Array 1 88348-90145 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHO01000009.1 Salmonella enterica strain BCW_5882 NODE_9_length_214422_cov_4.76948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88348 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88409 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88470 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88531 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88592 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88653 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 88714 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88775 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88836 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88897 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88958 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 89019 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89080 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89141 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89202 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 89263 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 89324 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89385 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89446 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89507 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 89568 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89630 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89691 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89752 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89813 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89874 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89935 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 89996 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90057 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90118 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106278-107998 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYHO01000009.1 Salmonella enterica strain BCW_5882 NODE_9_length_214422_cov_4.76948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106278 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106339 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 106400 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 106461 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 106522 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 106583 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106645 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 106706 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 106767 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106828 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106889 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106950 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107011 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107072 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107133 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107194 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107255 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107317 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107420 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107481 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107542 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107603 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107664 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107725 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107786 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107847 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107908 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107969 29 96.6 0 A............................ | A [107995] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //