Array 1 33190-32977 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000193.1 Streptomyces sp. SID4915 SID4915.c199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33189 30 96.7 31 .............................C TCCCGCACCGGCGGGTGTGGCTGGTCGGCGA 33128 30 100.0 31 .............................. ACCTCGTCCTCGACGAGCTGTGGCGCGTCCT 33067 30 90.0 31 ...........A...........A.....G AGGCCACTCCGGTCGTCACGAACATCATCGA 33006 30 76.7 0 ..............G......CAA.C.T.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : TGGGCAAGCCCACACCGCGCCCCCGCTACGCCACCGGCAAAGTCCGATACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCTGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTAGGTCGTGTCCTTCCAGAGCCGGCCGTGGATGTCCGTGTGGCAGGCCCGGTCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGACCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGACTCAAGGCGAGGTGGGCATTGGGGCGAATGTCGCTATCGGTGAAGCGTTCAGAAACTGGGGCAGGGGTGCCGTAAGGCCGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACAGGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCCGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGCGGGAGTGCGCGCGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCACGGTGGACGCCGACGACGACCACGCGTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3755-3606 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000002.1 Streptomyces sp. SID4915 SID4915.c2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 3754 27 100.0 34 ........................... CCGCCTCCTCGTGCGGCTTGAGGTCCTTCCAGGT 3693 27 100.0 34 ........................... CCTACGGCCTCTCCGTCGCCCATGTGACGGCGGC 3632 27 96.3 0 ..........................T | ========== ====== ====== ====== =========================== ================================== ================== 3 27 98.8 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GCGATGAGCCTGCTCCGAGCAATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCACAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGCTTTGCCTGTCGCACGGGACTGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGCCGGGCGGCGGGGTGGGTTTGAGGGGGGTGGGATTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGGGGATGGGGTTGGGACTTGGCGGGTGGGGTGGGGGTTGGGTCGGGTGAGGCTGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGAGGGGTTCGTGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGTCACCTTGGAGGGGATATGAGGCATTCGCCCACATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGGGTGAAACCCCAGGTCAGCGAGA # Right flank : CCCTCCCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACTGTGATGACCGTGGCCGGGTGGGAGGCGAAGGCCAGCTCGGTCGCGGCCCGTGCCCCCGCGTCCAGGTGGGCCGTGGGCTCGTCCAGGAGGAGCAGGGGCGTAGGTGTCAGCCAAGCCCGGGCCAAAGCGATGCGGCGGCGTTCGGACGGGGTGAGGTGGTCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGCGGGGCCAGGGTGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGTCGGGGCGTTGGGGGCGAGGTAGGTGAGGTTGTCGTGGAGAGGGGCCTCGAA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000307.1 Streptomyces sp. SID4915 SID4915.c321, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ GGCCCCCACCCAATCAGGGCAGGGGCCTTCAGG 62 28 100.0 33 ............................ GCCCATCGCGCCGCGCTGGCCGCGGGCCCATCC 123 28 100.0 33 ............................ GCCCGATGCGCACGGCCGGTCCCCCTCCGATAC 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : | # Right flank : GCTGGGGCCGCACCGGCGTGGAGGCGATGGCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51947-51737 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000316.1 Streptomyces sp. SID4915 SID4915.c331, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51946 28 100.0 33 ............................ GCGGTAGTCGACGGGGGCGCCCGCGTGGAGGTC C [51931] 51884 28 96.4 33 ............T............... GAGGTGGTCGGCCGCACGCCCGGTACTCATCCG 51823 28 100.0 33 ............................ CACCACCACCGTCATCCGGTGGGTCACGGACAA 51762 26 92.9 0 ...........--............... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GGCTTCTGCCTTCC # Right flank : CGCGCCGTCCGGGACGTCGGCTCCGAGCCAGCCTGTGGTCGTTCGATCGGGGCTCACTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGTTTTTGCCCTCAAGGAGCATGATCGCACGGTCCGAGGCCGGAGCGAGGCCCGAACGGAGGGCTATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCGGGCTGGAGGGTGAGGGTCGCGGTGTCTGCGTCGTACTTGACGGCGGTGACGCGGCCAGCGAGGTCGTCGGCGATGTGCGGCCACCGGCCGAGAACGCCGCCGGCCGCGACCGGGGCCTTCCAGGCGCGGTCGGCGATGAGCTGCTGGATGGCCTCGCCGAAGATGATTGGCTCCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 16105-16255 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000349.1 Streptomyces sp. SID4915 SID4915.c364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16105 29 100.0 32 ............................. CGGGACGCCCCGTGGTGAAGGTGCCCCTCGCC 16166 29 100.0 32 ............................. GAGGACCCGCGACGTACGGTGCGGCTGTTCGT 16227 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 37 GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : CGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTTGCTGGCCGGGCCTCACTTGCCGGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTGGTTCGGCCTCAAGCGCCGGCCGGGCTGGTTCGGCCTCAAGCGCCGGCCGGGCTGATGGGGGTCGTGTTCGGGGCGCGGGCCGTCGGCCTGTGCGGTCACAGATGGCCTCAATCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGACGGTGGCCTCAACTGCCGGTGCGGTTGCTGGGGGTTCTGGGAGAGGATGAGCGAGGCTTCGGGTGTGACAGGGGAGGGTGTTTGCTGACATTCAACCTAATTGCGGCAATCTCGCAAGCTTGCAGAAATGGGCTGCACCGCTAGGCAAAGCCGCAGGTCATCGAGG # Right flank : CATGCGTGCGCAGCTCACCGCCGACTGCGTCGGGTGCTCTCCGCGTCTGCGGGGCCCAGGGAACCCAAGTCCCCGGCCTGCCCAGTGCCACCGGCGCGCGAGGCGCCCCGATTCCGGCGGTGGCAGCCCAGTGTCAGCCCCCTCAGAACGCCAAGATCGTGACCGTGGCCGCGTAGATCACCACCAGTAGGGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000367.1 Streptomyces sp. SID4915 SID4915.c383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57 28 100.0 33 ............................ GAGTTCGCCAACGTGGCAGCGCGTCATCAGAGG 118 28 100.0 33 ............................ GTTCGAGCACGCCCTGCGGGAGTCCGGGAAGTC 179 28 96.4 33 ..............T............. GCTGCTGCTCCGCCTCCAGCCCCTTAACAGCCG 240 28 100.0 33 ............................ CCCTGAGCGGTGGTTGCCGTACCGGTTGGGCTA 301 28 92.9 33 ..T...........T............. CGTCATCACCGGCGCCTACCGGGCGTCGTGGCG 362 28 89.3 0 ..GA.........G.............. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCCCGCACCCCGCGGGGATGCTCCGGGGTGCAGAGGCGGCCCGGTCCGCAGTCGACG # Right flank : CGAGGCGTCGGCTTCCCCCCAGGGGGCCGCAGGAGCTCGCCGCCCTCCTCGAAGAGGCGGAGCGGCAGCAGCCGCTGCGCTCCGTGGCGGACGCGGGCGATCCCGCCTTCATCGCCCCCGGTGACATGCTGCGCTGCCTCGCGGAGGGCGCCGCCGCACCGGCTACCCCGAGCCACGTAACCCCGCCGAGACCACCCGATGCGTTCTGGACTCCCTGGCCCTTGCCCACCGCGAGGCCTTCACCGAGGTCCAGGAGCTCTCCGGCCGGCGGGCGCAGGTCGTCCACGCGTTCGGTGGCGGGGCCCGAAACGCCCTGCTCTGCAGGCTCACCGCTGACGCCTGCGGACTCGCCCGTCGTCGCGGGGCCGGCTGAGGCCGCCGTGGGCAACGCTGTCGTGCAGGCGCGCGGCCGGATCGGTCTCCGAGTCCCTCACGGACCTGCCCGAACTGGTGCGGGCCCCCCAGCCGCTGTGCCGCTGCGAACCGCGTGGGGGCGCCGG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17801-18194 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000367.1 Streptomyces sp. SID4915 SID4915.c383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17801 28 100.0 33 ............................ GTAACGGGGGGCCGTTACCCCGGTCATGGGGCA 17862 28 100.0 33 ............................ GCCGTCGCGGCCGTCGGCGCCTGGCGGCCCCGG 17923 28 100.0 33 ............................ CTGCACCTTGGTGAGGCCGATCGGATCGCGGTT 17984 28 100.0 33 ............................ CTCCCCGACGCCGGGGAGTACTTCACCCCGTCC 18045 28 100.0 33 ............................ TCCGGCGTAGAGCAGCACGCCGCCGGCCGTCGC 18106 28 100.0 33 ............................ CTCCTTCACCTTGGCCTTGAGCACCCGGCGGGC 18167 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCGGCCCCGCCCCCGCGGGGATGCTCC # Left flank : TGCTCCGTCAGCTCCTCGTCGTTCATGCCTGGACAACGCGCGGACGGTGATCCGGACACGATCCGGATCAGTCCGGACCGGCATCCGGATCGTGCCCGGACGCCGGACAGCGCATAAGGCCACCCCGAAGGGCGGCCTTATGGCGTCTGCCGACTGCCGAAAGTCTCAAGCTGGTGCCCCGTATCTGGTGGCAGACGACCATCCCGGGCACCGGCTTTCTACGGGCGACCGCCGTCCCCGTCCCGTTGGCGGGTCCATGCTGGTGGGCCGGTTCGGCACGGTACCAGCAGAACCAACAGCCACCTCAGTGAGATGACCAGGCACGCACCGTCCGGGGGTTCGGAAGGTGTGGCACCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGCTCGCGTACGTCGCGATCTCTGAAGACGGCCCCCGCCATTCGCTGCCCGACGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GACGAGGAAGGTCAAGGTCAAGGGCAAGAACGGGTCGGCCCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCCCCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 313-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000381.1 Streptomyces sp. SID4915 SID4915.c403, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 312 28 100.0 33 ............................ CGCCCCGCCTGCCTCCTCATTCACCGCTTGGTG 251 28 100.0 32 ............................ GCGCGGCGGGGCCTGCACCGGCCGTCGCAGGC 191 28 100.0 33 ............................ CGTACGGCGACTTGATGCCGTTGATGCTGGCGA 130 28 100.0 33 ............................ GCAGCGCGGCATCAAGAAGGGCCGCAAGGCCGC 69 26 92.9 0 ....--...................... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCTCCGGCGCCGCAGGTGTACCGCCTGCTGAAGGGCG # Right flank : CGCCCGGCCGCCCGGCCGGGACCCCGAACCGCGAGTCGGCCCCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 310-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000348.1 Streptomyces sp. SID4915 SID4915.c363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 309 28 100.0 33 ............................ CTCCCCTCCCCCTGGAAGAAGGCGACATGCGGT 248 28 100.0 33 ............................ CTCCCCTCCCCCTGGAAGAAGGCGACATGCGGT 187 28 100.0 33 ............................ GACGTGGCGGATCACCCCGCACCAGATCGCGGA 126 28 100.0 33 ............................ CCCCGCGCCGCCTCCGGCCTCAACCTCTCCGCC 65 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CCTCGGCCTCCCGCTGCTCGGCCGCCGCGATCGCCGCGTCGATCCGGGCCAGCCACATCGCGTGCCACGTCCGCAGCACGTGCAGGCGCGGCAGGTCGGCGGGCAGATCGGACATGTGTTCGAGTCTAGGTATGTTGGTGTCGGCGGTGTGCGGCACCCCCCTGCTTGACTTCGAAACGCCGCCTTCGCCTTCCCCTCCCCCATCAATCCGCCGGCCTGGTACCGGGGCCGCGTCGCCTGCATGGAAATCTCGCTCGCGACGGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGTGCACGGCAGTTGCCCGCCGAGGCACATGCGTGGGTGTGGACCGAGGACGGCGCATTCGGGCTGTCCGGCCGCGAGCGCCCGGCCCCCGCCGCCTCTGGGCCGGCGCCCTCGCCGCACCTCTCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCATTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGCATGTTGCTCTGCTTATCGCCGGGGACGCCATGTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1988-1414 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000348.1 Streptomyces sp. SID4915 SID4915.c363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1987 28 100.0 33 ............................ GGGCGTCCCGCTCACCACGGGCGTGGTCACCGA 1926 28 100.0 33 ............................ GTGGATGCCGTACTCCGACACCACGGCGGGGAT 1865 28 100.0 33 ............................ GGACGGGGCACTGTCGCTGCCCGCCGCCGACGC 1804 28 96.4 30 C........................... CAAGTTCATCCTGTACAACGCCGCCGGAGT 1746 28 82.1 33 .G..T.G......A..........C... GCGGCGGGCAGAGTCCTACGGCGTGGAGCATGC 1685 28 92.9 33 .................A......C... CACGTCCTGGCGCTGCCCACCGTCAACGGTGTC 1624 28 96.4 33 ........................C... AGAGACGGCGGCCGCCCTGACGTCCGGGCTCCA 1563 28 96.4 33 ........................C... TGCGTTCGGCGAGGACGTGCCCGACGGCAGCTT 1502 28 92.9 33 ...........G............C... CACCTCCGGCGCCGGGCCGGTGGCCACCACCAG 1441 27 85.7 0 ................T....C-.C... | C [1417] ========== ====== ====== ====== ============================ ================================= ================== 10 28 94.3 33 GTCGGCCCCGCACCCGCGGGGATGTTCC # Left flank : TGTTCGGGGTGTCGCTGAAGGCGGTCGACAAGTGGTGGGCGAAGTGGCAGGCGGGCGGCCGGGAGGCACTGGTGATGCGGCCACGAGGCAAGCCGGTGGGGGTGCATCAGGCGCTTGGTGAGGCCGAGCAGGCCGCCGTGCGCCAGGCTGTCCTCGATCACCGGCCCTGCGGCGTGGGCCTGAGTGGGCAGTTGTGGACGCGGCGGCTGATCGGTGACCTGATCGCGAAGCTGTACCGGGTGCGGCTGACCGAACCGGGAGTGGGCAAGTACCTGAAGCGGTGGGGGCTGTCCCTCCAGCGGCGGGCCGTCGAACAGAACCCGGAGGCCGTCCGGCGCTGGCACGAGGAGGTCTGGCCGGAGATCCACGTGAAGGCGAAGGCCGACGGCGGCGAGATCCTCTTCGCCGACCAGGTCGGCATCCGCTCCGACCAGGTCACCGGCCGCACCTGGGGCGTCAAGGGGAAGACCCCTGTGGTGCGGCGGAGCGGGAACCGGTTC # Right flank : TCGGCATCCATACGCCCCCTACCGCCCCAGCCTGGCCCGACGCACTATGGCTCTCCCGGCACACCCGCCGGTCCAAGGGGAGGGGTGGCCATGAACTGTCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCTGAGATCACCCGCACCGAGTGCCGCCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGTGGCTGGGTCAACCCTTGGTACGAGGGGCACGGCGAGCTGCCCACTGCCAAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGAGTTACAGCAGTCCGAGGTCCGTGTCCGGTCGGCACATGCTGCAGGCCTCCACATTGAGGAGGGCCTGCCGGGCCTGCTCGGTGTCGAGCGGTCGGACGCGGGACCCGGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 20474-20323 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000348.1 Streptomyces sp. SID4915 SID4915.c363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 20473 28 96.4 34 ...........C................ CGACCGCCACCAGGGCCTGGGTGACTGATGGCCC 20411 28 100.0 33 ............................ CGTGTGGATCAGGGCGTACTTCAGCGCGGCGGA 20350 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 3 28 98.8 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : TGCCGGGCCGTCCGGCCA # Right flank : CTCTCGGGGACCATCCCCTGAGTAGGTGTTTGGGGACCATCCCCTGAGCTTGTTCTTTATCTACCAAGATCTTCCGGGCTTACCGATGGCCTTGAGGGTCTCGGGACGTTTGACGGTTTTGCCGACGTCGTAGCGGGGTGCCCGGCGCTTGTTCTTGGCACCGGGTGGCCGTCCGGGGCCGGCGCCGCGGGGTTTGGGAACACGGGCCGGGCAGGCGAGGTGAGCGCGGATGTTCCTGAACCCCCGACGGACCCGGGCGGGGGTGAGCCGGTCGGAGGCGGTGGGTTTCTCCCAGGGCCGGCGGAGGTCCGCGGCGAGGGGCCGGGCGAGCCGGAGCTGGGTGTGAGCGACGATCAGGATCCAGGTCCAGCGGTCCGCCGCCTCGGGAGTACGTAGTCTCGGGGTGGTCCAGCCCAGGGTCTGCTTCGCGAACCGGAAGGTGTGTTCCAGGTCGAAGCGGCGGAGAAACGCCTGCCAGAAACGGTCCACATCGTCCGGGG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 193-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000387.1 Streptomyces sp. SID4915 SID4915.c411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 192 28 100.0 33 ............................ CCACGTCGCGCAGATCGCCCCCGCCGGATCGTG 131 28 100.0 33 ............................ CACACGCAGGACCCCTGCCAGGGGGTTCTGCAC 70 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCCGGTCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGGATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCTCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGAGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGGGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CGTCGCGGGGGCCGCTGGGGGTGAGGGCGTCGGCGTCGGCCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8117-7598 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000387.1 Streptomyces sp. SID4915 SID4915.c411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 8116 28 89.3 33 CC......................T... GGACGTGGGGATCACCCCGCCCGGTGGCTCCGT C,C [8100,8107] 8053 28 96.4 33 ........................T... GAAGCAAGCCGCGGGCGTTCCCTGGCGTCAGCG 7992 28 100.0 33 ............................ CGCTTCTTCCTCGGCCGCCCGGCCGACTCCGCC 7931 28 100.0 33 ............................ GCGCCTCGACGTGTACGACGGGAGCCAGTGGGT 7870 28 100.0 34 ............................ CAGCACCGGCATGGCGCCGTGGGAGAGCGCCTTC A [7859] 7807 28 96.4 33 ..T......................... CTCGCGGGCGTCGGGCCCACCGTGCTCTACCGG 7746 27 96.4 33 ...............-............ CGCGGTCAGCACCAGCCGGTCGGCGTCCGGTAC 7686 28 100.0 33 ............................ CTGGCAGCGGGTGGCGTTCGTCCTCCCGCTCGT 7625 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================== ================== 9 28 97.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : | # Right flank : CGCCACGGCGCCTAGTTGACCTGAGTCAGAGATTCGTCGGCAGTAGGTGGCGACTTTTTTCGAGGATTTCGTCGGCCGTCTTCGTCCAGACGAAGGGCCGCGGGTGTTCGTTCCAGTCGGCGAGCCAGGCACGGATGTCGCGTTCGAGGGCCTGGACGGAGCGGTGGACGCCTCGCTTGAGCTTCTTCTGTGTGAGCTCGGCGAACCACCGCTTCACCAGGTTCAGCCAGGACGAACTCGTCGGTGTGAAATGCAGGTGGAAGCGGGGGTGCGCCAGCAGCCACTGCTTGATGGCCGGCGTCTTGTGGGTGACGTAGTTGTCCAGGATCAGGTGCACGTCGAGACCGGCGGGGACTTCTTTGTCGAGCTTGGTCAGGAACTTCGCGAACTCGACAGCCCGATGGCGCCGGTGCAGGGAGCCGATCACCTTGCCGGTGGCGACTTTCAGGGCGGTGAACAGGGTGGTGGTGCCGGCGCGGACGTAGTCATGGCTGCCGGGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 10395-10665 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000391.1 Streptomyces sp. SID4915 SID4915.c415, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10395 28 100.0 33 ............................ CGCTGCCCCGAGGGTGCTGCCGATCGACGCCGC 10456 28 100.0 33 ............................ CGTACGCAGGATCGCTCAGTACGACAACCCGTG 10517 28 100.0 33 ............................ GGTCGTCATGGCCGGGAGCCTAGGTGCTGTCGG 10578 28 100.0 33 ............................ GGCGGAGGAGAGGTACAGCGCGTAGGGCTGGCG 10639 27 96.4 0 .................-.......... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 99.3 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCCTGACCCGGACCACCGGACACCTCATCCAGCAGGCCCCGCGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCTACGGCAGGCGCCCGCTCTACGCGGTCACGCACACCGCGCTCCCTGAACACCATCACCGCCTCTCGCTGCCTGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCTCGGTAACCTCCCAGGTCAGTAAGT # Right flank : | # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 193-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000392.1 Streptomyces sp. SID4915 SID4915.c417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192 29 96.6 32 ............................C TGCTCATGGTCGAGACGGACGGCATGGCGCAC 131 29 100.0 32 ............................. TCGCTCGGCGAGCACTTCACCGGCTCCCGCGA 70 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCACGCCGCCGATACGGAGTGGGCGCACCTCGCCGAACTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACAGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCGACCCCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GACAGCGTTCGGGATGATGTCGCAGTACGTCGAGTCGGCCCC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3588-3158 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000392.1 Streptomyces sp. SID4915 SID4915.c417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 3587 24 85.7 33 ----........................ CTCGCTGGCGGCCGTGTAGCCGCCGGAGACGGT 3530 28 100.0 33 ............................ CACTCCACACACCGACACCCCTCGTGCACATAC C [3525] 3468 28 100.0 33 ............................ CGAGGTCGACGCGGTCCGTGCCCGCTACAACCT 3407 28 100.0 33 ............................ GGCGGGCACGGTCGACCGGCTGCGTCAGGTCGA 3346 28 100.0 48 ............................ CACGCTCTCCGGATACCCGACGTGGAGGCGCGGGTCGGCCCCACCCGC 3270 28 96.4 57 .............T.............. CCAGCGGCGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTTCCAGGG 3185 28 82.1 0 ..........A.........C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 7 28 94.9 40 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : | # Right flank : GCAACAGGGCTCTGGGTGGGTATGCAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGTCCACCGCGCCGGTAGCCTTAAGTGGGCAGGTGCGGTGGGCAGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACCCCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCACCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACGCCGAGCGCGGTCGGCTGCGGTAACTCCTGCGTTGTCGTCGCCATGGTCATCCCCTGCTGTCCGACCGAGATCAGCAGGATGGCGCGCGGCCAAGGCCGGAACGCTCACAGATCTGTGAGCGTTACACCCCCACCCAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53-266 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000060.1 Streptomyces sp. SID4915 SID4915.c63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 53 26 100.0 37 .......................... TTTTGGGGTGCGGTCTGTGGTGACCGTGCCGGTCAAG 116 26 100.0 36 .......................... GAGGGGGCGCGGTTCGTCGTGACCGCGCCGGTCAGA 178 26 100.0 36 .......................... GGGTTTGGCGGGGGTGGTCTTCCTGTGCCGGTTACC 240 26 96.2 0 ............T............. | G [242] ========== ====== ====== ====== ========================== ===================================== ================== 4 26 99.0 37 GATGGCCTCAAGCGCCGGCCGGGCTG # Left flank : CGCCGGCCGGGCTGATTTGGGGGTGCGGTCTGTGGTGACCGTGCCGGTCAAGG # Right flank : GGAGTGGGTGTGGGGCCCACCCCCCGACATCCCGCCTCACAACAACAGCCCCACCGAACGACCGAAGGACCCCGACGGCCCAGCCCACCGGGGTCCTTCTGTTCTCCAGGCGCGCCACCGAACCACACCACCCGGCCCACTCCCGGCCAAAGTCAGCCCAGCCAATCTCCAGCCCGGCCGGCGTTTGAGGCCATCTCTGAGCCGCGGCCGAAGGCCGGAGCCGGGCCAAATTCCAGCCCGGCCGGCGCTTGAGGCCACCTCTGGCCCGCGGCAGAAGCCGCAGCCCAGCCCCCCGCAGCCCGGCCGGCGCCTGAGGCGGGCCCAGTCGGTGGGGGAGGCGCGTCCGCCCGGGTGGAACCCGTACCCCTTCACGGCGTGTCGGCGCGACGGGTCCGCGCCGGAGGCGTTCCGTGGCAATAGATGTGATCAGCTCCATATACCGCCAAACGTGATCAAATCCCGGTGACTCCCGGAGGTACGCCCCATGTTCCACGACGGCG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGGCCTCAAGCGCCGGCCGGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 11984-12195 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWJP01000152.1 Streptomyces sp. SID4915 SID4915.c157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11984 29 100.0 32 ............................. GTGGCCAGTTTGATCTGTGCGCTTGCTCGGAG 12045 29 100.0 32 ............................. ACGGTCAACGGCTACGCCGCCGACTGGAAACA 12106 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 12167 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGTCTGGCGGACGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCTGCGCCCGTGCTGCTGGGCGGGAGCATCCTGGCTGCGCGACGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGAGCCGGCGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCTGTGCTGGGGGCGGTGCTATTGGGGATGGACGCGGTGGGTGCGGGGGTGGGGGCTTATGAGCGGGTACGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAGCCCGCAGGTCGGAGAGA # Right flank : CTGCTCTGTGATCACGGCGAGCAGCAGGGTCAAGCGGGTGCCCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCCGCCCACCCGGGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCGTGGGTGCGTTGTCGGTGCCGGGGCAGCGGTCGCCCGCGGCTGCTCCTGAGACGCCTGGTCCGGCCGGTGAGCCCGGTCATGTTCCCGAGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //