Array 1 439513-438583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSJ01000013.1 Photorhabdus khanii NC19 PTE_gnl_UNH_Scaf_13.13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 439512 28 100.0 32 ............................ TTTTCGCTTACATATTGGGCATTCACCCTGAT 439452 28 100.0 32 ............................ TGCACCACTAACCGGTGCAGCATTTGCACCAG 439392 28 100.0 32 ............................ GTAAATTAGCAGTCAAGCACATATCATATTTC 439332 28 100.0 32 ............................ ATCCGGCGTTTACCGATATCGACATCAATAGA 439272 28 100.0 32 ............................ TCCCAAATCCAGGTCTGATAACCGTAGATGCT 439212 28 100.0 32 ............................ TGGTGAAAGAGAGCGGTTAGTTTTACCTTCCG 439152 28 100.0 32 ............................ ATACCAAAGTGCTGTGCTGCTTCTGACAGGGA 439092 28 100.0 33 ............................ CGTTCCCATATCCAGCGCTTTTATTTTTTCCTC 439031 28 100.0 32 ............................ TTATTATAGGTTTTACTGGTAATCAGATTTCG 438971 28 100.0 32 ............................ ATTGCAAAAATTCAGCTGTTGTCCACATTCCT 438911 28 100.0 32 ............................ AGTCCGGGGCGCTGTCATCAAGGGGTAGTAGC 438851 28 100.0 32 ............................ ACGAACACTATCAATAATGTAGAGATTGCCAT 438791 28 100.0 32 ............................ CCACGAGATTACGGCGGATTGCTGACGACAAT 438731 28 100.0 33 ............................ AACGATACCCGCATTCGTATGTCAGCAGGTCGC 438670 28 100.0 32 ............................ TGCGGATAGCAGAGATACCGGGCAAATAGAAC 438610 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGCGTCAGCAGGGTATGCATCGGATTATGGCTAACTATATGCCTGATAATCATCGTAGTGGTAAATTATTGGAACGATTGGGTTTTGAGCGTGAAGGATATGCAAAGAAATATCTGATGATAAATGGAATTTGGCAGGATCATGTATTAACCGCACTGACAGATGAAAAATGGAATGGAAAAAGCTGATGATCAGATTGTACTGCTAGATAAACAAGAAACTGCCTAGTTACAAAGTTATAGCGGAACTTAAATTACAGTCTCGTCGTAAGCCCCATCATGGGGCTTTTGCTCATTAATGAACAAACAGATGTAGAGAGAAGGAGGGAAATGTAACTTGAAAGATGGTGTTTCCTCATACCTTATTTTTGACCCTTTTTTCTCAGTTAATTATAATTTATTGATTTATTTAAGAGATTAGCATCTGTTAAAAAAAAGGGTTTTTCTCCTTTGTGTCATTTTGCTCTTTAATAATCAAGAGATTAAAGTTAGTATTCAACA # Right flank : TTAGAAAGATCGATTTATAATACCCTTTTGACGCAAATGGTATTCTCTGACAGACTGCAATGCATAGGAGCTATCTATATAGCAGACTTACCAATGGAGGCAACCATGAGTCATACCCGTTACGAAACTGATGTGGTCGCTTGGGCGAATGAGCAAGCAGCATTATTGCGTGCAGGTAAATTCTCTGAGATCGATATAGTTAATATTGCCGAGGAGATTGAGGACGTGGGCAAGAGTGAAAAACGTGAACTGGCAAGTCGTATGGCGGTTTTGTTGGCCCATCTTCTGAAATGGCAATTCCAGCCTGGCCGTCGTGGTTCAAGCTGGCAACGAACTATCAGGGAACAGAGAAAAGCACTGGAATTGCATATAAAAGAGACACTTAGCCTGAAAAGTACCATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCCGTTTCTTCCGCTGCCGACGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 197841-198469 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSJ01000014.1 Photorhabdus khanii NC19 PTE_gnl_UNH_Scaf_14.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 197841 28 100.0 32 ............................ TGATGAATACGAAGATGAGGTTACAGATGAGG 197901 28 100.0 32 ............................ TTGAGTTTCCGCACTTAGATCGGTGAAGTCAG 197961 28 100.0 33 ............................ AAATGGAACGCCAGTCGCTACTGCTGGCTATAT 198022 28 100.0 32 ............................ ATCACAAATTACGCTGATTATCAGGGTGATTT 198082 28 100.0 32 ............................ GGACGGATATGCAATCGCTAGCTGAGGATATT 198142 28 100.0 32 ............................ ATTTTGGGGAAATAAACGCCTGCCTGCAATTG 198202 28 100.0 32 ............................ AATAGACTCTGTTTATGGTCGTTAGCGTGTTT 198262 28 100.0 32 ............................ TTATCGGTAATGTCATAATGACATGATAGCAT 198322 28 100.0 32 ............................ ATGTCTGACCAGCGCGGGTGCGAGAGCGTTAT 198382 28 100.0 32 ............................ GAGTTTCTACCTGCTACGTCAACAATGATGTG 198442 28 96.4 0 ................T........... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTCCTTTGTTATTGGTTTATTGTTAGGATAAAATGCTTAAATGACTGTATTTATAAGATCCGTAAAGAAGATATTTTTTCTAATAAATTTAAATGGTTTTTTCGGGAATACATCGTGAGAGTTTAATAAATGCTAACTTTAATTTTATCTTGCTTTGGTAAAAATGATTACATTAAAAAATTTAGAAAAAAGATAAACGGAAATAAATGTGTATATAGCCGACATCTTATTGTTGTATAAGTTATTTTTTCCTCGTTCCAATGATTAAAAAGCTTGCATAGAAATCCACTTTCAATGTCTACCAAGTTTTACCTGGGTTTACATTTTTATTGCTAAGAAGGATGGTGTCTCCTTGGCGCCTTGGCTTTGACCCTTTTTTATCGGTAAATTATAATTCATTGATTTTAAATAGTGTTTTATCTCTTCTGTAAAAAAGGGTTTTTTGACTTTTTATAACTATACTTTTTAATAGTCAATAGGTTAAAGTTAGTCTGTAACA # Right flank : AACTCGGTGTTATTCCTGATTCATGAAAGACACTATGTAATGTTTTGGTAAGGAATTGTAAATTTTTTTAATTTACATTCCCGATATTTTACTTGTGTAAAATTTATGCATAATATTTTCTATAAGTAAAATTAATTATTTGGGCGATTCTTGACTATGGATAACAACTTTTCTCCGAGTGATCTCAAAACGATTTTGCATTCCAAGCGATCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGTCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTGTATTGGAATATTCCAATTGCCAATACCACCGTTATTATGTTGGGAACGGGGACTTCTATTACTCAAGCTGCAATGCGTGAATTCGCCAGAGCGGGTGTTTTAGTTGGTTTTTGTGGTGGTGGAGGAACGCCGCTGTTCGCAGCTAATGATGTTGAGGTTGATGTGTCCTGGCTTACGCCACAAAGTGAATATCGTCCTACTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 211643-212329 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYSJ01000014.1 Photorhabdus khanii NC19 PTE_gnl_UNH_Scaf_14.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 211643 28 100.0 31 ............................ GCGCAAAATGGGCACACTCTTAGATATATGG 211702 28 100.0 32 ............................ AAGCCGACTTATTGAAACTGGGCTATTCCGAT 211762 28 100.0 32 ............................ CATACAAAGTGGCTGTGCAAGTACCATATCGT 211822 28 100.0 32 ............................ TTAATAACCCACGGAGATATATCGCTATACGG 211882 28 100.0 32 ............................ ATACGAACTGGAGAAAGCAGCAAGTACATTCA 211942 28 100.0 32 ............................ CTACATCAAGCGGGTTCACACTGTTCATTAAA 212002 28 100.0 32 ............................ TGCTCATACTATCAATATTCCTGAGCGTTCAT 212062 28 100.0 32 ............................ ATAGTGAGTTAAGCGCCGAGAAAGCCAGAAAA 212122 28 100.0 32 ............................ AGATGAACTAGAGGAAACATTGTATGAAAGTT 212182 28 100.0 32 ............................ GTGGGTTATTAAGGCCGCTGAACAATGCAGGA 212242 28 100.0 32 ............................ GTTAGCCATCCCCCATTAAATTCATCAGGAAT 212302 28 82.1 0 ......................GC.CGC | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCGTTGCAGGATTTACAGGCGTTACCTTGGTTAAAAGGGCTCAGGGACTATACTGAAATGGTTGATATCCAGCCAGTACCTAAAAACACTCGATATCGTTGTGTTAGCCGGGTACAGGTTAAAAGTAACGCAGAGCGGCTTCGTCGTCGTTCGGTTAAAAAGGGCTGGCTAACCGAGGAACAAGCTCGGCAATGCATCCCAATAAGCAAAGAACAACGTACTGATTTACCGTTTCTGAACCTCAAAAGCCTGTCATCAGGACAAAGCTTTCCGTTGTTTGTTGAACAAGGACCAATAGAAGACAGACCAACACAAGGAGTTTTTAGTTCTTATGGATTAAGTGCGTCAGCTACCATCCCCTGGTTTTGACCCTTTTTTAGCGGTTAATTATAACCTTTTGATTTATTTAAGAGATTAGCCGCTGCTTATAAAAAGGGTTTTTCCGCTTTTTTTAACTATGCTCTTTAATAATCAGTAGATTAAAGCTAATATCTAACA # Right flank : CTCAATTGAGCGCGCTAAAAAATAAGCTAATCTTGTTTTCTAATATGAGTTATTTCTTATGGTTTTGAGCATATTCTTCACTGTTAACCCATTGATGGTCTTTCTCCCAGGTAAATAGCCACTTGCGAGTTGGTCCTGCCATGACATTGAGATAGTAGTTGTTATAACCAGCAATGGTTGCCACTGGGTGATAGCCCTTGGGAACAATGACCACATCTTTGTTATAAACCGCCATTGATTCATCCAGTGAACAGTTATCGGTATAGACTCGTTGCATACAAAATCCCTGCGCTGGGTTCAGGCGATGGTAATAGGTTTCCTCCAGATAGGTTTCCTGTGGTTCATTGTCAGTATCGTGTTTGTGGCTGGGATAGGAGCTGGTACAGCCCTCATCGGTAAAAACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAACGTTGGTTGAAACCGCTCCCGCGTTTTTCTGCGTCAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //