.0 35 ................................. ACCGTGGACGAAGCCAAACGCATCCTGAAGGCCGC 84648 33 100.0 33 ................................. CATAAGGAGCGTGACGAGAAGGCCACGGAGGCG 84714 33 100.0 33 ................................. CTTGAGTTCGCGCACGCTGCAGGTGTTGGTGCC 84780 33 100.0 34 ................................. TTTTGGACCGTTTGGTCAAGCGAAGCGTGCCCGG 84847 33 81.8 0 .......T..TT.C..A...C............ | ========== ====== ====== ====== ================================= ======================================== ================== 34 33 99.4 34 GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Left flank : GGCGTCTACGTTTAGTGGCAAAAAGCTGCATGAAATATGGGCAACGCGTGCAAAATAGCGTTTTCGAATGTAGCGTTACTTCTGCGGAGTATCTCACGCTTAAGCATGATCTGTTGAGCATCATCGATGTCAAAACGGATAGTTTGAGATATTACAATTTGGGAACGAACTATTCACGGCGCATTGAACACTTAGGCGTTCAACGTCATGTTCCCGTTGATGGAGTCATGATGGTATGACTTCTAAACGACATGCAGTGCGACCCTGAAGCAGTCATGAGTTACAGGTAGGTTCGCACCTTTTTTGTGCGGAGGAAATTAAAACTGGAACCCTGATGTAATTTCGGATTGTTGTTTGATAATCGAAAAGTGTAGTCAGATAGAGTTTGATCTTTGCATTTGGACGTATTTGGGGCGGTGGGGAACTGATGTAATATGTGTATCAGCCGAGATGAGGTTTTGCTTGAATCATTATTTGGTCAAAAATGTCTCATTTCTGCG # Right flank : TCGGTGTCTGCAGCGTTCCGGCCACCGCGTGGATGTCGCTCTCCCTGTTTATGTCCAGTGTTCTCCGCACATGCGGGGATGATTCCGCATGTGCGGGACTGTTAGTATCAATGACAATCCGAGGGGGTGAAAACGAGTTTATGGGCACGCGTGCGGAGTCTCAGATGCGCAGAACTCCTCACGCAGCGCATATCACAATCCCAGCCAGGCGCGTAGGTCACGAATTTCCTGATCGCAGATGCCGTGGCCCATTCCCGGATATTCGAAATACGTGAGATTGCCGGTTTGCGCAAGTTTGTTGTGCGCGCACTGTTGGTCGGCTAAAGGAATTGTGCGGTCTTCGCTGCCGTAGCAGAGTGCGAATCGCGTGCGTCCGGTCGCGGGCAAAGGCTCAGCGGTTTCGCCTTTGAATGATGGGCTCATCAGAATCGCCCTGTCGAACGCATCGGGATGTTCCGCAACCATGCGATACGACAGGTATCCGCCCTGCGAAAACCCGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCAAGGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //