Array 1 71-1350 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000173.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 71 31 71.9 34 CAACAGG.T.-..................... ACTTTGGCTGTGGCCTCGACCAATAGGGCCTCGG 136 32 100.0 36 ................................ TTCGTACAGGCCTCCGCAGACTGGGCAGCCGGCATC 204 32 100.0 34 ................................ TTCGGCGCGCCCCCCCGGCCAGGCCTTCGAAATA 270 32 100.0 34 ................................ CGGCTATCAGGCGCTGCTGGAATACCTTGACGAG 336 32 100.0 33 ................................ CGGTTCGATGTGGGCGGCGCCCCGCGGTTGCTG 401 32 100.0 32 ................................ GCGTAGAGCGGGTGGAGAGCTGGCCACGTGGC 465 32 100.0 33 ................................ CAGTGGACCGGTGCCGGGTGGCACGGGATCACT 530 32 100.0 33 ................................ AGACACTCCCCCGCCGCCGCAGGTTGGCCACAG 595 32 100.0 33 ................................ CGGCCCCGGTCGACCCCGCCTTTGCCGAGGCGG 660 32 100.0 34 ................................ CGCGCCATTACATCCTCCTGTAGTCTTCGAGATC 726 32 100.0 35 ................................ CCGGTAATGCGTGGGTCTTCGACAATGGCCGGGTC 793 32 100.0 35 ................................ TGTCATGTCCGGAGCCCGGGTGGCGGGGGCTGGTG 860 32 100.0 34 ................................ GTCATGTCCGGAGCCCGGGTGGCGGGGGCTGGTG 926 32 100.0 33 ................................ CCGTGCTGAACATCAAAGAAGGCCTGAACGATC 991 32 100.0 33 ................................ ATCTCGCCCAGCACCAGAAGGTGCTGGGCCGGT 1056 32 100.0 34 ................................ CGCGCCTGCCGCGACCACGCCGCGTATGATGTCG 1122 32 100.0 33 ................................ GGGCGGTTGCCATGCCGCCGCTGGTGGCGGTGG 1187 32 100.0 35 ................................ GCCCGATCCCAGGTCCATATGGCTGGACGTGAGAT 1254 32 100.0 33 ................................ GGGGTCACGATCCGGCCCAAGACGGCGGCGGCG 1319 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 98.6 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : ATCAGGCGCCGGCCGCAGGCTCAAGGGCGGATCTCACTGCGATCGCGACACATTCCGAAGACCCATTCTGC # Right flank : TTGGGCGCGCAGCCGCCGTCGATTAATACCAAATCTCGTGAGTCCTGACTCATAGGGGATTCCCAAACGGTCAGGAGTTCGATTCAATGATCGCGGACCTGAGGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 732-101 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000200.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 731 32 100.0 34 ................................ ACTTGGCCCCAACTCATAGAGCAGATAGGGCATA 665 32 100.0 33 ................................ ACGGCCGCGCAGGACCAGTTCGGGCGGGATCTC 600 32 100.0 35 ................................ GCCTCGCCGATCGATCGGGCCTGTTGCGCCTCGAC 533 32 100.0 33 ................................ AGATCCGCTGGTGGTCCTGGGCGACTATGGCTC 468 32 100.0 34 ................................ GGCCGTCCAGCCGGTCGCCGCCAGCACCGCCGCC 402 32 100.0 36 ................................ ATCTGGCCGACGGTAGAGCAGCGCTCCCGTCCGGTA 334 32 100.0 36 ................................ ATCTGGCCGACGGTAGAGCAGCGCTCCCGTCCGGTA 266 32 100.0 35 ................................ CGTGCTCGCCAGCACCTCGGCGGCAGTGCGGCCAT 199 32 100.0 35 ................................ ATGGCCCGCGCCTGGATCTGCGGCACCGTCAGCGC 132 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TGAGGATTCGACACCCCGAGCCTAACGGCTCAAGGCGAGCAACGCCGCTCTCCCTTTTTCAACAATGACCGGGACATCCCCGAGCGTGAATTGAAACCTGGTTACGCTGCTGGCGGCGTGGTTGGTAAT # Right flank : CCTTTAAGTTGGCATCTTAAGAGCCTGTTGCAGAATGGGCTCCAACCCTGTCGATGTCCGCTTGCCCCCGCGCTGCGGGGCTGATTCCCTCGGGTGATGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 775-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000201.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 774 32 100.0 34 ................................ GCGGTCCGTGCCTGGGCGGCCGCGGCCAGCGCCC 708 32 100.0 43 ................................ TGGAGGCTCCGGATCAAGCTCCGATGCCGATCATCGAGAGCGT 633 32 100.0 33 ................................ AGCCGGTAGCCGAGCAACGGCCAGATGCCGTTG 568 32 100.0 33 ................................ CGGCCCAAAAACAATGCGGTCGTGCACGCGCAC 503 32 100.0 33 ................................ GTCTCGCTGATCCTGGCAGGCTGCTATTCGGAG 438 32 100.0 34 ................................ AACAAGGAAATAGGCAGGCGGGTCGCCCGCCAGA 372 32 100.0 34 ................................ CATGGCCGAGTGGCCCTGGCCCACATCTGGGGGC 306 32 100.0 34 ................................ GGGCCGGAGTTGGAGGCGGCACGGTCTCTTATCG 240 32 100.0 34 ................................ AAGACTGCGTCAAGGTCATCGTGGAAGGCTGCCT 174 32 100.0 36 ................................ GCGAGGCAGCGGCATCGGTGACCGACTTCCAGGCGG 106 32 75.0 0 ........................CCGCGGGG | ========== ====== ====== ====== ================================ =========================================== ================== 11 32 97.7 35 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : CTCGTCGATCAGCCGTGGCTCATCATGTCCATCGGCATGCGATCATGGGCACATGGGTGACCGTCCATGGGACTTGGTATC # Right flank : GATGTCCCGCCCGATGTTGAAAAGGGCTCGGCGGACGTCGCTGGTTGATGAGGCTATGCAGCCTCGCAGACGGGG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 736-111 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000204.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 735 32 100.0 35 ................................ ACGGAGGGCGGTGCGGTCGTCCAGGCAAGCGCGCG 668 32 100.0 34 ................................ AATTATTTTCGTATATCGGCGATGAAGACCTGCC 602 32 100.0 34 ................................ AATCAGGGCCCAGTCGGCCCAAATCTCGTCGGGA 536 32 100.0 33 ................................ CGGGGGGCGGTATGACATCCGTCCCCCTGAGAT 471 32 100.0 33 ................................ CAGTGCCGCCTTGAGCTTGGGCATAAGGCGTCG 406 32 100.0 34 ................................ GGTACAGAGCCTGATCGTCGAGGGCGATCAGGAG 340 32 100.0 35 ................................ CATCGCCCGTTACCGCCTCCATCGCAACGGCGCGC 273 32 100.0 33 ................................ TGATCTGAGGAGTACCCCACTCGTGGCTGGTCA 208 32 100.0 34 ................................ GAAGGCATCGAGTTGCATCGCAGGCCCCGACGAC 142 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : CGTCGATCAGCCGTGGCTCATCATGTCCATCGGCATGCGATCATGGGCACATGGGTGACCGTCCATGGGACTTGGTATAAGGGGTT # Right flank : CAACCCCATGCAAAAAGCTTGTCGCCATGGCTCATACCAAATCTCGTGAGTCCTGACTCATAGGGGATTCCCAAACGGTCAGGAGTTCGATTCAATGATCGCGGACCTGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 48398-49738 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000042.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 48398 32 100.0 33 ................................ CCCGAACGATGGCCCCGGCGCCGACGCCGGGTC 48463 32 100.0 34 ................................ GATGTCGTCGGCCAGCCCTAGGCCGACCAGGGCC 48529 32 100.0 34 ................................ GATACGTTTGATCATTGCGTCATCCACCATGCGG 48595 32 100.0 32 ................................ ACAAACGCGCCACATCCGCCTATATTTTAGGA 48659 32 100.0 34 ................................ GTGCCGGCTTGCCCGTCGACACCGTGAGGAACAT 48725 32 100.0 34 ................................ CGGTTCGCTCCGAATAGGCGACCCGGACCATGTC 48791 32 100.0 33 ................................ CACGAAAGATCCTGACAGTGGCCAGCGCCGACC 48856 32 100.0 33 ................................ CCTGGTCTCGATCCAGTGGAAGGTGAATCCCAG 48921 32 100.0 33 ................................ TCGTCCGTCGATGCCCGGCTGTTGCCGGCCGGA 48986 32 100.0 32 ................................ CGTGCCGCGACACGGCGCCCCTATCCATATCG 49050 32 100.0 34 ................................ CTCAAATCACACAGATCGAATTCGACAGTCAGGT 49116 32 100.0 33 ................................ GCGGCCGACACCCTCGACCGCTGGTACGACACC 49181 32 100.0 35 ................................ AGACCGGCGAAGGCGTCGAGGGTGTCAGCCCGGAG 49248 32 100.0 34 ................................ ACCGTCTCACCCGCGGTCAGCACGATGTCGGCTA 49314 32 100.0 32 ................................ ACGGCATCTCGGACCGGATCGGACTTGGCCTG 49378 32 100.0 34 ................................ GCCCTGACCCACTCGACACAGTCGACCGGCTCCC 49444 32 100.0 34 ................................ CGGATCACACCATACCGCCGGCCGTCCACCTCAT 49510 32 96.9 34 .......T........................ GCGGTGATCATCAGCGGCTACACGCCCGCATCGC 49576 32 100.0 33 ................................ TGGGCGTCGGCCTCGGCGCCCAAGCGATCGATG 49641 32 96.9 34 ...........T.................... CGGTGCAGTCGGTACCGGGCGATCGACACCGCCC 49707 32 90.6 0 .....C............C.....C....... | ========== ====== ====== ====== ================================ =================================== ================== 21 32 99.3 34 GTCGCTCCCTTCGCGGGGGCGTGAATTGAAAC # Left flank : CATCGGCGCCGCCATCGGCGGCCATGTCCGCGTCGGCCTGGAAGACAATCTCTACGCCGCCCCCGGCCAACTCGCCCGCTCCAACGCCGAACAAGTCCGCCGCATCCGAACCATCCTCGACGCCCTGTCGCTGGACATCGCAACCCCCGCCGACGCCCGCCAGATGCTGGCCCTGAAAGGCCCCGCCAACACCGCGATCTGACACCGGCCGGGGCGTGAGGGCGCGCGCGCGGTTTTCAGAGGGAAGACCACGGGGGCCGCGGGCCCCCGCACCCCCATCTCGTGGGCCCAGGCGGCAGCCGTGTGGCGCAGATACCCCGGCCTTGCGCGAACCCCAAGCACACACAAAAACCCCGGGAGGTTCGCGGAACGGAAAACCGTTCTGAATCAGTGGGTTATTTTTTGAATGACATGTCGTACATGCGGAGGTGTGACTCCCGGAGGGGATTCGCGGAAACCGCCTTTTTCAGGTGTGATATCAGGGTATTAGTGGGGGGTGA # Right flank : CGCCGCAGAAGCGATTACCGTTGAGGCCCAGGGCCGGCCGCTCCCCCACCGACCATGCCCTCGCCGCACCTGAAATGGGCTGCTTCCGCCGTGAGGATATACCCAGGATGTGGCCTATTCGCCGTTGCCGCCGGACAGGCCGCCTTGATTGTCAATCCGCTGTGAATTACATTGTCATGCACGAATAGAAGGGGATCGATATGGCCGCCAATCAACTTGTCCAAACCAGGGTGAACGGTGAAATCAAGGCTGAAGCAGCGGCTGTGCTGGCCGCGATGGGCCTGACTGTTTCCGATGCGGTGCGGATGCTGCTCGTCCGTATCGCACAGGATAAGGCTCTGCCATTCGAGCCATGGACCCCGAATGACACGACCATTCAGGCCATGAAGGAAGCCCGGGCCGGCAAGGGCGCCCGCTTCGCAAGCATTGATGACCTTGTCGCCGATCTGCATGCGGCAGATTGAGCGGACAGGCCAGTTCAAGCGAGACTATAAGCGCGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGGGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9562-8679 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000074.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9561 29 100.0 32 ............................. AAAATGTGTAAATTCAATTGACTTCTTATAAT 9500 29 100.0 32 ............................. CGTCCGCGCCACGGCCGCAACCGCGGCCCCCA 9439 29 100.0 32 ............................. CGCCATGGCTGACCCGCCAATCGGGGCCGATC 9378 29 100.0 32 ............................. CGCACGATCGGGGCGCACTTGACGACCCTGGC 9317 29 100.0 32 ............................. AGCGTGCAAGCGCTGGTGGGGGGCAAGGTCAA 9256 29 100.0 32 ............................. TGCGGCGGCTTGGCGTGACCACGCGGGAGACA 9195 29 100.0 32 ............................. TGCGCGCCAAGGGACGCGAGGAGCTGGGCCTG 9134 29 96.6 32 ............................T ATTCAAGAAGCACTCAGCCCCGGCTATCTCGC 9073 29 100.0 32 ............................. TCAATGGCGGATCAGCTCGCGATTCCACCGTC 9012 29 100.0 32 ............................. CCGTGCATTCACCCCCACATAGGCAGTATGGG 8951 29 100.0 32 ............................. AACGGCGCGAATAGCGTTATGGGGCGATTCCT 8890 29 100.0 32 ............................. CCGATCTGCACCGCCATGCCGGGCATGGTCCA 8829 29 93.1 32 ..C.........................G CAGCATGCCGCCCGCCGGGAGGTTTTTCACGT 8768 29 96.6 33 ..C.......................... AAGGCCTGAGGCCGGTGCGGACCTATGTCCGAC 8706 28 79.3 0 A...T..............T-....T..G | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 GGTTCCCCCGCACAGGCGGGGATAGACCC # Left flank : TATGGGCTGCATGGCCACGGCGCCCAGAATGCACAGCGCAAAGGCACTGCGTAATATCTGCATGATGTCCTCCCTTTATAAACGGCGATCGGCCGTTTTCAGAGGAACACATGCCCCGTTATTCCAGGTCACCACCCAAAGCGGAAAGACTGTTTTTCAATGATAACGCCACCCTCTCCCCATCACCGGTCGACAATGTTCGGGACGGTAAGGCCGTGCGCATCAGATGGCGTGCACGATATCTTGACCTCGCACATCCGGACCGTGCCGGCCAATACATCCCCTGGCCGTCGCGGGCGATCAGGGATGACACAGGCCGATGCCGCCGGCAACACCCGCATACTGCCACGCCACTGACACCACATGACAGGGAACCGGCCGTCCTATAGCCTCATCCGTGTGCGGACCATGAAGATTGCCGGCTATGGTATGCAGTGCGCTGACCCCTCTCGTTCGCTTTTTGGAAAAGTTTCCAGCAGAATAAAGGCTTAGAAGCAAGG # Right flank : CCATGCCACATCATTGCATGACCTGTCCGGGTGCCCTGACTCTGATGGCCGGGTGGCCCCCGCGAGGGTTCCGGTGCCCGCTGGTGCGGGCATCATCACGCAGAGGCATCGCCACGGATCAGTGCCGCGAGGTCGAGAGCCTCGCGGCGAATGCCCGCAGGTGCCAGCATCGGCTCGGCACGTTCAATCGCCAGGGTCAGCGCCAGCCGTTCCAGGGCCAGAATGTGGATAAGGCGCACCGGTGAGGTGCCGGTTTCGATATCGGCGATCGATCGACGGCCCATGCCAAGGCGTTCGCCGAACTGAGCCTGAGTGAGGCCCAGCGCCTTGCGGGCTTTGGCCAGGTCTTCACCGGTCATCATCCTGGCGGGACTCCGCAGCCAAGGTGTCGGGCATCACTGTTCAATATCCACCGATTGAGTAGATACCGCATGCCTCCCGAAAAGTAAGCGCGATTCCCGTGCGCCTGACGATAACACCCGCGCCGGGACGTGATCGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACAGGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.40,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 9990-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000075.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence075, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9989 32 100.0 34 ................................ TGACACGCCCGCCCGCCCGGGAACCCGGGCTGAC 9923 32 100.0 35 ................................ TACAGCGATAACGGCCCGGGCTTCACCAACCTGCA 9856 32 100.0 33 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGG 9791 32 100.0 33 ................................ ATCCCAATCGACCATGCCGGCTGGCGCCGTGTA 9726 32 100.0 33 ................................ GGCGGGGGCTCCGGCGGCGGTCTGTTCTCGGGC 9661 32 100.0 33 ................................ GCCGCGCCGCGCGTGACGAGGTGGCGCGGGCTG 9596 32 100.0 33 ................................ TTGGACGTCGGCGCGCGCGACGGCATCCAGTGG 9531 32 100.0 36 ................................ GGCAACAACGAGCCGAGCAATTATGCCGCCTGGGCA 9463 32 100.0 33 ................................ GTCTAGATAAACCAATTTCAGGCCGGGCGTTTG 9398 32 100.0 33 ................................ GTCGAGACGGCCGGCCGTCTCGGCCAGGACACC 9333 32 100.0 33 ................................ GGCCGAGACATCGATCTCGCCCGCACCGGCGAT 9268 32 100.0 33 ................................ CACCGGCCGGCCTGGTAGGCCTGGCCGAGATTG 9203 32 100.0 35 ................................ CGGTCCGGGTGGCGGCGGAGATCTCATCCTCACCA 9136 32 100.0 33 ................................ GCTCAGTCGGTCTATAAGTTCCTGCGTTACGAT 9071 32 100.0 33 ................................ CGACAGCCCTGCCGGCAGCAGCCGGTCGGCGCC 9006 32 100.0 34 ................................ CTGAGCTCAATGACGAAAGGCGTCATCCACTGAT 8940 32 100.0 34 ................................ CCGGAACGCTACGATGCCGCCGGCTGTCGGCGAC 8874 32 100.0 33 ................................ CGGGGCGCGGAACCCCGGTCGCCCGCGTCATGA 8809 32 100.0 34 ................................ CGGGGGGCATGTGGCCTCCACCTCTGGGCGCCCC 8743 32 100.0 33 ................................ GGGCCTCGGCGGACGGTAGGCAGACCCTGATGG 8678 32 100.0 35 ................................ ATCGACCTCGACGATGAAGGGCTGTCACTCGGAGA 8611 32 100.0 34 ................................ ATCCAGTACTGTCGACCTACGCCCGCGGATATAG 8545 32 100.0 35 ................................ GTCGCGCTCAGAGAGCTTGTCGATGTCATCCGCTG 8478 32 100.0 34 ................................ AGGACAGCCTTGAGGCCGTCGTGCCCCGAGAGCA 8412 32 100.0 33 ................................ CGGGATTTTGCCGGCGACATCGTCGGCATCATC 8347 32 100.0 34 ................................ CCATCGTTGGCGTCGAGGGAGGCTTTCTGTTCCA 8281 32 100.0 33 ................................ GGCAAGGAACATTTCCGCCTGCAGTCGACGCGA 8216 32 100.0 35 ................................ GTGCCTGCCTTCGGGCAGTGGTATGCCGACGGCAA 8149 32 100.0 33 ................................ CTGCGTATTGCGCGAACATACTCCCGCGCATTA 8084 32 100.0 33 ................................ GACTTGGGGCGCGTCGTGGTTGGCCGTGCGGTC 8019 32 100.0 33 ................................ TCGGGCCATGAGAGAGGCCAGACACGCCAGAAA 7954 32 100.0 32 ................................ CATCTCGCGATCCAGGCGTGGCGCGCCTGCAA 7890 32 100.0 34 ................................ TTTGCTGCGGCATAGAGTGGGTTTAACGGCGCCC 7824 32 100.0 32 ................................ AAGCACGACCTTGAGGCGGCGTTGGCGGGGTG 7760 32 100.0 33 ................................ CCCGCACTGGACCACCCGGCCCCGATCCCGGTG 7695 32 100.0 33 ................................ CGACCGGTGGTCAGTGGTGTCGCAACATCGGTG 7630 32 100.0 35 ................................ GCCGTTCCTATCTGCGGCGCACCGGCCTGTCAGGG 7563 32 100.0 33 ................................ GGGCTGTCGATCGCGGAGACCCGCGGGCCGCTG 7498 32 100.0 33 ................................ GCGTATCTCATCATAGAGTGCCACCCCTTGGGC 7433 32 100.0 33 ................................ CACCAACCTCTGGGCACTGAAGTATCGCGGCAT 7368 32 100.0 34 ................................ GAGCCTTTGCGTGCGCGTCTTGAGTTCGGCGACC 7302 32 100.0 33 ................................ GTGATCCCGCCCGGATCGGCCGGGTCGTTGGCG 7237 32 100.0 34 ................................ CAGCCCGGATCATCTCCGCAATCTCTCGCGGGTC 7171 32 100.0 35 ................................ CCGCTCGATCCAGGCCTTCAGGGCCTCGATCGCCG 7104 32 100.0 34 ................................ TGTCATGTCCGGAGCCCGAGTGGCGGGGGCTGGT 7038 32 100.0 33 ................................ TACATGGGCCCGTCCCTTGAGATGACAAAAGAG 6973 32 100.0 33 ................................ CGGCCGGTGGTGGCGGCGGTGACGGCGCGGCCG 6908 32 100.0 33 ................................ ATCGGCATAGACCGCAAGGGCCCCCGCGATCAC 6843 32 100.0 33 ................................ GCGTCTCCCTCTGCCGGTTTGGTCCGGCTGGCC 6778 32 100.0 34 ................................ GGGTTCACCGCGACCGCCCCGACCGAGGGCGGCG 6712 32 100.0 33 ................................ CGGCTTGCCGATCGTTCGGGCCTGCTGCGCTTG 6647 32 100.0 35 ................................ CGCGACCGCCGGCGCGGCTATGGGCGATCAGGCGC 6580 32 100.0 35 ................................ CATCCAACACCCGCAACCCCACCCGTTGGGGGGAT 6513 32 100.0 32 ................................ CAGGCCGACTTTGACGCTCTGGTCGCGCGCCA 6449 32 100.0 34 ................................ ATCCCAATCCACCATGCCGGCCGGGGCTGTGTAC 6383 32 100.0 33 ................................ TCGGCCGTTGCCGCCGCCTCACGCCGTGCCCGT 6318 32 100.0 35 ................................ CAGGCGGCCTTGGTCCAGCTCGGCCAGGGGCTGGG 6251 32 100.0 35 ................................ GAGCGGCGCGTCAATGCGGACGGCGCGACCGACCC 6184 32 100.0 34 ................................ CGGCGCCACCCGGGCCGTCGCCGATCACCATGTC 6118 32 100.0 35 ................................ GCTCCATACGCCGCCCTGATGCCCACTACAGGGCC 6051 32 100.0 35 ................................ GGTCGAGGTGCGGGACGCTCTGGCGACCAGCCCGG 5984 32 100.0 34 ................................ GGCCACCATCAGGGTCTGCCTACCGTCCGCCGAG 5918 32 100.0 35 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGGGA 5851 32 100.0 32 ................................ CATGGCCGCCGTGCGGGCTGCGACGGCGGCTG 5787 32 100.0 34 ................................ CATTTGAGGGTGACATTTGGGCGATAGCCACAGG 5721 32 100.0 33 ................................ GGCGGCAAGGTCAATGCCAGCATTGGCGAAGCT 5656 32 100.0 34 ................................ ATCTGTCACGCTCAGCGACAGCAGCCGGTCGGCG 5590 32 100.0 35 ................................ ACGGGTTCTATCTGCCCCATCACCAGCAGGGCGGC 5523 32 100.0 34 ................................ CTCGCGATGACAGAGCATAATGCTCTGCGATCGG 5457 32 100.0 34 ................................ AAGCTCCGCAACCCTGAACCCCAGATCCCCGATC 5391 32 100.0 32 ................................ GGACCATCAAGGCGGCCTGCGACGCGGTGCCG 5327 32 100.0 33 ................................ ATTCGCCGCGCCATCAGGCGGATGACGGATCGG 5262 32 100.0 34 ................................ AACTCGCCGATGCCCGAGACCGGACGCTGCGGGA 5196 32 100.0 34 ................................ CTCTCTGTGCGCCGGACGGCGGACATCATCTATG 5130 32 100.0 33 ................................ GGCCGCACCAAGCCGCACCGCCAGCGCTTCACG 5065 32 100.0 34 ................................ CGTCGCTGATCAGGCGGCGCGGCTCGGCAGCGCC 4999 32 100.0 35 ................................ CGGGATCACCGGCCGCGGCGCCCACGGCCCCGGAC 4932 32 100.0 34 ................................ TGCTCAGTTGGGGTGTCATCAGCCCAAGTGGGCC 4866 32 100.0 35 ................................ AGCCATGGCCCGTCGGGCCAGAACCCAGGCTTGCC 4799 32 100.0 34 ................................ CAGGGCCTGCAGCCCGTGAAGGTGAACACCACAC 4733 32 100.0 33 ................................ TACTTAAATAGCATTGGATATTGGTCGCCTCTA 4668 32 100.0 36 ................................ GCATACGCCCTCGGGGAGAATCGCACATGAGGAGGT 4600 32 100.0 35 ................................ GCAGTTGGCGGGAGTATGGTGACGCTTGATCGCTC 4533 32 100.0 33 ................................ TCCTCCTTGTCACTGTGAAGATCCCAATTTCAG 4468 32 100.0 33 ................................ CAGCCATCGGCGAGGATGCCGTGATGCTGATGT 4403 32 100.0 33 ................................ TGCTCACCAACCTCGATAGGGCAGGGGGGTGGG 4338 32 100.0 35 ................................ GTGGTGAGAGAGTATGTCGTCGGGCAGGTCCAGGC 4271 32 100.0 33 ................................ GCGGAAGGCGCACGAAACTCGAACGCGCCCGAG 4206 32 100.0 33 ................................ AGATAGGCGCGGACCTCGTTGTCGGCCTTCAGC 4141 32 100.0 34 ................................ TCCCGACCCAGATCATCGAGCGCCACACCGCGCA 4075 32 100.0 33 ................................ CGTGGCCCTGATCCTCAATGCGATCAGGGCCAG 4010 32 100.0 34 ................................ TATGGACGATCCCGCGACATTCGGCCCGGTCGTC 3944 32 100.0 33 ................................ ACCCCGTCCTGAACCAAGAACGCACCAAATCTC 3879 32 100.0 33 ................................ GGGAGGTCAAGGGGCGGGTGGCCCTGTCGTCGG 3814 32 100.0 33 ................................ TTGATAGCCGTCCCGCTGCGGTGCATCCGGCAA 3749 32 100.0 34 ................................ TCCACGGAGTGCGCCACTACCCAGCCCCTGGCCG 3683 32 100.0 33 ................................ CGCTTCCACGTCCACCGCCGGCCGCGGCGGTGC 3618 32 100.0 34 ................................ GATTTCGAAGACGGAAATGGCCCTATACCGTCAG 3552 32 100.0 34 ................................ CGATCCGTCCGCGAGCGATGGCACGGAAGCCGTG 3486 32 100.0 34 ................................ ATCGCGTCATGCTGGATGGACAGCGATTGGCGCG 3420 32 100.0 34 ................................ AATCGGTCAAAGGCCGCATCGAACACGTCACCGA 3354 32 100.0 34 ................................ TCGCGACCCCGGCCGTCCAGGCGCCGGCCGGCGG 3288 32 100.0 33 ................................ GTGTACCAGAAGAGGAGATTGAGAAGGTGACGC 3223 32 100.0 33 ................................ TGTACTCAACGGCCCCAGATGACGTCTCTGCAA 3158 32 100.0 33 ................................ CGCTGGCCCGCGCCAATCAAGCCGGCGCGGCAG 3093 32 100.0 33 ................................ TCGATGAGCACTGAGATCCGGCGGCGCCTGAGT 3028 32 100.0 32 ................................ CTTCAGGGGGCGGCGGGTCAAGGCGGGGGTGA 2964 32 100.0 32 ................................ GACCGGCGGTGGCGGCGGCCGGCGCGCAGATG 2900 32 100.0 33 ................................ TCCATAAGTCGGAAAATACGCTGAAGAAGGATG 2835 32 100.0 33 ................................ CCGGTCGCGTCCTTGTCGATGCGGACCCAGGTG 2770 32 100.0 33 ................................ TGGACGCGGCGGCAGCGCTGTACGACGGCGGCA 2705 32 100.0 34 ................................ GCCACTCCCACCCCGGCCGAGCGCGGCGGGATGG 2639 32 100.0 33 ................................ CCTCCATTGCGCGAGTAACCTGAGTGATCGACG 2574 32 100.0 33 ................................ AGGCCGTACCGGGGATAGGTGACGCGGATCGTC 2509 32 100.0 33 ................................ TGTGACCGTCCACACCGGCGCTGTGGTGGCGCC 2444 32 100.0 33 ................................ CCCGCCGCCAGCAGGCCGACGCGGTCGTCGTCA 2379 32 100.0 33 ................................ GCGACGCCACGGCGGCGGCCTCTGTCGCCGCCG 2314 32 100.0 34 ................................ GCGGTGCTCTCAAACGCCACCTTGCGCTGGGTCG 2248 32 100.0 34 ................................ CCCTATGGGTGGAACTGGGATGCGGCTGAGCCGT 2182 32 100.0 33 ................................ CCCGAACGATGGCCCCGGCGCCGACGCCGGGTC 2117 32 100.0 33 ................................ TCGAAAGCGCCTGCGAGGCTGTCCTGAATCTCC 2052 32 100.0 33 ................................ CGCGTAGAGCGGGTGGAGAGCTGGCCACGTGGC 1987 32 100.0 33 ................................ CCGATGCCGAGCACGTTGCCGTGCTCGCGGGCA 1922 32 100.0 33 ................................ CCGATGCCGAGCACGTTGCCGTGCTCGCGGGCA 1857 32 100.0 34 ................................ CGGGTCAGCGCCCGGAAACGGTTGATACTCTCGT 1791 32 100.0 33 ................................ CAATTCGAGTGAGCAAAGCATCAGGGCAACTCC 1726 32 100.0 33 ................................ CAACGAGCGCAGCAGGCCATCCGTGATGCCATC 1661 32 100.0 34 ................................ TGATCGGCGGCATGGACCGCCTGACAGGCCGTAT 1595 32 100.0 32 ................................ CCGATCAAGATCACCGGCGCACCGGTCTTGTT 1531 32 100.0 32 ................................ CGGCAGCAGGCGCGGTGCGCGCGGGATTTCCC 1467 32 100.0 33 ................................ CGGATAACACGGGCGCGGTCAGCGCTCTAACGG 1402 32 100.0 35 ................................ GCGTGGGCGCGGGCAGCCGGTCAGGCCGACGGATG 1335 32 100.0 32 ................................ AGACGACAGCGACCCAGGGCACTGGTGACCTT 1271 32 100.0 33 ................................ CGCCACACGGTTGAACGGTGGGGGGTGCCGGCC 1206 32 100.0 34 ................................ CCGCGCCTGCTGGATCAGGTAATCCAGTTGTGCC 1140 32 100.0 35 ................................ CCGACAGTATCGCGCAGCCGTCGTGGCGCCGCCGT 1073 32 100.0 34 ................................ AAATGCACCATGCATTTGTTGTAATGCCGGAAAT 1007 32 100.0 33 ................................ AGCACATGGACAACAGCCTACGTGAGAAACTCC 942 32 100.0 33 ................................ GCGGTCATCGCCACCGCCGTCGACGGTTTTGAA 877 32 100.0 35 ................................ GGCCACCATCAGGGTCTGCCTACCGTCCGCCGAGG 810 32 100.0 33 ................................ AGATCATCACATGACATTACTTACAAAAAAGAT 745 32 100.0 34 ................................ GAAAGGGTCTCCAATGCCGCTTTCGAGATAGCGG 679 32 100.0 32 ................................ GGATCGGCGGCCTGAAGCTCGGCGTCGGTCAC 615 32 100.0 34 ................................ CGCCCGGGTCGGGGCGGCCGAAGGGCGGATCGGC 549 32 100.0 32 ................................ GCCCGCCGCAGCCTGATCACCGGCATCGACAT 485 32 100.0 32 ................................ TCGATCCGCTGTCGCCGATGCCGCACGATGTC 421 32 100.0 32 ................................ TGGGCCGGGCCGGACAGGGCGCCGGCGATCTG 357 32 100.0 32 ................................ CCAGCCGTCTTTGCACCCATTTCGCGTGCGAT 293 32 100.0 33 ................................ CGTGTTGATCAACGTGGCAGTCAATGCCGATAG 228 32 100.0 34 ................................ GCCCGCCAGCAGCAGCGCGAGCACTTCACGCCCC 162 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 151 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TATCAGGCGATCAAGGCCGGAACCCTCGACATGCTCGACATCGGCGTCGATGCCGACGTGACGCCGATCACCATCGCCTATCAACGCGGCCCCGCCCCCTCGGCACGGCTGCGGGCACTGATCGACCACCTGAAACACGCCTTCGGCCACCCGCCATATTGGGATGACGGCCTGATCATTCCGGGGCGGGTATCCAACACCTGATCGCCCCCCCAGGCCCGGCCGGGATCAGCCCGTGGCCCGTCACCACCATGCCCCTGTCAGATATCGGCCCCGCCGGCCGACCCGCTGGCCCGCCCGGCCCCGGTGGGGAGACGGCCGTTCCGCGAACCCCAAGCACACACAAAAACCCCGGGAGGTTCGCGGAAGGAATCGCGAAGCGATTTCAAAGGCTTAAATTTTTGAAAGATGTGTCATGCATACGATGGAATGAGTCGGCGGGGAGGTTCGCGGAAATCGGCTTTTTTGGGCAGTGAAATCAAGGTATTACAGGGGGGTGA # Right flank : CCGCCTCGGACAACACGGCCGCTTCGGCTGCCCCGTCGCTCCCCGTGCGGAGGCTGTCGCGCAATGAGCGCGGCGGGCTGGTTTAGAGCGTCACCGTCGCCTGGGACGGCGTGAGGCGGCCCGTCCTCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38203-38890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000010.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38203 32 90.6 32 TGA............................. GGGATGTCGCACGGGGCGCCATCACCCTGCCC 38267 32 93.8 31 A.A............................. CTCGTCCCGCAACTCTGCGATGCGCCGCCGC 38330 32 90.6 35 AGA............................. AATGAATGCCGGTGAGCCCTCGTGGTAGACCGGAT 38397 32 100.0 33 ................................ GCCGCGACCGATGTCGACGGGCTGGTGGTGATG 38462 32 100.0 35 ................................ CGTGAACTTCGGCCGGTCGCCATCGGCCGGCAATA 38529 32 100.0 33 ................................ ATGGCCCTCGCGCCGGCCCTGAGGCAGCAGCTC 38594 32 100.0 34 ................................ CGGGTGGCTGGGCCGGCGGTGCCGGACTTGGCTA 38660 32 100.0 36 ................................ TTGTTGCCAAATTACCGAAAAAAGGCTGATTAAACA 38728 32 100.0 33 ................................ CCATGCGGGAACGTTTGAGCCACGCATTGACAG 38793 32 100.0 34 ................................ GCAGCGCTGGTCGCCGAGGTCGGCGATGTCTCGC 38859 32 75.0 0 ........A.A..G..A......GC..A..G. | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 95.5 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TGACGTCCGCACCGACACGCCCGCCGGCCGCCGCCGCCTGCGCCGCGTGGCCCGCGCCTGCCAGGATTTCGGCCAGCGGGTGCAGTATTCGGTGTTCGAATGCGATGTCGACCCGGCCCAATGGGCCATGCTCCGCGCCCGCCTGCTCTCAGAAATCGACCCCGACCACGACAGCCTGCGCTTCTATCGCCTTGGCGCCAACTGGCGCCCCAAGGTGGAACATGTCGGCGCGAAACCCGCCACCGATTTCGACGCGCCGCTGATCATCTGACCCCACACCACAACGCCCCCACGCCCCGGCTTTGCGCCCCTGCGGCCCGGCTTTGCGCGAACCCCAAGCACACACAAAAACCCCGGGAGGTTCGCGGAGCGGATTTCCCTTTGATGTCAGTCACTTGAAAATTTTGATGTCATGACACACATGCTATGGTCTGACTCTCGCAGGGGGTTCGCGGAAATCGGCTTTTTCCGTTAGCAGAATCAAGCTATTACAGGGGGGG # Right flank : CCTCCTGCGCCGGTGCCGACGCACCGGCCGCACGGTCGCTCCCCAAGCGGACGCAATGCATGCCCTGACGATGGAGCGCCAGAGCCAGTAGACAGCCGGCTTTAACCGCGCCGGGGTTTTTCGTCCCGTCTGGCACTTCAACCCCTTACATACGGTTGCATTTTCCAGCCAGGATCAGCCCGCAGTCTGTTCCCGCCGCGCCAATGTCAGATAGCGCGTCAGGTTGCGCGCTCCGGCGGCGGCGGCTTTGAGATAGCGGTTGCGGTCATCGGGCGTCAGGTCGGGGCTGTCGGCGATCGCGATGTTGAGGCCGACCAGATAGGATTGAAACGCGGCGCCGGCGGTGGAGGTCGCTGTCAGGGTCAGTGCCTGGGCGGCTATCGCGTTGCGCCATGTGTCGAGGGCGATACAGATGCCGGGCTCGCCCTCTGGAGCCGACCAATGCTCAAGAACCTGATCGTCGAGAATGGCCCAATCCGCCGCCAGGGTGGCAACGGGGC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.42,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15102-10858 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000095.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 15101 32 100.0 34 ................................ GGCCGTCGCCGTCTCGACACTGGCGAGTTGCTGG 15035 32 100.0 34 ................................ GCGCTCAATCCACGCGCCTGTCGCCGCATCCCAA 14969 32 100.0 34 ................................ CCCGTTGGGATAGGCGTCGTCATACACGCCCGAC 14903 32 100.0 33 ................................ AAATTGCAATGACCGGAATCAATTCCATGGGCG 14838 32 100.0 32 ................................ CAGTGTGAGGTTGTGGCGCTGCTCGACATCGC 14774 32 100.0 35 ................................ CAATTCAAGAGTTCGGCGAAGACCTACTTTGTCGA 14707 32 100.0 35 ................................ TGGATCGCGCCACCCAGACGCGGTTGACCCCGCCA 14640 32 100.0 35 ................................ GAGTATCAGTCCGGTCGTGCGGGTCATGTCCCGAG 14573 32 100.0 33 ................................ AGGGATTGATTTTGAAGGTCTCTCTGGCAGAAG 14508 32 100.0 34 ................................ CAGTGGACCGGTGCCGGGTGGCACGGGATCACTG 14442 32 100.0 33 ................................ CCGGACTTGGCTACCTTGATCCGCCAGACGGCG 14377 32 100.0 34 ................................ AAGCGTCGTCAAATTGAAGCGGCTCGGCTTGTCC 14311 32 100.0 35 ................................ GCTAGACGCGGTCAACCGCGCGGCCAACCTGGGAC 14244 32 100.0 33 ................................ ATGCGTCACCACCCTCTGCACCCTCTGCCGGTT 14179 32 100.0 34 ................................ GACCGATGCTCGTCAGCAGCAGGCGCTGAGCAGC 14113 32 100.0 34 ................................ GGGCGGCCGCCGCCTCAGTCGCGGTGGTGCCCGG 14047 32 100.0 35 ................................ AGACACTCCCCCGCCGCCGCAGGTTGGCCACAGCG 13980 32 100.0 34 ................................ TGGCTGAGACGCTTCTGGACCCTGACGAGATCTG 13914 32 100.0 34 ................................ GCGGCAGGCGAGCCGGATATCGCACCGGCGGATG 13848 32 100.0 34 ................................ ACCGCAGCGGCTCCGGCAGAGGGGGGCGAAACTG 13782 32 100.0 34 ................................ GGCGACCTCCCGGGGGTCAGCCGCCTCGGCAAAC 13716 32 100.0 33 ................................ GCGCCACCCCCGGCGCTTCACGGTTTCGACATC 13651 32 100.0 34 ................................ CGGATGGTCCGGCCATCTGGCCCACCCACCCAAT 13585 32 100.0 34 ................................ ATCGACACCTGCGCGATGTGGTCTCGGGCCTACG 13519 32 100.0 34 ................................ GGCGCCGAGGTGCTGGATCCGGTCTCGAACCGTC 13453 32 100.0 34 ................................ GACGTGGCGCTCGCCGCGGCTGGCGACGCCGGCA 13387 32 100.0 34 ................................ CATCGCCTTCAGGGCCTCGATCACGGTCGAGGCC 13321 32 100.0 33 ................................ TTGAGGCGCAGCCTCAAGTCGTCAGCTATGGGC 13256 32 100.0 35 ................................ CGTGTACATCCGCACCACTCAGGGGTGGGACTATT 13189 32 100.0 34 ................................ AGGCCATCGAAGCCAACGAGGTCGTTGGCATCGA 13123 32 100.0 34 ................................ AAGAAGCAGACGGCAACAGATGGCACGCCCTGGG 13057 32 100.0 34 ................................ AGATCTGCCGCCGACGGCCCCGTCCGAGCGCTTG 12991 32 100.0 33 ................................ GCCGCCCGGCATGCCTGTTCGGTCGGTGCTGCA 12926 32 100.0 34 ................................ GATTTCGAAGACGGAAATGGTCCTGTACCGGCAG 12860 32 100.0 34 ................................ ACGCGGCACGGCCGGCTCAACGGGCGCCTCGGGC 12794 32 100.0 34 ................................ CCGGAGCTTTCGGACTTGATTCGGGTGACGGCGG 12728 32 100.0 33 ................................ TTCTCCTCCCGCGTCGCGAACATGCGTTCTCTG 12663 32 100.0 33 ................................ CCCCGGGTCTCACCGAGGGACCGGCCAAGCAGG 12598 32 100.0 35 ................................ ACCACCGACGAATGCGGGACAGTTCGGGGCGCGAT 12531 32 100.0 35 ................................ TGATGTCGCGCCTTGGGTGCCCGGTTTCCTCGCCG 12464 32 100.0 33 ................................ GGCGCGCTTTCACCACCGACGAATGCGGGACAG 12399 32 100.0 35 ................................ CGAAATGCAGGCGCTTGAGGCAACGAATGTCTCGG 12332 32 100.0 34 ................................ GGTGCCGGTCGCGGACTGCCACGGCGCCGGGGGC 12266 32 100.0 34 ................................ TGGCCCCGCCGGCCGCGCACCACCGACAGCACGC 12200 32 100.0 35 ................................ CCAGGCGATCATTGCCGCCTCACAGGCGGCCAGAC 12133 32 100.0 33 ................................ CACGGCCTGATTGGCGGCGCCAGTGCGGGCTTG 12068 32 100.0 34 ................................ CTCGGGATTAATCAGGCCCGCAGGGCCTGCAAAC 12002 32 100.0 33 ................................ CTTGCGCGCTCAATGTCCGGTGTTGACGCGCAA 11937 32 100.0 34 ................................ CCTGCTTATCGGGCTTTGCGGCGCCGGATGCAGG 11871 32 100.0 34 ................................ GGTGGTGTGCTGGGCGGCGGATTGCATGCCGGCG 11805 32 100.0 33 ................................ CGCATCCATAAGTCGAGGTGGCGTCTGTCCCAT 11740 32 100.0 32 ................................ ACGCGCGGCCGATCCCCGGCCGATCGTGGCAA 11676 32 100.0 35 ................................ AGGGAAAAAGCCGAACAAGGAGACGGTAAATGAAA 11609 32 100.0 35 ................................ GCCGTCTGATGGAGGTCTAATCATGAGCTACAACG 11542 32 100.0 31 ................................ ATCTCGATCCGGTTTGCCGGGTCCATTGGCC 11479 32 100.0 33 ................................ ATCAAGGGCGGCCGTCGGCAGGCCGTCCGCCGA 11414 32 100.0 33 ................................ CTGGCGACCTGCGCCCGCCCTCGCCCCTACGTT 11349 32 100.0 34 ................................ TTGGTCATTGTCCGGTCCTCAATTGAGCCGGACG 11283 32 100.0 33 ................................ CTCATTCACATCCGTCGTGTAGAGGGTGATGGG 11218 32 100.0 35 ................................ CATCGGTCTCGCTTTCAGTTGTTATGCATATGCAC 11151 32 100.0 33 ................................ AGTGACCATCCACACCGGCGCCGTGGTGGCGCC 11086 32 100.0 33 ................................ TGGAGCGCTGTGTTCAACGGATTAGGCTGTCGG 11021 32 100.0 34 ................................ GTCTGCCACGTCTTCCGCAAGCGCAGTGCCGGAC 10955 31 96.9 35 ..................-............. GCTGTTACGGAGACACTGTTTGGCTTCCGGTAGTT 10889 32 90.6 0 .............T...A..........T... | ========== ====== ====== ====== ================================ =================================== ================== 65 32 99.8 34 GTCGCTCCCTTCGCGGGGGCGTGAATTGAAAC # Left flank : GTGGAAGCCTGTTGAATCACGACAAACTACCGAGCGCCACAGATTCCGATCACCGCGTTAACCTGAACTCGTTGCCCTGGGTTCGCGGAAACCGCCTTTTTTCAGGTGTGATATCAGGGTATTAGTGGGGGGTG # Right flank : CGGCCGAGGTTCTCCATCACCTCTTCGATGCGCGGCGGCTTCCGTCGCGGCGAAGCGACTTGCGCCGGAAACAGACCCGGACCGGCTCCCGCCTCACCGACACCCAGCCAGCCGGCTCGTGGTGAGATAACGGGTCAGGTGGCGCGCGCCATCGGCCGCTTGGGTGAGGTGGCGGCTTCGGTCGGCGGGGGGCGTGTCGGGGTCGTTGGCGATCGCGATTGAGAGACCCACGGCGTAGGCCTGGAAGGCGGCGCCGGCTGCGGAGCGCGGTGTGCGGGCAAGTGCCTGCGCAACGACTGCGTTGCGCAGCACATCCAGCGCCAGGGACAGATCGGCGTCGGGTGCGTCGGCAGCCCAGGTCGCCATGATCTGATCGTCCAGGATTGCCCAATCGGCCGCGAGGGATGACACCGGGCAAGGGGCATCCGATGCCGGGATTGCGGCGTTGCGGGCCGACGTGGCACTGCCGGGTGCCTTACCGGCGGCAATGACATCGGAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGCGGGGGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13698-87 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDZ01000084.1 Tistrella bauzanensis strain CGMCC 1.10188 sequence084, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13697 32 100.0 34 ................................ TTCGATCCGCCTCGGGTGCCGGTGTCATTGAGCG 13631 32 100.0 32 ................................ AGGCCGCCAGCCGGTCCGGCTGGTCGCCGGCC 13567 32 100.0 34 ................................ GTTCAGCGCGACGCCACAGGCGCGGAGGTGGCGC 13501 32 100.0 34 ................................ ACCGGATCGGCCCAGCTCCCGGCGTCGGGCGCCT 13435 32 100.0 33 ................................ GGTCACACGCTTGGGTTCGGCGGGGGCGTGTCG 13370 32 100.0 32 ................................ GGCCTGGTTTGTCGACCAGGCCGGCTTGCGCC 13306 32 100.0 34 ................................ GACGGCGGCAGTCTGACGCTCTATGCCGGCACCC 13240 32 100.0 34 ................................ GTGTCCTGATGGGCGTTGGAGAGGGTGTGCGGTC 13174 32 100.0 34 ................................ AGGGATGTGGCGTGATGGCTGCCGATATCGTCCT 13108 32 100.0 35 ................................ ACCGTGCTGTCGAACGCCGTCTTGCGCTGGGTCGG 13041 32 100.0 33 ................................ CATCGCCCGTTACCGCCTCCATCGCAACGGCGC 12976 32 100.0 33 ................................ CTATGCGGGTGATTGGGGTTCGGCGCGTCTCTA 12911 32 100.0 33 ................................ AGCGCCCTCGTTGGCATCCGCGGCTGTCGCCAA 12846 32 100.0 32 ................................ CTCCGCCGCCGCCGTCTGGGCGGCGGCGGGCT 12782 32 100.0 37 ................................ TGTCATGTCCGGAGCCCGGGTGGCGGGGGCTGGTGGG 12713 32 100.0 36 ................................ CATCACGCCCGCCCACGTCCAGGAAGCGCTGCACGC 12645 32 100.0 32 ................................ CCCCTGCGCAATCTCGCCCAGGCCCGTAAGCT 12581 32 100.0 34 ................................ CGTTACCTCGCCGTCAAAGTTGGTGGTCTTAGTC 12515 32 100.0 33 ................................ GGCATCACCGGTGCCGGCATAAAGCCGTGATTG 12450 32 100.0 33 ................................ GGCATCACCGGTGCCGGCATAAAGCCGTGATTG 12385 32 100.0 34 ................................ ATGATCCGGACGATGGCGGCGCCGAAATCGCTGA 12319 32 100.0 35 ................................ TTCGTGGCGGCATAGAGTGGGTTCAGGGGCGCCCA 12252 32 100.0 33 ................................ GCATCGCGAGCGGCGACACAGACCAGCCGGCCG 12187 32 100.0 33 ................................ CGCCGCCATCATTAGTCGCCTCGAAGCGATCGA 12122 32 100.0 33 ................................ CGCGACCGCCGGCACGTCCGCCGGGGCGGGCGC 12057 32 100.0 33 ................................ ATCGATCAGCACCAGCCCCTGCCGGCCGCGCAG 11992 32 100.0 34 ................................ GATCCGCCGGCCGCCTTACTGGCCGCCGAGGTGA 11926 32 100.0 34 ................................ AGGGTGCTCGGCTGGTTTGCCGGTCGCCGCTGGG 11860 32 100.0 34 ................................ GCGGACTGCCGGGGTTACTTCGGCGGGAGCGAGG 11794 32 100.0 33 ................................ GCTGCCGGGACCGACCACCCGGTCGCGCGGGTG 11729 32 100.0 33 ................................ GGACTTGGTGCGCACATGGGCTGTGGCGATCGC 11664 32 100.0 34 ................................ CGGCGGCCGCGACCGAGGTGACGCTGCACGGGGG 11598 32 100.0 34 ................................ GAGATGGGTGGGCTGTTGATACGCGCGCTGTCGG 11532 32 100.0 33 ................................ TACCCGACCCGGCGCGCCGGCGCCAGGCCGACC 11467 32 100.0 34 ................................ TCTGGGGTAGTGCGGCGGGCGTTTGCGGCCCGCG 11401 32 100.0 33 ................................ CACTCTCTCCGCCAGGATCGAGGGCGCACTCCA 11336 32 100.0 34 ................................ CCTCTATCAGCGGCAGGCGATACCGGCCACCGAT 11270 32 100.0 35 ................................ ACGCTGGCGGGGCAAGGGCTCAACGCCACCAACGT 11203 32 100.0 33 ................................ GGTGGCGTCGGCAGCGCGATCGACAGCTTCGGC 11138 32 100.0 33 ................................ GGGCGGCTGGGGCGGCGGCGCGCCGCTCGACGG 11073 32 100.0 33 ................................ CGGTAATGTCGAATCCTAAAATAAAATTGTGAA 11008 32 100.0 34 ................................ GGTAATACACTGGTTTTAGAATGATATCTATAAT 10942 32 100.0 34 ................................ GGGGGCGGGCGCGGTGGCGGGTGAGCGCGGCGCA 10876 32 100.0 36 ................................ GTGCGCTCATCCATGCGACAACTCCCTTGCTGCCTT 10808 32 100.0 34 ................................ AGGGGCCATCCGGGCCGCCTGATCCAGGTCATCC 10742 32 100.0 33 ................................ GCGATTGAGGCGCTGCCCTCGACCCCGCGGGCC 10677 32 100.0 33 ................................ CATCTCGCGATCCAGGCGTGGCGCGCCTGCAAG 10612 32 100.0 33 ................................ GCGTCACAGATCCACCTGACCAGCGTGCGATTG 10547 32 100.0 34 ................................ AGCACCTCATCCAGGTCATCCTGGAAGGCAGCCT 10481 32 100.0 33 ................................ AGGGGCCATCCGGGCCGCCTGATCCAGGTCATC 10416 32 100.0 34 ................................ GAGCGGCGCGTCAATGCGGACGGCGCGACCGACC 10350 32 100.0 34 ................................ AGGCTCGCCGGCGCGACGACGACAGCGGCACGGG 10284 32 100.0 34 ................................ GACCCGGCGCAGCTTGATGCAGTGCGCGCCCAGA 10218 32 100.0 33 ................................ GGCACCCGTCCGCGGCCACGCGATGCGGCCGTC 10153 32 100.0 34 ................................ AAAGACGCCTTAGCTCAAGGCCTTGATCCCGTGC 10087 32 100.0 34 ................................ ATCGGCATGGACCGCGAGCGCGCCCGCGATCACG 10021 32 100.0 34 ................................ CAGTGCCGCCTTGAGCTTGGGCATAAGGCGTCGA 9955 32 100.0 33 ................................ AGACTGCGGCGACGGCGGAGGAACGCCTCCGCG 9890 32 100.0 34 ................................ CATCGCCCGTTACCGCCTCCATCGCAACGGCGCG 9824 32 100.0 34 ................................ TTCGTCGGTGAGGGCCGCCGCGAGGGCTGCCGAG 9758 32 100.0 34 ................................ CAGCGGGATCGCCCAACTGGCGCGGTAGACCTCG 9692 32 100.0 34 ................................ GCCCTCGACCGATGGCCGCGGTGGCCAGCATCCA 9626 32 100.0 33 ................................ ACCACGAATGTGCCGTCTTCAGCGGTCACGATC 9561 32 100.0 35 ................................ TGCTCAGTTGGGGTGTCATCAGCCCAAGTGGGCCA 9494 32 100.0 34 ................................ GCCGTTGATGATCATCAGAACACCTCAATCCAGA 9428 32 100.0 33 ................................ ATGAATTGCCGCACGGGCTGTCGCGCCGGGTGG 9363 32 100.0 35 ................................ TGCTCACCAACCTCGATAGGGCAGGGGGGTGGGAT 9296 32 100.0 34 ................................ CCGATCCGTCATCCGCCTGATGGCGCGGCGAATA 9230 32 100.0 35 ................................ AATGATCCGACACTATGGTCCGCCCTGACCACGCA 9163 32 100.0 32 ................................ CGGTTGCCGATCGGGACATTCGGGAGGCCCTT 9099 32 100.0 35 ................................ CGGGATCACCGGCCGCGGCGCCCACGGCCCCGGAC 9032 32 100.0 35 ................................ CGGGATCACCGGCCGCGGCGCCCACGGCCCCGGAC 8965 32 100.0 34 ................................ CGTGGCCCTGATCCTCAATGCAATCAGGGCCAGC 8899 32 100.0 33 ................................ CGACGCATCTTGGCGCACCTGTCGGGGCGCCCA 8834 32 100.0 34 ................................ ATTTATAACCTTGGAACTTGAGGAGTTGGCGGGC 8768 32 100.0 33 ................................ CGGTGATGCTCCTGCTCGACCACGATGAAGCGC 8703 32 100.0 33 ................................ GCACTCTTCGCAGTTGGCGGGAGTATGGTGACG 8638 32 100.0 32 ................................ CAGTTGGCGGGAGTATGGTGACGCTTGATCGC 8574 32 100.0 34 ................................ TGGCCTATGGGCTGCCAGTGATTGTATGGAAGTC 8508 32 100.0 35 ................................ CTCGGATGGCCCTGGATTTGACCGATGCGCAGCCA 8441 32 100.0 33 ................................ CGCGCCCAGAAGCGCTTGAGCTTAACCGCTACG 8376 32 100.0 33 ................................ TGCCCACGGGTGCGGCCTTGTTGCAGGCGAGTG 8311 32 100.0 33 ................................ GCTGATCCTCTGGCCGGTGCGATCGCAATTGTC 8246 32 100.0 33 ................................ GTGGTCTCAATGTGGGAGCCGGCACGCATCATT 8181 32 100.0 33 ................................ TCGACCTGCGGCACCGGTCGCGGATCGACCAGC 8116 32 100.0 34 ................................ CGCCGCCATCAGCATGTCATTGAAATCCGTGCCC 8050 32 100.0 34 ................................ GCCGAGGGCATCGACGTACCAGCCCTGGACGCCG 7984 32 100.0 33 ................................ TCCAGGTCGGCGACGACCTGGTCGAGATCGTCG 7919 32 100.0 37 ................................ CAGCCATAAGTGAAGGCACCCGAATTCGGATCGTCGA 7850 32 100.0 33 ................................ ATAAGCGGCGGCCGCCTGCGCGGCCGCTGCCTG 7785 32 100.0 34 ................................ CTTTTGATTTGTGTGATCCTATCGAATGACACCA 7719 32 100.0 33 ................................ TGGGAGCGGGTCGACGCCAGCACCGCCTGCCAT 7654 32 100.0 33 ................................ CCGACTTGGCGCGAAGAACAGCGCGCCGGTATC 7589 32 100.0 34 ................................ ACAGGGCCGTCATCAGGAATACCGTTCGGGTATC 7523 32 100.0 33 ................................ CCGATGCCGAGCACGTTGCCGTGCTCGCGGGCA 7458 32 100.0 33 ................................ CCGATGCCGAGCACGTTGCCGTGCTCGCGGGCA 7393 32 100.0 32 ................................ TGGACTCGGGGGGCTGGGCGCCGGGGTGGCGC 7329 32 100.0 34 ................................ GCGCCAAATCCGCCCCTGCCCACATGCGTCGGGG 7263 32 100.0 33 ................................ ACACCGGTCCCCGTGCCCGATGGCCGGGTGATT 7198 32 100.0 32 ................................ AGGGTGCGCGTCGGGAAGAAGAAGCTGCCGAA 7134 32 100.0 33 ................................ GTATGCCCTGAAAGAGACCCCGCTGTCCCGCTC 7069 32 100.0 34 ................................ CAGGACGCTCCTGCCCAAGATCGGCATCGATCGT 7003 32 100.0 34 ................................ CCGGGGCTGCCGTCTGCGCGGTCCAGCCCCAGGT 6937 32 100.0 34 ................................ CTGGAGCACTTGGCGCGCGCCGTCGGGGCCCCCG 6871 32 100.0 34 ................................ AGGGCGCGCTGGCCGGTTGGACGCCCGACCCCAC 6805 32 100.0 34 ................................ CGTCTTCGAAATCGAACAATTGAGATTCGGTCAT 6739 32 100.0 34 ................................ CACGACCGGCCGGTCACCTGCCAAACGCCATCTG 6673 32 100.0 34 ................................ ACGGCAGCGGATCTGGCAGAGATCGCGCGCCAAT 6607 32 100.0 35 ................................ CCGGACTTGGCTACCTTGATCCGCCAGACGGCGGC 6540 32 100.0 34 ................................ CGGCGCCACCCGGGCCGTCGCCGATCACCATGTC 6474 32 100.0 33 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGG 6409 32 100.0 33 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGG 6344 32 100.0 34 ................................ TATGTGGGTCAGATCGACCAAGCTCAGGCTGGCG 6278 32 100.0 34 ................................ GGGCCTGATGGGCCGTCTCGGCATCACCAAGATG 6212 32 100.0 33 ................................ TCGCTGACCGTCTGCGTGCGATCGACGCCGCCG 6147 32 100.0 33 ................................ AGGGATGTGGCGTGATGGAGGCTATCCTGGGCG 6082 32 100.0 34 ................................ TGGCGCTTCTCATCATACTGGCCGGCATACTGTG 6016 32 100.0 32 ................................ TGGTCGTGATCAAGCGTCAGAATTGGTCCGGA 5952 32 100.0 33 ................................ CGCGCCGTCACGGGTGGCCATCGGCTATGTCGA 5887 32 100.0 34 ................................ AGCAGGGCCGCGGCAGCATGGCGAATGCGCGCGC 5821 32 100.0 33 ................................ GGCGCAACCCGGGGCAAACCACACGGCCGTCAC 5756 32 100.0 34 ................................ GCCGACAACTTCGAACAGGCCTTCGCGGCCGCCC 5690 32 100.0 32 ................................ TCCCGCCCGTGATCGAGCAATGCCACATGGCG 5626 32 100.0 33 ................................ ACGCGACGACATCGCACCGGTCCTTGCCGCAGG 5561 32 100.0 33 ................................ TATTGATGCCTGTGTCTCGCGCGAAAGCGTCGC 5496 32 100.0 33 ................................ CGCGAGGGCCGCGCCGTTACCGGTAGCATCGAT 5431 32 100.0 35 ................................ CGCCCCTGCAGGCGACCGACTGGCTGCCGCCGCCG 5364 32 100.0 32 ................................ CGCTGGTGAGGTTCTGATGCGGTCGCTGCGCG 5300 32 100.0 33 ................................ CGCGGTACTGGTTGTCGTTGGCGAGGCTTAGTT 5235 32 100.0 36 ................................ ATTCTTGTGCGCAAGATGTAGCGCACCTGATCGATG 5167 32 100.0 34 ................................ CTGAGCATCTGCGATGCCTGGATCGAGCGCTACG 5101 32 100.0 35 ................................ ACCGTCGCCCGTCACGGTCGAGCGGCGCGCCGCCG 5034 32 100.0 34 ................................ GATCACGCGTTGGCGCCGCTGCACGGCACGCGGG 4968 32 100.0 32 ................................ GACTCGATCACGACAGCGATGCTCGCTGCCTA 4904 32 100.0 35 ................................ GAAAGAGGTCAGGCCGATGGCGACCCCGTGCAGCG 4837 32 100.0 33 ................................ TTGGGCGCGCAGCCGCCGTCGATTAAGGGGTTG 4772 32 100.0 34 ................................ AGCGCGGGTGACGGCGTGGCCGGTGCGGCTGGCT 4706 32 100.0 33 ................................ AGTGGATCATCGACTACAACCTGCCTGGGGCGT 4641 32 100.0 36 ................................ CTGCCGCCGATCGACGACGGCGCCGGCGGCACCCTG 4573 32 100.0 33 ................................ CGGATGCCTTGCACACGAGTTAGCCGCTCGTCG 4508 32 100.0 34 ................................ ACAATTTTCTTGCCTCTCATCCAATGTGGAGCTA 4442 32 100.0 35 ................................ GTTGAAAACACAGGCATTGCCTAAAACATAGCCAT 4375 32 100.0 34 ................................ GCCGTTGATGATCATCAGAACACCTCAATCCAGA 4309 32 100.0 34 ................................ ACGCTGCCCTCAATATCCGCGAAGAGCTGGCGCG 4243 32 100.0 33 ................................ TTCGGTCTTGATGGTCAATTTCGGGAGCGTGAG 4178 32 100.0 33 ................................ CTATGCGGGTGATTGGGGTTCGGCGCGTCTCTA 4113 32 100.0 34 ................................ TTTCCAGCGTCCGCGCATCTCGGCGACGATGGTA 4047 32 100.0 32 ................................ AGTCCAACCGAACAAGGAGACGATAAATGAAA 3983 32 100.0 33 ................................ CGGCCGTACGAAGTCAAGACCGCAACGCGCGGC 3918 32 100.0 33 ................................ ACGGGAGATCCTCGACGCGATCAGGTCGATTGA 3853 32 100.0 33 ................................ CTCGCGGAGTTCGGGGCGGCACCGGGGCAACCT 3788 32 100.0 34 ................................ AGGGAACTCGCCGGCCGCCTCTGCGGCCGCCGCG 3722 32 100.0 32 ................................ AGTGCCGCCTTGAGCTTGGGCATAAGGCGTCG 3658 32 100.0 33 ................................ TTGGAGGTGTCGCGCATGGACAGCGACTGGCGG 3593 32 100.0 33 ................................ ATCGCCGCGTGCTCAGACTGGGCTGCGGCGGTG 3528 32 100.0 35 ................................ CGGCTATCAGGCGCTGCTGGAATACCTTGACGAGA 3461 32 100.0 33 ................................ TCGGCCAGCAGGGCGTCAAATGCGCCCAGCTGC 3396 32 100.0 34 ................................ TCGACCGCGATCCTGAGATCACCCAGCAATGCAT 3330 32 100.0 33 ................................ AGGGCGCGCTGGCCGGTTGGACGCCCGACCCCA 3265 32 100.0 34 ................................ GCATTGGAAAGCGCGAAGTCGACCGGCCGGGCAA 3199 32 100.0 34 ................................ GCCTGCTCGAAGCCCTGCCGGGTCTCGACGTGTG 3133 32 100.0 34 ................................ TGGACGGGCATCACAGCCATGCAGCGGCGATCCT 3067 32 100.0 34 ................................ GCAGACCAACCAGACAGGGAGGGCGAGATGCCCG 3001 32 100.0 33 ................................ GGCGACCTCCCGGGGGTCAGCCGCCTCGGCAAA 2936 32 100.0 33 ................................ TAATTTTCTTGCCTCTCATCCAATGTGGAGCTA 2871 32 100.0 34 ................................ GATTGAAAATGTCCAATTTGGCGCTGTTCATTTT 2805 32 100.0 35 ................................ GATGGAATCACACGAAACAGAAGGAAACACGGAAA 2738 32 100.0 33 ................................ CACACGAAACAAAAGGAAACGTGGAAATGACTC 2673 32 100.0 33 ................................ ATCGGCATGGACCGCGAGCGCGCCCGCGATCAC 2608 32 100.0 34 ................................ AGTCCGTGCGCCGGTGAGCAGCCAGTGAACGTCG 2542 32 100.0 33 ................................ GAAAGAGGTCAGGCCGATGGCGACCCCGTGCAG 2477 32 100.0 33 ................................ CTCATCGACATTGTCGGCATATATGCCCTGGAT 2412 32 100.0 33 ................................ GTCGAGCACGACCAGCCCCTGTCGGCCGCGCAG 2347 32 100.0 34 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGGG 2281 32 100.0 33 ................................ GGTCGGTGCTGCATCCAATGCTCGCCACCGGCT 2216 32 100.0 33 ................................ TTCGGATAGCGTGCCGTATGGCACGCCCGCGAC 2151 32 100.0 33 ................................ ATCTCGATCTGGTCGAGCCAGCGGATTTCGCTG 2086 32 100.0 33 ................................ ATCTCGATCTGGTCGAGCCAGCGGATTTCGCTG 2021 32 100.0 33 ................................ AGCACCATAGGCCGGCCGGCTGCCGGCGCCGAT 1956 32 100.0 33 ................................ GGATACCATACCCCCGGCGCCGGGTTGGCGGGG 1891 32 100.0 33 ................................ TTGATCGGCTGTCGGCGGATCAGCCGCCTGCGG 1826 32 100.0 35 ................................ AATCAGGGCCCAGTCGGCCCAAATCTCGTCGGGAT 1759 32 100.0 33 ................................ ATCCCAATCCACCATGCCGGCCGGGGCTGTGTA 1694 32 100.0 33 ................................ CGGGCGACCCATCCCCGGACCCGGCTGGTGTTG 1629 32 100.0 33 ................................ CGGCATAAAGCCGTGATTGCAGGGGCTTGTCCG 1564 32 100.0 33 ................................ CGCCACATCGATCCGCCCGCCGGCGGCATCAAG 1499 32 100.0 34 ................................ GGGTAGTGGGTGGCCGTCCAGGGATCATCCCTGG 1433 32 100.0 34 ................................ ATTGACGCATGCGGCGACTGGGCCGCAGCCGTCA 1367 32 100.0 34 ................................ CGCCGAGGTGATGGCGGCTTCGGCCGCGCCGATC 1301 32 96.9 35 ......................A......... AAGGGCCTCGCGCATGTCCCGATCGGCAGCCGCCG 1234 32 100.0 33 ................................ GGCCCTCTCGGGGTTGGCAGCGGCCGAGAGTGC 1169 32 100.0 36 ................................ CAGCGGCCTCCGATGGCGGCGATGGCGCGGCCGCGG 1101 32 100.0 33 ................................ TGTTTCACGTGGAACCTTACGAACGACGCGACT 1036 32 100.0 34 ................................ TGCCGTGCCAATCGCGTCATCGCGATCTGACGTG 970 32 100.0 33 ................................ GGCAACAACGAGCCGAGCAATTACGCCGCGTGG 905 32 100.0 36 ................................ GGCGCCACGTGGCCAGCTCTCCACCCGCTCTACGCG 837 32 100.0 35 ................................ TGATCACGGCGGCCGAGGTCTATTACGCCGGTCAG 770 32 100.0 33 ................................ CATCGCCCGTTACCGCCTCCATCGCAACGGCGC 705 32 100.0 34 ................................ GCGGGGGCGATCGGTAAGGCCGGCGAGGAGATTC 639 32 100.0 33 ................................ CGCTCTGATCCCTGACGATGCGGCGGCGCGCGC 574 32 100.0 33 ................................ AAGCCCTCCACGGCCGCGCCCGCTCCACGCACG 509 32 100.0 32 ................................ TATGCGCTGCCGTCGAAGCCGACGGCAACGGA 445 32 100.0 33 ................................ CGCGGTACTGGTTGTCGTTGGCGAGGCTCAGTT 380 32 100.0 33 ................................ GAAATAGGCCCGCGTGACCGCCGCCCGGATCGG 315 32 100.0 33 ................................ GGCATCACCGGTGCCGGCATAAAGCCGTGATTG 250 32 100.0 35 ................................ CAGCCGTAGACGAATGCACCGCTGTTGTCGTCCCC 183 32 100.0 33 ................................ AGCGCGGAGGTGATCGGCCCGAAGCGCCGGCAG 118 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 208 32 100.0 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TGTGCGGCCTCGCCACCCGCTACGACCAGGAAGCCCCGACCGTGATGGTCCAGGCGGAACTGCGCATCGGCTATAAGGCGGAACTGCGCTATCCGGGGCTGGTGATGATCGCGACCGGCGTGCAGCGCATCGGCCGCAGCTCGATCACCATCCCCCAGGCGCTCTACGCCAACGGCGTGCTGATCGCCGACAGCGACAGCGTCTGCGTCGCCATCGACCGCGCCACTCGCCGCCCGGCCCAGGTGCCCGACGACCTCCGCCACGCGCTCAACCGCTTCGCCACCCGCGAACCGGCAGCCTGACCGCGCACCCCGCCCAGGCTTCCGCGAACCCCAAGCACACACAAAAACCCCGGGCGGTTCGCGGAACCAGTTCGCAAGCGATTCCAATGGCTTAATTTTTTGAATGTTTTGTCATGCATACCAGAGAATGAGTCACGAGGGAGGTTCGCGCAAACGCGCTTTTTCAGCCAATGGAATCAGGCTATTAAAGGGGGGTGG # Right flank : CCCTGAAGAGGCTGTTGCCGAATGCCCGCTACCCATGGTTTGACGCCGTCTGCTGACGGCTTGGGAGCTTGGCGGGGGTCTCGCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //