Array 1 6607-7383 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLC01000025.1 Enterococcus silesiacus strain DSM 22801 Scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 6607 33 100.0 33 ................................. TGTTTGTGTTAATGATGAAGACTATGTATCTAA 6673 33 100.0 37 ................................. CATTTCAGCATCTGTGGCATATCTAGCAGATCCATAT 6743 33 100.0 35 ................................. TTATCACACGAGCAATGCAAACTTTAGGCGTTTTG 6811 33 100.0 36 ................................. TTTTTCGTGATGATGCAGATGATAGCGGCCGCAAAC 6880 33 100.0 34 ................................. ATTTCACTACCTCCTAATATCCGCTATATAACAA 6947 33 100.0 35 ................................. AAATCTAAGAACGCCTTACATACTGGTAAGAAAGC 7015 33 100.0 34 ................................. CAACCCATCAATGGGTTATCATTTAAACGAGCGG 7082 33 100.0 35 ................................. AAGCTGTTAGTAATCCATATGTTTTGAGTTTGATT 7150 33 100.0 35 ................................. ATTGCGAACAGCCGGAATCTCAATTTGTTTGACTG 7218 33 100.0 33 ................................. AAGAAAGTTATCCCTTTTACTGCACTCAAAATG 7284 33 100.0 34 ................................. TCGCTGCGTTTCCCAAGCAGTAACTAGAATATTA 7351 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 12 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : ATGACCAATGCTCAGGCAGGCGAAAAGAATATGACAATCAGTGCGATACATGCTGGGAAAATATTTGTTGATATTTTGGGTAATAATGATACAAAAGTCACATTGGATGAAACTGGTGGTGGCACATTTCCAGTGAATGGCGGAGAAGTTTCTGTTTATGTGAATGAAGAGATTGTAGAAAAATTGAGTAGAAGAATTGACGGTTTGACGATGTAGGAAGAGCAGTGAAAGACAGTGCTCGTTACTTTTACTGGATGATATGTCGATTTGAGCGTGACTTCTATTGAAGGAATAACTATACTAAGAGTAGTAAGTAAACATTTAGAGTATATGTAAAACAGGTGCGAACCCCAAGTGCACATGAAATCACTAGGGGACCCGCACCAGAATTTTGGTGAAAATAGGTATTAAACAGGTCTTTTTCTCATTGAATTCACATTTTTGGATAGATGCAATGCAGAGAAATAGTAGATATGTAAATTGTTTATTACTTTTTCACA # Right flank : TCTTCATATTCCCTTTATTTTTTTGTAAATCAAATCGTCTCACTCGTTACCGAGTGAGTTTTTTATTTCCCCTGAAATCCATAAAAACAATAAGTAAAGTTGATTTGTCACTATAATTGCCATCACCCAAAAAGAAAATATTGTTCCAAGAATTCCATCATTATTAAAGAATTTTTGTCCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTGCATACTGAAGGGCCTTTATTAGTTATGGCGGGTGCAGGCAGTGGAAAAACTAGAGTTCTAACTCACCGTATTGCCTATTTAATTGAAGAAAAAGATGTGAATCCATGGAATATTTTAGCAATCACTTTTACGAATAAAGCTGCAAAAGAGATGAGAGAGCGGGTTGGGAAATTATTAGAAGTTGGCGGAAATGATGTGTGGGTTTCAACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34681-36729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLC01000027.1 Enterococcus silesiacus strain DSM 22801 Scaffold27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 34681 33 100.0 34 ................................. ATTTTGAGTGCTGTTAGGTTGGATGGTTTTTTAG 34748 33 100.0 35 ................................. TTTGTTAGATAAATCATAATTCATCGGTGCAGTTA 34816 33 100.0 34 ................................. AAGTCAATGCCTTGTCTCAAAATGTTCTTGAGCT 34883 33 100.0 35 ................................. TTATCCACTTCCACACTGTCATTAATCGCTATATC 34951 33 100.0 36 ................................. GCTTTTGCTGATTCCTTTTGATTTAGCCAACCCATC 35020 33 100.0 33 ................................. TCATATAAATCTTTATATTCAATCGTATTTTCT 35086 33 100.0 35 ................................. ATCATAGGAAGGATTATAGAGCTTGATTCCCTTAG 35154 33 100.0 35 ................................. CATCGATAAAGCCGATTTTAATTAATGAGATAAAG 35222 33 100.0 35 ................................. ACCTTTAACATGCCGTACGAATGACTGGACAAAAT 35290 33 100.0 33 ................................. CTCGGTTGCTAATGACGTGGCAGGACTCGAACC 35356 33 100.0 33 ................................. ACCCTCGACCATTTTCTCACTCATTTTATATTT 35422 33 100.0 35 ................................. CCCTAAAATGCTGACTACAAAAACACGTTCTCGGT 35490 33 100.0 34 ................................. CAACTGCGGTACCACTACTTGTATAGCGCAAATC 35557 33 100.0 33 ................................. CTTTTTTGTTTAGTTCGAGCCTTTGTTCTACAT 35623 33 100.0 34 ................................. ATCGATACACCAGCTTCAAACAGCATGGAAGCAT 35690 33 100.0 35 ................................. CTCAACCCATTGTTGGAAGTACCTTAGAATCTCTT 35758 33 100.0 35 ................................. TTCGTTTGCAGCTGGTGACCCTACTTTAGATCACC 35826 33 100.0 35 ................................. ATATTAGTTAAATAGGTTACTAACCCCTCAATGAA 35894 33 100.0 33 ................................. TCCAATGGCCCAACCAGCAATTAATGGATAAGC 35960 33 100.0 33 ................................. TTTGCATAAAAAGAAAAAAAATCATACTTAACT 36026 33 100.0 35 ................................. AAGCATGGGGGAAAGATGCAAGCACGTTGGCAGAT 36094 33 100.0 34 ................................. AGATCCGGATCAGGAATTGATTGAGCAGCGTTTG 36161 33 100.0 33 ................................. CATGACAATTTTGAAGCAGTACAAGAAGCAAGA 36227 33 100.0 34 ................................. ATCGACAGAGTTTTCCAAATTCCCCATAACGTTC 36294 33 100.0 33 ................................. TTCTGGAACCTTGAAAACACGTTGAATGGCTAC 36360 33 100.0 35 ................................. TTTTGTTTCCATTTCGTTAACTACCATTGATTCAT 36428 33 100.0 33 ................................. TCAACCAGTTGCCCTCATAATTTTGGATAAAAT 36494 33 100.0 34 ................................. TTGTTCCTCCTCAGTCTTTGCAAAATACTTCTCT 36561 33 100.0 35 ................................. CGATTGCGCCGTTGATCCCTGGGGGTGCTGGCGTA 36629 33 100.0 35 ................................. TGATAGCTGCCTCCCTGTATACCCAGCTTCAACCA 36697 33 93.9 0 .......................A........A | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 99.8 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AACGCTTCGATTTTTTACAAAAAAATTGGGCTAAAGAAGATCAGCAAATGTCATTCGATTTTGAAGAGCAAAATAAGGTGGCAGAAGATACAACAGAAATTTTTGAAGAGTATCCGGAAGTTGTTTGGCAAAAGCGAACATTAGGTGAAGTAACTCATATTTTCAGTCATTTAAAATGGCATATTCTTGTGTTTTACGGACGCCAGACAGGCCTATCAGAGTTGGCTAAAAATCAGCGCTGGGTACAAGAAGCGGATTATTCAAATTTAGTTTTTCCAAAGCCTCAGCAAAAAATGGTAGAACTTTATAAACAAGAATTTAAAATAGATGAATAAATTGTGGTGCGAACCCTAAGTGCACATAAAATCCCTAGGAGATCCGCACCACAATTTAGCTGATTTAAGCTGGAAAAACAGGAATTTTCTCATCTTAATTTAATGTTATACTGTGATTAAAGGTGGAATAGTGGAAATATGTCAGGTATTTCAACTATTTTCACA # Right flank : AAGTAAGCTGTTTGTTTATCTGAACTTAAAATTTGTTGAACTTTTGTTAAAGAGCCAGCCATTCTTCAAAATCACCCTATTTAACTTTCAAAAAACTAAAATCAAACCATTTATTTTAATAGTTCCTCCTCATTCTGACAAGAAAGCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTATATTGATATCGGTGTAATGAACACCCAAACGAAGAGCAATCAGCTGTTAGAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATCCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGTGAGTATTCTTTGATCGGCGTAAACGATCATACTTTGGTGACAGAGTCTGATGGACGTCGTTGGGTTACTCGGGAACCAGCTATCGTTTATTTCCATAAAAAATACTGGTTCAACATAATAGCGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 91362-90368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLC01000005.1 Enterococcus silesiacus strain DSM 22801 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 91361 34 100.0 34 .................................. CAGAAATCGCACTCTCAACTGGTTTAACATTCGA 91293 34 100.0 34 .................................. TTTTTCTGTCCGTTTTTCCGCAAACTTCTTGTGA 91225 34 100.0 33 .................................. ATAGATCTTTCTTTTTAAGTTGATAAATTCCGC 91158 34 100.0 35 .................................. TGTTGTATATGGTTTACTCATTTTTATTCCTCCTC 91089 34 100.0 38 .................................. AGCAGTAAAATACTTTGGTGTTTTAGCATTGCCATGAC 91017 34 100.0 34 .................................. ATAATCACCTTGTGTTTTTACTTGAACATAAATT 90949 34 100.0 35 .................................. CTTAATCCGCTCTATATCCTCTAACATTTGTTCAG 90880 34 97.1 34 ..T............................... TGTACCCACTCGACCATTGGAGCCAACTCTACTT 90812 34 100.0 34 .................................. TTCTCTCTACCAAATGCAATCAAGTATCCTTTTT 90744 34 100.0 33 .................................. AATAGGTGTGTTTTAGTGTCTTTGTTTGTGTCA 90677 34 100.0 33 .................................. TTTTTTCTGCCCATCGTTTAATCGATTAGCAGC 90610 34 100.0 36 .................................. AACAAGTGTTACTTTTTGATTTGATGTCGTTGCTCC 90540 34 100.0 34 .................................. TTGATCGCTGAAGCTTTGGACGTGAATATAAACG 90472 34 88.2 35 .......................AC...CA.... ATCGTAGTAACAGGTAAATGTGAATCAATACAAAG CA [90446] 90401 34 73.5 0 T....G...C......A...A.C.A..C.T.... | ========== ====== ====== ====== ================================== ====================================== ================== 15 34 97.3 34 GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT # Left flank : GGTGGTGCTGATATTTTACCGTTATATCGCTTAAATAAGCGTCAAGGAAAAGCCTTATTGAAAGAATTGGGCTCACCTGCTGAATTGTATACAAAGATCCCAACTGCTGATTTAGAAGATGATAAACCATTGTTGGCAGATGAAGTTGCGCTTGGTGTGACCTATGATGATATCGATGACTATGTTGAAGGGAAAAAAGTATCTGAACCAGCAAAGGAAACGATTGAAGGTTGGTATAAAAAGACCCAACATAAACGCCATATGCCGATTTCCATTTTTGATGACTTCTGGAAGTAAGCCTTTAAAAGTTCAAAAAGGTAAGGGATCGTTTGGTGCGGACCCTAAGTGCCCATAAAAACACTGGGAGATCCGCACCAAAAAAAGAGCGAAAAAGAGCATAATTAAGCTGTTTTTCTCATTTTATTTTAATGGTTGTATAGATTTACGTGAAGAAATAGTAGATATAGTAAGTTTTTGACTGTTATTTTTGTTTTTTCACG # Right flank : AAATCGAAATGAACAAAAAGAATGGCTAGAAAAATGGCCTTTTTTTTATACCTATTTTCAATTTAAAATACCTTCATTTTGTTCAAATGGTTAAAAAAAGTGTAAACTTAAACTAGTAATCTACAATAATCGGTGAATTACTCTACAATAAACGTAACTATAGCAAGAAAAAGGTGAATGAAAATATGAAAAAATTATTCAGGAAAAAAAGAGATATCGATAATGAGGAGTTTCTTTCATCTGAAGAAAAAGCACAAACGATAAATAATAATGATATTAGGATACCAGCTAATATCACTGGCTTATCTGATAGAGAGGTAGAACAGCTTTACGCAGAAGGAAAATACAACAAAGAAGTAGAAGATTTGTCTAGAACAACAAAACAGATTATTCTAGATAACTCACTAACTTTGTTCAATTTTATCAATTTATTTCTGGCAGTTGCAGTTTTTGCTGTAGGATATCCGAAGAATGCACTATTTTTTTGGATCATCATCATT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 97001-94180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXLC01000008.1 Enterococcus silesiacus strain DSM 22801 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 97000 33 100.0 33 ................................. TTCCCAATTGGTTTTGTCTGTTGCTAAGTTTAT 96934 33 100.0 35 ................................. GTATGTACAACATTGCAGAAGATAATCTATACAAC 96866 33 97.0 36 ..................T.............. CCCTGTAATATCGTTTTAAAAGACGATCGCACGATT 96797 33 100.0 35 ................................. ATATTGATGATATTTACATTAGCTGCATTAAGTAT 96729 33 100.0 35 ................................. GAATCCACACACGTTTTAGTATTTCCTCACTTAAT 96661 33 100.0 35 ................................. GTCATTCAAAGCAAGTGACTATCCATCCTTTAGTG 96593 33 100.0 33 ................................. AATTTCGTGTATATTAAAAATGTGATAGCCGAT 96527 33 100.0 35 ................................. CTCCACGTGGATTCTCGATAAAGTAATACATTGGG 96459 33 100.0 35 ................................. TTCCAGTATAACCATTGAAGTGCCAGTAAACATTG 96391 33 100.0 35 ................................. ATAATGATGCTGGAAGTCAAGCGGCGACAGCATCA 96323 33 100.0 33 ................................. AATCTATGATTTAAGAGAGGGGCTTAAAGATGA 96257 33 100.0 35 ................................. GTAACCACCGCTTTTGATTGTGAATTCCTTTTTTA 96189 33 100.0 37 ................................. GTTCTGTTTCCTGTTCGGCGTAAAGCTTCATTACGAT 96119 33 100.0 35 ................................. ACTTTAGGAGTGATCACATGATAAGAATTGATATA 96051 33 100.0 36 ................................. CGATTCTTGGACGTCTTCAAGTGTTTTGGTTAGTAG 95982 33 100.0 37 ................................. GTTCTGTTTCCTGTTCGGCGTAAAGCTTCATTACGAT 95912 33 100.0 35 ................................. ACTTTAGGAGTGATCACATGATAAGAATTGATATA 95844 33 100.0 36 ................................. CGATTCTTGGACGTCTTCAAGTGTTTTGGTTAGTAG 95775 33 100.0 33 ................................. CATAGGGATTTCTTTTGCATACCCCCACTTAAA 95709 33 100.0 35 ................................. TTTAAATGTTTCTTTGCTCAATCCGATCCACTCAT 95641 33 100.0 35 ................................. TTGATACATATTTGCGGGCGTGATCCCGCTGAAGT 95573 33 100.0 34 ................................. TTTGCATCCACTTAATCTGTTGTTTACCTTTGAC 95506 33 97.0 33 .....A........................... AAACATTTCCACACCCCCTTTCGATGATTAAAC 95440 33 100.0 34 ................................. AGTGATCGTGTGTTCTTTGTTATATCTATAAATT 95373 33 100.0 36 ................................. TAAATATAAAATGCTTGAAGATAATGAAACAAATAC 95304 33 100.0 34 ................................. TAAATAAAAACCGTAGTTATTATTTTCATGTGAT 95237 33 100.0 36 ................................. TTTTTATGTCTGGATGTCCGCCACCGCCTGGTGTTG 95168 33 100.0 36 ................................. CTCGGTTGCTAAAGACGTGGCAGGACTCGAACCTAC 95099 33 100.0 34 ................................. TGATTATGAAACAGAAGGTGTTTTGTATATTTTA 95032 33 100.0 35 ................................. TCTATGTATAAACTCCTTACGACCTATACTTCAAA 94964 33 100.0 34 ................................. AAAACGTCCACCTTTTATCGCATCGGCTAAATCC 94897 33 100.0 36 ................................. ATTTTCGACAATCGGGTGACATTTTGAACATAAGAG 94828 33 100.0 35 ................................. AGTGAGCCAACCCAGCCATTTATCAAAATTGTGAC 94760 33 100.0 37 ................................. GTTTAGTTAAATATCGTAATCTCCTGCTACTTGCCAA 94690 33 100.0 33 ................................. CTTTCGTTTTGCTCTAACACCCAAACAGTAAAA 94624 33 100.0 36 ................................. ATTAAATCGCTATCCTTCGTTTTTACAATTTTTTTC 94555 33 100.0 35 ................................. CCAATGACCGATGAGGCATTAAAAACAGCAAGAAG 94487 33 100.0 36 ................................. ATTTTATTCTTATACTGCGATACACTCATTAGACTC 94418 33 100.0 36 ................................. TTTAGAGGTATTGGCGATGTTGACTTATGGGGAGCG 94349 33 100.0 34 ................................. CTCCGTTACTTAAATCAATCCAAGGGTTATTGGA 94282 33 100.0 35 ................................. ATCCTGGTATCCTTTCCAAAAAAAGCGGACACAAA 94214 33 84.8 0 ......................ACC..CA.... | A,C [94181,94189] ========== ====== ====== ====== ================================= ===================================== ================== 42 33 99.5 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTAGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAAAAGTATGTTAGTGTTGATCACTTATGATGTCGCAACAAGTTCTAAGAATGGAACTCGTCGTTTGAGGAAAGTAGCAAAAAAATGTCAAGATTATGGACAACGTGTTCAGAATTCTGTTTTTGAATGTGTTGTTGATGCAACGGAGTTAACTAAGTTGAAGAAAGAACTGGTTGATTTAATTGATGAAGAATTAGATAGTTTACGTATTTACCGCTTGGGAAATAATTATCAAAATAAAGTAGAGCATATTGGTGCAAAAGAAAGCTTTGATGTAGAAGCTCCTTTGATATTTTAAGTAAAATTGGTGCGAACCCCAAGTGCACATGAAATCACTGGGGGATCCGCACCAAATTTTAGGTATATTTTATTTAAAAAAAGCCGTTTTTCTCATCTGAATTTAATTTAATTGCGGTTTATTTGTGAAAAGGTGAAGAAATGACATGTATTTATGTCATTTTCACA # Right flank : ACCAACCACTCGCAATCCCACCAGTCCCATAAAAATGAAGATTTTTTCATCATAATTTGCTTGACCAAGCTAAAAATAGTGGGTACGCTATGTAAAAAGGCGGTGGAAAAAATGGATAAGGTAGTTATTTTGCTAGTAGAAGACGAAGCGAGTTTGGCTAATTTTATTTCAGAAGAACTTAAGTTTGAAGGTTATGAAGTACTTTATGCCCCTGATGGAGAGCTGGCGTTGGAACTATATAAACAAAATCAAGAAACCATTACACTACTCTTGTTAGATTGGATGTTGCCAAAATATGATGGAATCACCGTTGCAAGAAGGATTCGCCGTAACAGCCAAGTGCCAATTATCATGATGACTGCTAGAGATCAGTTGGCCGATAAAGTTAGCGGTCTGGATGCTGGTACAGATGATTACATCACGAAGCCCTTTGATATAGAAGAATTATTAGCCAGAATTAGAGTGATCCTCAGACGAGCAGAACAACAAGAAAAACTTCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //