Array 1 162790-161601 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAS01000001.1 Salmonella enterica subsp. enterica serovar Baildon strain 2010K-1384 NODE_1_length_606198_cov_4.87145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 162789 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 162728 29 100.0 32 ............................. ACCCCGGCAAATGCGCAATGGCTGGACCTGGA 162667 29 100.0 32 ............................. CCTCGCTCCAGAAATCATTTATGACGGCCAGC 162606 29 100.0 32 ............................. CATCACCGCTGAACATCTTGAAGAGTTGTTTG 162545 29 100.0 32 ............................. CCCGCTCGGGTAGCCGGTGTGCCTATGCCGCC 162484 29 100.0 32 ............................. CAGCTCGACGACACTGAACAGAGCGGAATCCC 162423 29 100.0 32 ............................. AAATCGCGTTTGTGCTGGGTATGCTCGGCTAT 162362 29 100.0 32 ............................. GTGTTGAATACAGCCGAACCGATCACGCTGAA 162301 29 100.0 32 ............................. CGCCATCGTCTGGTGCTCTTTGCGGGGATAAG 162240 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 162179 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 162118 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 162057 29 100.0 32 ............................. GCACAATTACAGTTTGACGCGGTGCTGTCATT 161996 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 161935 29 100.0 32 ............................. CGAATTTAAGAGTCGCATCTGTATTTAATGGT 161874 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161813 29 96.6 32 ..........T.................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 161752 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 161691 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161630 29 93.1 0 A...........T................ | A [161603] ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180063-179058 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAS01000001.1 Salmonella enterica subsp. enterica serovar Baildon strain 2010K-1384 NODE_1_length_606198_cov_4.87145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180062 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 180001 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 179940 29 100.0 32 ............................. CGCTGCGTTCCCGGAAATGGATGAATTGAAAC 179879 29 100.0 32 ............................. CATGTTGTCGCGGTAGTATTTAGTCGAAAGCA 179818 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 179757 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 179696 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 179635 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 179574 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 179513 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 179452 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179391 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179330 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179269 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179208 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179146 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 179085 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //