Array 1 495-829 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 495 30 96.7 31 .............................T ACGCATCCACGGCAAGCCGCCGCTGCGCGAA 556 30 96.7 31 .............................C GCCGTCGGTCTTCTCAGTCAGGTCCGCGTAG 617 30 100.0 31 .............................. GCTGTCCGTGGCCAGTGTCGGTTCCGGGGCG 678 30 96.7 31 .............................T TCTTGGCGTTCATCGCTTCAGCTCCGGCAGG 739 30 100.0 31 .............................. GGGTGAGCGGGTCCACGGCGCCGGTGACGAT 800 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : ATGCCGCCGCCCGCGTACTTGTCGGTCCAGGGTGTGCTGCTGGCGCTCGTCAACACCCATGAGCGTGTTTTCACCCGCGAACAGGAGGAGACCAAACGGCTCCAGTTGTGTCTGGATGCGCAGGAACGGACTCAGAAACGCGCCGATCGTGCCTACTTCGGCACCGTGGACCGCCACACCAGCCCTTTTTGCCCGATTCGAAGGATGGTCCCGAGAACGGGAAGAACGGTGGCTCCTGATCACACCCGTTCCGAACCCATGCGATACCGCCCTGAGCTGTTCGAGGGATGCCTGGTTGGGGCTGGCCCGTCCCTGGAACCGTAATCCCACAAATCAAAGTTCGGTGATGGATTACCGGCAGGGGAGTGCTGTGCTCCTGCCGGTATTCTGCGGGCATGGTCTTCCTGGGGCTGAGCGCGCCGTCCGTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACTG # Right flank : AGACCAGGCACCATGCGCGACATCAGCTGAGCGTCTGCGTCCCGATGACCGACAGCACCTGGAGCTTCTCGTAGCTCTCGGTGCCGGGGACGGCGGTGTAGACCATCAGCGAGTGCGCCTGCCCCGGGTCGACCAGCCTCTGGCAGGTCAGCTCCAGCGCGCCGACCTCGGGGTGGACGAAGTGCTTGACCTCGTGGGGACGTATCCCGATCTCGTGGTCGCTCCACACCCGCCGGAACTCCTCGCTGCGGGCCAGCAGCAGCTCGGCCAGCTGGGCGGCGGGGGACTCCGGGCCGCGGAGGGTGACGAGCTCACGCAGCCCCGCGGCGTACATCCGGGTCAGGAACGGGTGCTCCTCCGGCGCGTAGATCCGCCGGGATTCGGGATCGGTGAACCACCGGTACCCCGCGCTACGGGCAGGCCCCGTGTACCGCGTCGCGTCCCCGGTCAGCGCGACGCCCATCGGGGACTGCCGCAGGGTCTCGCCGAGCTCGGTGACG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7511-7783 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7511 29 100.0 32 ............................. GGGACGGAACGGGACCGCGACGGTCACCCTGG 7572 29 100.0 32 ............................. GGGACGGAACGGGACCGCGACGGTCACCCTGG 7633 29 100.0 32 ............................. TGGCCCTTGAACTTGACGGTGGTCACGGTGAC 7694 29 100.0 32 ............................. GACGGCGTCACCGTGCTCCTGGTCGATGCCGC 7755 29 79.3 0 .............G...A...G.CA..T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GGCGCTGGTGACCGACGAGATCTTCGGGCCCGTGCTGGTGATCCAGGTCTACGACTCGGTGGGCGAGGCCGTCGATCTGGCCAACCGCACGCCCTACGGCCTGTGCGCCGGGGTGTGGGGCGCCGACCGCGCCGAGGCCGTCGAGGTGGCGGGGCGGTTGCAGGTCGGCCAGGTCTTCGTCAACGGCGCCGGGTTCAATCCGGACGTCCCGTTCGGCGGCTTCAAGCGGTCGGGGATCGGCCGCGAGTACGGGCGCTACGGGCTGGAGGAGTTCCAGCAGACCAAGGGGCTGGTGTTCGGCGCCGACGCTGTCGGCTGTGGTGGATACCGCTGACGGAAGCGGTGCGGGCGGGTGGCCGCTACCGGGAGACGATCGAAGGGGCGCACTTCTCGGCCGGTATTCTGCGGCCATGTTGTTTCCAGGGCTGGGCGCTTTGTCTGTTTTCCAGGAAGTTGGAGAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTTGTTGACT # Right flank : CGCAGCCGCCGCCGGTGGGGAGGGAGGCGTTTCCAGTCCGGCTTCCTCCCCTCGGTCCGGACCGGGCTCGGCGGTCCCGGGGCCGGGAGTGGGGCTCGCAGTGCCGGAACGGTAGCGCTCGTCCTCGCGGAGCCAGCGCACCAGGGAGGCGGCGACCAGGCTCAGGATGAAGATCAGCGGGAAGGCGGTCACGACCGACAGGGTCTGCAACGCGTCGGTGCCTCCGGCCGACATCACCGAGACCGACACCGCGGCCAGGACGATCGCCCAGAGCACGCGGTTGGCCCGGGAGGGCTCGACCTCGTTGGGCAGGTCACGGGAGGTGGCAGAGCCCATGATGTAGGACGCGGAGTCCAGCGTGGTGGCCAGGAAGACCAGCAACAGCAGCAGGAACAGCGGGGTGATGATCCAGCTGAGCGGGAACGCCTCCAGCGTGGCGAAGATGGCCGGGACCGCGCCCTCGGCCTCCAGGGTGTCGACGATGGGCGCCTGTCCGCTCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24594-24990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24594 30 96.7 31 .............................T CCACGTCCTGCCCCGGCAGCAAGAACTACTC 24655 30 96.7 31 .............................A CCAGAACGTGATCCGCGGCGGCGGCATCGTC 24716 30 96.7 31 .............................C GCTCCAGCCCGAAACCCTGGCTCGCGCCGAC 24777 30 96.7 31 .............................T CACCGGTGGCCGACCCTTCCTGCACGCCATC 24838 30 100.0 31 .............................. GCGCCGACGGCGACGACTGGTCGCTCTCCAA 24899 30 100.0 31 .............................. TGGGTGGGGCCGGGCGGGGGAAGTGGAAGCG 24960 30 96.7 0 .........................G.... | G [24983] ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCGCCGCGCCAGCAGCGCGGTGGTCAGCCCGACGATGCCGCCTCCCACCACCGCGACGTCGACCTCCACGTCCTGGCTCAGACGGGGAAACTCCGGTCGGTTCTCCACGACCGTCCACACGCTCCTGTGCTGCATCCTCTGCCCCTCCCGATCAGGTCCAGACGCCGTCGGCCCCCGTGCGACGGACAGCGCCTACACCAGCTACCCAGCGTTCCCGGTCGCTACCGCCGGAGCCTCGGGTCGGGGCATGGACCCGCGCCGCTTCCAGAGCCGGGGGAGGGGTGCGTGGCGAACACGGGCTGGGCGAAAGGAGAGTGGTGGTGTGCGGTGGTTCCCCGGCAGAGGGGGATAGCGGTCTGTAGGTTGGGTCTTCTGGAGCTACAGCGTTTTGGTGGTTGGTGAGTTTTTGGTTCTCTTGGGGCCTGTGGTGCGTGTGTCTGTTTCTGAAGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCATTGACT # Right flank : GATCCCCACTGACTTCCGCGTTCGTCGTCCCCGGAAAACCGCTCGACGGCTTCGGGGCGACCTGACACAGTGGCGCACCATGACGGGTTCCGAACTTGTGACCGCCGCGGACGTGCGGCTCATGCAGGGGCTGGCGCAGCGCGTCACCGCGATCCGCCCCGACCTGGTGAACAGCGACGCCTCGTTCGGCGAGCTGGCCTGGAACTGGGGCCGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGGCTGTGGTTCTCCGGCGGGGAACTGGTCGCGTGGGGCTGGCTCCGCCTTCCGCGCCGGGTGAGGCTGAGCGACGGCTCGGTCAGGGACGTCACCGGCGCCTACCTGATGCACCAGGTCCACCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGCCTGGTACGACGCCACGGCGGCGGGCCTCGAACGCACGGTGCTGCCCAGCGCCGCCGACGGGTTCGCCCTGGAACGGTGGGCGGCGCACGGCTACG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 375663-377458 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 375663 29 100.0 32 ............................. GGCAGCAGGTCCTCCAGGGAACCGCCGCCCCG 375724 29 100.0 31 ............................. CACTCGCCTTCACTCTGTCGAACGACCGGTC 375784 29 100.0 31 ............................. GTCTGATCACGTCTATGGTGGTCGGTCTTCG 375844 29 100.0 32 ............................. TTCACCCCCCGGCGTCCGGTGACCCGTGCTCC 375905 29 100.0 32 ............................. CGCACGTCGATGCTCCCCGAGACGCGGCGGGA 375966 29 100.0 32 ............................. CCGGGGCGGGTCACGGACGTGTACCTGCTCCA 376027 29 100.0 32 ............................. CCGGGGCGGGTCACGGACGTGTACCTGCTCCA 376088 29 100.0 32 ............................. GCCATGCTCGCGTCCGAGACCCGCAAGATCCA 376149 29 100.0 32 ............................. GTGACGTCGTCGGGCGTGTAGAGCTCGCGCTT 376210 29 100.0 32 ............................. ACTTGCCCCCCGTTGGCCCTACTGCTGTCTCT 376271 29 100.0 32 ............................. GCGTTCATCAGCTGAGGCTCACCGGCGGCGGG 376332 29 100.0 32 ............................. ATCCCGGCCAGCCCCCTGCTCAGGTTGCCGCT 376393 29 100.0 32 ............................. GGATTGACGGGGTTCGTAGCCGGTGACGATTC 376454 29 100.0 32 ............................. GCTCAGCCCACTGAGGGCTGAGAGGTCACCGC 376515 29 100.0 32 ............................. AGCATCATGCCCGTCTGTGCGGGGGAGCCCAC 376576 29 100.0 32 ............................. CCGCAGGTCGAGAGGTACAGGTCAATCTCGGT 376637 29 100.0 32 ............................. GGGCGACAGACCACCCGGCTACCAACCGTGTC 376698 29 100.0 32 ............................. GAGGAGTTCGCCTACGCCATCGCTGGGTCGGG 376759 29 100.0 32 ............................. TACGGCCAGCCGGTCGGTCCCTACCGCATCGC 376820 29 96.6 32 ........................G.... TGCGCGGCCACGTACCCGGCGAGGTCGATCAC 376881 29 96.6 32 ........................G.... GGATGACGCAAGCCGAGATCGTCCGGGCCACG 376942 29 96.6 32 ........................G.... CCATCGACAGGGGCACACGCCCCGCCGACCTA 377003 29 96.6 32 ........................G.... GCCATCGCGATCGCCGCTGTCCTGGGCATGCA 377064 29 96.6 32 ........................G.... GCGACCCCCGCTGACGCTCCCATCGTCGTCTC 377125 29 96.6 32 ........................G.... CCCCTCCAGCGCAAGCTGGGCGTGGACGCTGA 377186 29 96.6 32 ........................G.... ATGATGGTGGTGGCGTTGGACGCCGGGGCGGG 377247 29 96.6 32 ........................G.... ACATCGACCTCCTCACCGCAGAATCCCCCCAC 377308 29 96.6 32 ........................G.... GCCGTCAGCGTGGAACTCAGAGGCGTATGGGA 377369 29 100.0 32 ............................. CGGGCCATCTGCATGGCGGCCTCTTCGGCGAC 377430 29 86.2 0 ........T.T.T...........G.... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGAGCCCCGCGCACGCGGGGATGAACCG # Left flank : GAACAGGGCTGAGGCCCTTCCGGGGTGAGCCCGGACGGATCGTGTGGATGGGTGTTGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAGTTGGGGCACGCCTATCGGATGCTGCGGGGCGCCGGGTTCCCGGGTCTGGAGAGCTTTGTCCTGGAAGCCGTCGCTGGTCAGGATTCCTGCCGGGTGGGGTGTGCGGCCCTGGAGCAGCACTGGGATCACTCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTAGTGCTCTTCAGGGCTGTTTCTCCGGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAAAGCCTGTGTGCCCGGCGCGGTAGTGGGGATGAGCGCCGCCGTGCACTGTGTGAGGATGTACGTCGAAGCCGGGAGTGCTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTGCCGCAGGTCGTTAAGC # Right flank : GGTGACCGTGAGTGGCCACTGTGCGTTCGTGGCGAAGCGTGGTGTTCTCGGGGCGGCGGACGCAGAGAACCCCACCTACCGAGAGGGAGGTGGGGTTTGTTCGCTGTGCCCGAGGTCAGACGGCGGGGTTCTCCGTCATGCCGAGCTGACCGAGGTCGATCCGCTCGGCGCGGCGCGCGAGCAGGTACAGGTGCCCCGAGGTCCGGTCCATCTCGCGGATGAGCGTGAACCCCTGCCCCTGGTAGTACTTCGCCAGCTCGGGGAAGAAGCACCCTTGCCGCACCCACTGGCGGTCCTCTCGCGCCGCCCGGTCCACCGCCCACAGGTCGATCAGGGTGCCCGGCTTGTGCTCCCGGTAGTCGGGGTGGGTGCAGGTGGAGAACAGGTACAGGCTCGGCTCGTCGGCCTCATCGGGGGTCCAGTCCTTCGGCGGCGCGTGTTCGGTCACCGTCGTGCACCCGACGACCCGGTCTTCGTCTTCGAGCACCCACATGAACCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCGCGCCAGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3916821-3916425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3916820 30 100.0 31 .............................. ATGACTTGTCCGCTGAGAGTGAGCCGTTGCT 3916759 30 100.0 31 .............................. CCGACGGGTTACTGATGAGCTTGGCGCGCTG 3916698 30 96.7 31 .............................T CCGCGTCCGGCGCGGTGAGCTGGGTGGGCAG 3916637 30 96.7 31 ..G........................... CCTGCGTCTGCGCCTGGAGGGCGGCCAGCTG 3916576 30 93.3 31 ..G..........................C TCGGCGCGACCGTGGGCAACCTGGTGACGGC 3916515 30 93.3 31 ..G..........................A GCGCTGGGCGCATCCAGGTAGAGGACAAGGA 3916454 30 93.3 0 ..G.........................A. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.2 31 GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGCTCCCGGTCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGCTTGTTGAGCACGGTGGACCAGGACAGCCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCGTGGTCGTGGTAGGCCACCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGAGACAGTCCGGACGCGACCTCCGGTCGGGGTGCGTTGCGCAGGTGTCTCGCTGGTCGCGGTCCTGATCAGTAGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGATGGTTCGGACTTGGCTCTGTGGGTGAAATGCCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAATTTCCCAGGTCAGTGACT # Right flank : TGAGCAGGTTTTGCAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTGGCGGCCCCTTTACGCGTGTTACCGGGAACGAACGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGCGTGTCACGGACGGCGGCACCGGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCGCCGCTGGGCTGGCTGTAGCTCGACTTACGGAAGTTCAACAGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGGCGTAGGTGGTTCATCAGGTTTCTGTAGCGGGCGACCTCGTCGGGCTCCTCCAAGTAGATTCCATCGGTGTTCGTTTCCAAATAGACCACCGTGGGGTCGACCGATTCGGGGAACTCCAAGATGACGAAGGGACCTCCGCTTCCCGCGTTGAGCTGGGACGCGCGTGTCATCTGGAGG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6485207-6485600 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6485207 30 100.0 31 .............................. CCGCGAACGAGATGCTCATGGGCGGCGGGAT 6485268 30 96.7 29 .............................C TCCAAGCTCTGACCCAGCTCACGCCTGAA 6485327 30 96.7 31 .............................G ACGACGGGGTCGCTGCTGCTGGCCAGGGTGG 6485388 30 93.3 31 ............................GA TCCTCCTGCCGCCGCCCTGGGACGCGATGAG 6485449 30 100.0 31 .............................. CTTCTCGGGTCATTGCACTTTCTCCTGTTCT 6485510 30 96.7 31 .............................A GGACGGAGCGCGGGTGCGCCTGGTGTGCGGG 6485571 30 93.3 0 .........................C...C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CGAGCCCGACCGGGTCGAGGACGTGGAGGCCTACCTGCGGGACTACGCGCGCCGCCAGCTCACGGTGGTGCTCACGCCGCGGTTGATGCGGTTGAGGCGGATGGTGATCGGTGAGGTCGCGCGGTTCCCGGAGCTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGAGGGCGATCGCCGGGCTCGCTGAGAGCTTCGCCCGGTTGGGGGAGAGGGGGCTGCTGGCGGTGGGGGACCCCCTGCGGGCGGCGTCCCACTTCAACTGGCTGGTGATGTCGGAGCCGGTGAACCGGGCGATGCTGCTGGGGGACGAGGCCATTCCGGCGGAGGCGGAATTGTGCCAGCATGCGGAGGAGGGAGTGCGGGTGTTCCTCGCGGCGTATGGGGTTGACGGTCGTTAGGGGAGTTGTGGGGCGTTTGGGTTTTATGGGGTCGGTGTCTGTTTTTCGGGAAGTTGGAAAAACAGGCGCTTGCCACTGGTAAGTTCGCAGGTGGTTGACT # Right flank : CGATCGCACCAGCGGCAGCTACCTCCTTCGTCACCCCAGGCCCGGCACACCCGCTCACATCCGGTCAGACGAAGTACCGCGCCTGGAGGCGAAACAGCTCGGCGTAGAGCCCACCGGCCCGGCTCAACGTGTCGTGGGTGCCGGTCTCCACGACCCGGCCGCCGTCCAGGACCACGATGAGATCAGCCGCCCGGGCGGTCGTGAAGCGGTGCGTGACAAGGACGGTCACACCGCCCTCCTGGCGGCCCAGGTCGGCGTACTGCTGGAACAGCCGCTCCTCAGCCCGTGCGTCGAGGCTGGCGGTGGGCTCGTCCATGATCCGCAGCAGCGGCGCCCGCCGCATCGCCGCACGGGCGTTGGCGACCGTCTGCCACTGGCCCCCGGACAGCCCCTCGCCGTCCCACGACCCGCGCCCGAGCCGGGTGTCCAGGCCCCCGGGCAGCGAGGCGAGGAGCCCGTCCCCGCCGACCGTCCGCAGCGCCTCGATGACCCGCTCAGGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 6490881-6491581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6490881 30 96.7 31 .............................A AGGCCACCCACTGCTGGCAGGACCCGCGCAC 6490942 30 100.0 31 .............................. AGTCCAACAACGTCACGGACGCCCCGTACTT 6491003 30 96.7 31 .............................G CCATCAACGCCGCCGCCCGCTCCGGTGGTAT 6491064 30 96.7 31 .............................A AGAAGTTGCGCGGGCGCTGGTCCGGACTGGT 6491125 30 100.0 31 .............................. GGTGCGTGACCGGTGCGCCCAGATGGTCGAC 6491186 30 96.7 31 .............................G GTCACCCTCGGCCCGGCATTACGGGCCATCC 6491247 30 100.0 31 .............................. CAGGCCGCCGACCCTCGCGCGGCCCGCCACG 6491308 30 96.7 31 ............................T. ACCACCCGAGACCGCTTGGCCATCGGGACCG 6491369 30 96.7 31 ............................G. GGGTCCGAGGTCGGCGGGCGGGCGGTCCTCG 6491430 30 93.3 31 ..................A..........G GCACGGCACCCTGGACCGCCGCTGCGTCATC 6491491 30 96.7 31 .............................G GGAAGCCCACCGGCACCGTCCGCAAGGTCGC 6491552 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TCGGCCACACGCCGTCCGAGGAGTTCGCCCATATGACCGAGAAGCAGCGCAGGGCCATGTTCCTCGCCGAAGAGCTCCTGCCCGGTCTGCCGGACGACTTCGAGGCCCTCGTGGTGGAACAGCGGCCCCGGAAGCTGACCCGTGAGGGAACCGCCGTGGACGCCCACGACTCCACGCTGTTCGCCCGCCGTCGACGCTGAGAGCGACCGGCACGAGGCGTCTTGATGGGGGCCGACGGTCCCGGGAGCACCTTTGACGGGGCGTTTTCGGGACCTGTTGTCTGCGGGAGCTTCGGGACCGCGGTATCCCCTTCTGTTGGTTGGTGATGTCGGAACCGATGAGCCGGGTTATGTTGCTGTGGGACAAGGTGGTCTCGGGGCGTGTGGCCTGGTGGCGATTGAGGGGTTTTGTTGCTTATGGGGTTTTGGTGGTGCATGTCTGTTTTTCAGGAAGTTGGAAATTCGACTGCTTGCCATTGGTAAGTTCGCAGGTCGTTGACT # Right flank : TACTTCCCCACCGGCACCGCGCCGCCGCCCGCCTCCGCGCGGGCCCTGGCGGCCTCCGCGCTCCGGCTGCCCTACCAGTTCACCTTCCCCAAGGAACTGGACCGCGCCATCACCGAACTCGAAACCGACCTCGTCCTCGCCTGGCAGACCAAGGACGCCCACTGGATCGCCGAGGAACTCATCCTCTTCCTGGACGAGGACGACCGCGCCGAACTCACCGGATTCCGACTGCACTACACCCCGACCGACGGACTGGAGGTCCACCGTGCCGACTGACGCCTCCGGGCCAACACCACCCCCACCGCGACCCGCGCCCCCGCCGACGCTCCCGCCCTCCTTCGACCTGACCAGCCGACCCTGGGTTCCCGTCCAGCGGCTCGACGGGACGGAGGCCGAACTCTCCCTGACCGGGGTCTTCGAGCAGGCCGCGCGGATCCGGCGCCTGGTCGGGGACGTGCCCACCCAGGACTTCGCCCTCCTGCGGCTGCTCCTGGCGATCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 6498446-6499092 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 6498446 30 100.0 35 .............................. CCTCGGGGGCGCTCTCCAGCTTCGCCACGCGCGCG 6498511 30 96.7 32 .............................A AAACCCTTACTCAGCAGGGGTTTAGGCGTACA 6498573 30 100.0 31 .............................. AGCGTCGTCGACCCCAGGCTGACGGAGGTCT 6498634 30 100.0 31 .............................. CTGCGGTTGCGGGGTTGTCCGCGAGCGGGAG 6498695 30 100.0 31 .............................. CGGACCGCCACGTTATCCCGTGGGCCGAGCT 6498756 30 96.7 31 .............................T GGCCGTTCGAGGGTGAGCGCGTTTACCTCGG 6498817 30 93.3 31 ..............T..............G CGGACCGGCCCACCCGGCTGGCGACCGTCGC 6498878 30 96.7 31 .............................G CCGTCGCCGCCTACGCGACCGCCCTCGGGCT 6498939 30 100.0 32 .............................. ATGCGGCAATCCACCCCACAGAGAAGCCCGTG 6499001 30 96.7 31 .............................T CGATGACCGAGGTCGACGGCACCGGGTCGGA 6499062 30 96.7 0 .............................G | T [6499089] ========== ====== ====== ====== ============================== =================================== ================== 11 30 97.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGGGTGAGCTGCTGGAGTCGGGTTACAGCTATGCCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGTCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATATCGGCGGGGGTGTTCATCGGCAACCCTTCGCGCCGGATCCGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCGACGACTCCGAGCAGGGCTTCACCTTCCAGACCTTCGAGCGTCACTGGGAGCCGGTGGACCATGAAGGGCTCACCTTGATGCATCGCCCCAAGAAGGTGCAGGAGGAGAACAGAAGGCCTCCGAAGAGCGGGTGGAGCAAGGCGTCGAAGAGGCGGCGCTTTGGTGGGAGGTGAGTTGTTTTGGGTGCTTTGATGGATTGTGGTGCGGGTGTCCGTCTCTGAAGAAGTTGGAAAAACGGCCGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GAGCGCGAACGGGCAGCCCATGGTCAGGTGATGGCGTCGATCGGTAACAGGAACGCTTGTTCCCGGGTTCGAGCAACACCATCAGCCTTCTCGTCACCGAAATGTCGATGAGGTTCAGCAACGGCGCCACGGGCGAGAGTGTTGGCGGCTTCGGAAATGCCAGTGGATCGGCCACCAACTCGTCAGTGAGCATCGGCCGCGGTCAGCGGGCACACGGTGAGCGTCACCGCCAACGCCGCGGGCAAGGGGCGCCAACGGTGCTGGCCCTGCCATGGCGTCTGGTCGAAGGCCGACGAGGGCCGTTTCAAGGCCGAGGGGTGCCGCGGCACTCGGCTTCGCCGGTCGGGCCCGCAGGTGTGACGCCGATCAGCGACGCACCATCCGGACCAGGGCGGCGGTGTCGTGTCGGCGGAACCAGGCCGCGACACAGACCAGGACCAGGGTGACCGCCGGGATGGCGACCAGGTCCGGGGTCACGATGGCGCTCAGGGCCGTCGCGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 6506165-6506865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134501.1 Nocardiopsis dassonvillei strain NCTC10488 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 6506165 30 100.0 31 .............................. GAGAAACCGCTCATGAACTGGAGAAACACAT 6506226 30 96.7 31 .............................C GGGGCCGTGGTGTTGGACGCCGCGGATGTGG 6506287 30 100.0 31 .............................. CGGACGCGGGCGATGACTTCTTCTGCGTCTT 6506348 30 100.0 31 .............................. CGTCGGCCTTGACCATCATCTGCACCCCGCG 6506409 30 96.7 31 .............................C GGCCGCCGGGCCGCCGCGGTGGCCAGCTCCT 6506470 30 96.7 31 .............................G AGGCGGCGCGCGCGGACCCGTCGTCGCTGTC 6506531 30 96.7 31 .............................A TCCCGCGTGGCGCTGCCCTCTACCTGCGCGG 6506592 30 96.7 31 .......................A...... ACTGGCGAACCTGCTGGAGGACCTGTCCGAC 6506653 30 100.0 31 .............................. GCGCGGCCGCCGCCTTGTTTGCCCACGTCCC 6506714 30 96.7 31 .............................G GCAGTGGTGAGGGGCTCGCCCTTCAGGCCAA 6506775 30 96.7 31 .............................C CTCCGTCCGTAGGTGGCCAACCACAGGAGCA 6506836 30 90.0 0 ...............A.......A.G.... | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CAGGATCAGTGACGCATCCTATCCCTGTGCCCCGGCCTTCCAGCGACCTGCTGCACCGACCGCTTCCGCCGCTGCCTCGTCGTCGCCCGCTGGTCGGCCCGTTCTGCCCGGCCTGCGAGCACCCTTCGTGCCGTCGGCGTCGGGCCGCGCGCCTGCCCCGCCTGGGCGGCCACCGCTCTGAGTTCACTCGCGAGCACGCCCGGGCCGCAGTTCTCCAGCGGCATCACCCGCACCTGCTCATCTGGTTCGGTGAGCAGACTCTGTCCTACTGGGTGGCCTCGCCTGTCGGACTGACTGAGGTTTCCGAATCCGAGGTGCTGTTGCTCCTCGCGGAGCCGGTTTCCGTGAACTGAGGGGTTACCGGCAGGGGCGTGATGCGCTCCTGCCGGTATTCTGCGGACATGGTCTTCCCAGGGCTGAGTGCGTCGTCCGTTTTGTCTGCTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : TGGGAGTACGGCTGATGCCCTCCCAAGGCCTTCAGGGACAGGAGTCGTAATCCACGGACGCGCTTCCGGCTGCGGCGTCGTAGCACTGGCTGACCGGCGGTATCCCGGAGACACCCGGCACGAAGTCGGGGTCTCCGAAGGTGAGCGGGCCCCGCTCGGGAGCACCCGGGAAGGTGAGGACGAGCCTGTCGCCGACCGAGACCGGTCCGGGGGCCTCCTCCGGCTCGATCGGGCCCTCAGGAGTGGGCACCGTGAACAGCTCAGGCACGGAGGCGCTGTGGCCCTCGACCAGGTTCCCGACGAGCACGGTGAAGCGCACCCCCTCGGGGACCTCCTCCACGGAGCTCACGGAGAGGTGGAAGAGCGTCTCGTACGAGTCAGGGGTGGCCTGGAAGGTCGGCATGCCGTTCGGCGAGGTGATCACCTCCGCCAGCCATTCGGCGTTGGTGCCGAAGGGCGTCGGTTCCGGCATCACCCATTCCGTGTCGGGTCCCTCCGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //