Array 1 204169-206331 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJK01000006.1 Cronobacter turicensis strain cro2991W contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 204169 29 100.0 32 ............................. AGACAATCTGATACTGCGTGACCATCCCTACA 204230 29 100.0 32 ............................. TTTGTACAGACATTATTCCGCTCCTTTCCAGG 204291 29 100.0 32 ............................. CATTGCCACCTGCTCGGTTGTTGTTACGCGCA 204352 29 100.0 32 ............................. GTTATTGCGTGCGGGGCTGAACAGAGCGTCGC 204413 29 100.0 32 ............................. GTAACCAAACTGCAGGATCAGGCCGTTAAGAC 204474 29 100.0 32 ............................. TTACCGCAATCATTCAACGTCAATACAGGGTG 204535 29 100.0 32 ............................. TGAATATCTCGCTGGATGGTCGCAGCAAAGCG 204596 29 100.0 32 ............................. GCCCATTATTGCAGCGCGCACTACGTCGGAGC 204657 29 100.0 32 ............................. TCGATGATCTGCATATCGACAGGCGAGACGGT 204718 29 100.0 32 ............................. TGAAATGATCGTGCGCGTAGTCATGTGCGCCC 204779 29 100.0 32 ............................. TATTCACGCGAACCGTTCAGCCAGCAGTGGAC 204840 29 100.0 32 ............................. ACCGTGCTGCGCCCTGCCCCTAACTGACGAGC 204901 29 100.0 32 ............................. AGAACGGTTTTTATGAGAACGGCAAGCCGTCC 204962 29 100.0 32 ............................. ACACGCAGCATCCGCTTTATGACGACCGGATC 205023 29 100.0 32 ............................. CGGGGTGAGTTTCCCAGGCCGCACAAAACCCC 205084 29 100.0 32 ............................. TTCCCGGCATGCGCGCCGTGCAATCTGTTTAA 205145 29 100.0 31 ............................. ATTACCAAATTGGTAATTTTTCTCTCAATAT 205205 29 100.0 32 ............................. AGGCGGACGAGGGTTGTGACCATACTGACGTT 205266 29 100.0 32 ............................. TCGTTAGTTTTATCGATGATCAGATGATGGCT 205327 29 100.0 32 ............................. GATGAGGTAAGAAGTAGCTGGGCAGAACCTCT 205388 29 100.0 32 ............................. ATAGCCGATAAGGATGCAGCTCGCGATTATGA 205449 29 100.0 32 ............................. CCTGTTTCTGACGAACAGCGGGCTTTCTGGAG 205510 29 100.0 32 ............................. CTGATTGCATCAGATAACCGACTCCATGAATC 205571 29 96.6 32 ................T............ CCCTCTTTCCACTGAGTAGCGCCCTTTTAAAA 205632 29 100.0 32 ............................. CAGTTTAGTAATAAAGGGGGCCTGGTCATTGC 205693 29 100.0 32 ............................. GCAGCGGGACTCTAACGGTTCATCTAAACCTT 205754 29 100.0 32 ............................. CTGGCGCAGAATCGCAAAAATGCTGCTTCGGA 205815 29 100.0 32 ............................. TGGAACGAGACTCAGATACCAGTCAGCAAAAT 205876 29 100.0 32 ............................. TACAGTGCCGTGCCGTGTTGCAGGCTGGTTTG 205937 29 100.0 32 ............................. TAAATAACATCCGCGCTCTGCACCATACTGAG 205998 29 96.6 32 ...............A............. ATGACCCTCAGCGAGCTTGCGTTGCGAGTAGA 206059 29 96.6 32 .........A................... GGTTGCCGCCGGTTGGGTGTGAGTGTGAGGCA 206120 29 100.0 32 ............................. TTCATACCAGACTCAGTGTTTTGCGGTCAGAC 206181 29 100.0 32 ............................. AGTGGGAAAAAAACGCGCAGGCACAGCAAGAG 206242 29 100.0 32 ............................. GCGTCCTGTATCTCGCTAAACGTGACGGTCGG 206303 29 93.1 0 ..........................A.A | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCCAATGGATGATGGCGAACAACATCGCGTTTATCGTCGTTAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACCGTCACAAGTCAGGTGAAACAGCTTAACGGTAAAAGCGGGATACTAAGCCAGGTCATCACGCTGGAGCCCGAAGGCGAGGTAGTCGCCGATGCGCTCATCACCTTTGTGTGTATCGATCTGAAAACCCAGAAAGCGCTGCCGATTGACGGCGAGCTGCGTGAAAAACTGGAAAAACTCACAGGGTAAATTCTGCAATAGCGGTGCGTGTGCCCGCCATCGTGGATTTATCGCCGCTGAAGATAAACAATCCGGTAGATGTTAACGGCCCACAAGCGTTGCTGAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATCCTAAGCAGTACAAAGCGTTACTTTTAGT # Right flank : AAACTTTGTTGGCTGTACGAACAGCGCGACGCTGTCAGCCCCATATCCCGTCACATTCTTCAGCACCGTTTATACTTCAAAGCCATTGTTAAATTCTCAAGACTGCGCAACAAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGTTGCACGCGCATCTCATCTGCCACTGCCTGCTTATTGAAACTGAACATCACGGGCTGGTGCTGGTGGATACCGGTTTTGGTTGTGATGATATGCGCCATCCTGGCCGCCGTTTGCCGCTCTTTTTCCGGGCGCTGAACAATATTCAGTACCGGGAATCATTAACGGCGCTACATCATATTCAGGCGCTGGGCTTTAAGGCGGAAGATGTCCGCCACATTGTGCTGACGCATCTGGATTTCGACCACGCGGGCGGCATCAGCGATTTTCCGCACGCGCAGGTGCATTTGATGCAACGGGAAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232827-233781 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJK01000006.1 Cronobacter turicensis strain cro2991W contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 232827 29 96.6 32 ............T................ CCAGCTCGCGGATAGTCACGCTCAGGCTGGAT 232888 29 96.6 32 ............T................ GTGACGAATTGCAGGGTAAGCGCAAAGAGCCG 232949 29 93.1 42 ..T.........T................ AGTCATGTACGACATTGATGCGGCGCAGGGAGCGCAACTGGA A [232953] 233021 29 96.6 32 ............T................ CGCCTCAACTGAAACTGGTTGAGACAGACGAA 233082 29 96.6 32 ............T................ CATCAGCTACCAGTTGAGCATTAGCAGCGTCA 233143 29 96.6 32 ............T................ CCATCAATAGTTATTGTTTCGCCGTCAGGCAG 233204 29 100.0 32 ............................. GATTGCGCCAGCGCGGTGATTAAGGCGCTCAG 233265 29 100.0 32 ............................. ATGGCCCGCATTTCCAGCTGCCGCGCAGAGCC 233326 29 100.0 32 ............................. CTAACAGCGCCTTATTTTGCCATTCGCTCAAA 233387 29 100.0 32 ............................. GTCGTGCGATTTGAGAACGCCCCACAGGGAAT 233448 29 100.0 32 ............................. GCGAAAAATAACGAACACGATTACCGCGCTAT 233509 29 100.0 32 ............................. GGGTCGACGTTCGGGCAGACCGCGCAAAACAA 233570 29 100.0 32 ............................. AACGGGAGCAGAGTGTCGTCGCCGTGGATATG 233631 29 96.6 32 .............A............... ATTCTTGAGCGGCGGTGTTGACGTTCTGTGTG 233692 29 96.6 32 ............T................ AACCCGAAATCGTTGGGCTTCATGCCGATTCA 233753 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ========================================== ================== 16 29 97.9 33 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGGCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCAGACATGCTGCCGCCCGCGATACCACAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTGGTCGTGACGGAAAGCGTCCCGCCCAGGCTTCGCGGGCGGCTTGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGGGACGTGTCGCGCCGGGTGCGTGAGATGATCTGGCACCAGATTGCTGAACTGGCGGAAGAGGGCAATGTAGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGACGGATTCCGGTGGATTTAGACGGCCTGCGGCTTGTTTCTTTTTTACCGTTGGAAAATCAGTAGGTTAATGGTTCTTTAATAATATGAGATTGTAAACCAAACGTTGGTAGGATGTTGGGTGCCAAAAAAGTGTAATAAATACAGTGGTGTAGTTTTAGA # Right flank : CATCCGTTGAGGCTTCTTTCTGCGCCACCAGCGTGTTCCCTGCTGCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCTTCATGCCCGGCGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCCTCATGCCCGGTGGGTGCGCTTCGCTTACCCACCCTACAGGCGTAGATCTTCATGTCCGGTTAGTGCGCTTCGCATACCCACCCTACAGGCGTAGCTGCCCATGTCCGGTTAGTGCGCTTCGCTTACC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //