Array 1 12-1424 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBXM01000009.1 Salmonella enterica strain 103 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 12 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 74 29 100.0 30 ............................. CCGTCGGTGTTGATTTCAGCTCTTAGCTTT 133 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 194 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 256 29 100.0 31 ............................. CGTCAGAAAACGGTTTATGCCGCCAGCCTGA 316 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 377 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 438 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 499 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 560 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 622 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 724 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 785 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 846 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 907 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 968 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 1029 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 1090 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 1151 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1212 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1273 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1334 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1395 29 96.6 0 ............T................ | A [1422] ========== ====== ====== ====== ============================= ========================================================================= ================== 23 29 99.9 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCCTATAACG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 680-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBXM01000006.1 Salmonella enterica strain 103 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 679 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 618 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 557 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 496 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 435 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 374 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 313 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 252 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 191 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 130 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 69 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTGGCCACAGTCTGGTTGTGTTGTTGGACGACAGTGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18617-16941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBXM01000006.1 Salmonella enterica strain 103 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18616 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 18555 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 18494 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 18433 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 18372 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 18311 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 18250 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 18189 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 18128 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 18067 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 18006 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 17945 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 17884 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 17823 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 17762 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 17701 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 17640 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 17579 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 17518 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 17457 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 17396 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 17334 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 17273 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 17212 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 17151 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 17090 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 17029 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 16968 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //