Array 1 217239-217498 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019823.1 Leptotrichia hofstadii strain JCM16775 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 217239 38 94.7 36 .......G....A......................... TGTTTCATCTCTATTACTTATTATAGAAGCATACAT 217313 38 100.0 36 ...................................... AATCCCCCCGATACTTTTTTATAACAATCTTTAAAT 217387 38 100.0 36 ...................................... AAGAGCTGTTTAACCACGAATGACTCTAAATCTAAA 217461 38 89.5 0 T..............................G....CT | ========== ====== ====== ====== ====================================== ==================================== ================== 4 38 96.0 36 GGTTAAAATAGAGTATCCATTAAAACAAGGATTGAAAC # Left flank : AGTTGCTCAGAATATTAAAAAAGGAACAGAAGATGTTCTAGGTAAAACTGTGGAAGGTGCAAAAGATTTAGCAGATAAAGCTGCAAATAATAAAATTGTACAAGATGTGAAAAAAGGCGCTGAAGAAGCAGTAGACAAAACAGTAGAAGGAGCTAAGGGATTAGCAGATAAAGTTACTGGAATGTTCAAAAAATAGTAAAAACAAAAATGCAATAAAAAAGGTTAGCTGGAGTATCAGTTTTGGTACTCCTTTTTTAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTAAAATAAATTGGTGGTAAAAATTCCTGCCACTACCAAAAATAATAAAACTAGAGAAAAATCTATTTAAAGCCACTAAAAATGCAGGCTAGGAGTTACGGAAAATGCTAAAAAAACATCAAAAAATAACAAAAATTAAGCAAAAAAATGCGATTTTAATGTCTGAAAAAATTTCTGTAATACCGATAAATAAAGGGTTCTCTCAAAAGTACG # Right flank : TATTTGTTAAAAACAACAACTTTTGTATAAGGTTGTTTTTTTATTTATAAATAAAATGAGTTAAATACTTTATTCCATAAAATTTTTAAAATATTTTGTTATTTTTTATGAAATTTGGTATAATTAACTAAGAATAAATTAGGTGATAGATTTAGGGGAAAAGAAACAATAGAACAAAAGAAATATTTGTTAGTTGATGTAAAAGAGGCTCTTAAGAAGATAAGCGAAAAAGAGAAATAAATTACAGTAATATTGTAAAAATGGTATGGTGTTTTGGAAAAAGGATGTGGAAGCGGGGATTGAAGAGGAGTAAAAGAGAAATGTAGCAGGAATTGGAAGAAAGGCCTGCGATTTTGGAAAGGAAGTTTTGTGAAAATAGTAAAAAATTATTATAACAGGTTTAAGGTCTTAAATCCCAAATATTCAGAAATAAAACTGGGGATTATTGTTGCAATTATTATTTATTTTATTGCAAGAATTTTTTTTGCTGTGGAAATTTC # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAAAATAGAGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 1370812-1371066 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019823.1 Leptotrichia hofstadii strain JCM16775 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1370812 36 100.0 37 .................................... CATTTAGTGTTTTTATTATAGTGTATTTTTATTTTAG 1370885 36 100.0 39 .................................... GGTCTTGATAATCTTTTTTATTGTTTGAATTATAAATTA 1370960 36 100.0 35 .................................... ACTTTTCAAATTTTTCTACAATATATTTTACATCT 1371031 36 86.1 0 TC.............................AAC.. | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 37 ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA # Left flank : TTTATAATTCAATATTAATAAGGTGATAAGGTGATGATGATATGGATGAATGGGATTTTTTAGATGAAGATTTTTGTAATGAATTTTTTGAAGATACCTTTACAGTTGTTGTAATTTATGATATTATAGACAACAAGAGAAGAGAATTTCTTAAAAAACTTTTAAATTCTTTTGGAAATAGAATTCAAAGGTCAGCTTTTGAATGTTTATTGACTAGAGAAAAATGTGAAATTCTTTTAAAAAAAATAGAAAAGTTTGCAGAAGAAGGTGATTTAATAAGAATATACAGACTTAACCAAAATGTAAAAAAAGTAATCTACGGCGAATTAACAGAAATTGAAAACGAAGATTATTATTTTATATAGAAATTGCCACGATACTGTAAAAATGGGAATTAGAACATAATTTTTATTCTTTTTGTAAAAAAACTGAAAATTTAAATAATTCTCACGAAAATAGCCAAATAACATATCATAAAATAAGGGGTTAATTGTAAGAGG # Right flank : AATAAAATTTTAAAATATAAAATGTCTTTTATAGGCATTTTTTTGTTTATATTTATTCCTTATCGTAAAACGAAAATTTATTGTCTTTTCTGAAATAACATTGTATAATGTATTTAAATAAATTATTAAAAATAACAAATGAACAAACAATAAAATAGAAAGGATTTTTTTACTTATGATAGCAGTGATTGATTATGGGGTAGGAAACCTTTTTTCCTTACTTTCTTCTTTAAACTATGTCGGACTGGATACGAAGCTGACTAATAATATTGAAGAGATAAAAAATGCTAAGGGGATAATATTGCCAGGAGTTGGGGCTTTTAGAGATGCTATTGGGAATTTGGAAAAATATAGGCTAAAAGAGATTTTGATAAATGAAGCAAAGAACGGAAAGCCGTTTTTGGGAATTTGTCTTGGTATGCAGATGCTTTTTGAAAAAAGTTATGAATATGGTGAATATGAAGGACTTGGGCTTATAAATGGAACTGTTGAGGAAATAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 2133743-2133115 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019823.1 Leptotrichia hofstadii strain JCM16775 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2133742 37 94.6 37 .....................G............G.. CTTTCCAACATGTTTCTCATTGTTTATCCTTTCATTA 2133668 37 94.6 36 .....................G............G.. TTCTTAAAATTTCATTTTTTACATTTCTTTCCATTT 2133595 37 94.6 36 .....................G............G.. ATTAGATAATTCCATTCAGACAGTAAAGTATTACAT 2133522 37 100.0 36 ..................................... ATATGCTTCACTTACGTTAGCCACATTTACCTCCTA 2133449 37 100.0 40 ..................................... TTTATCTGGGTAGTTAGTATAACTCAAATAGTCATTAAAG 2133372 37 100.0 37 ..................................... TTTACATATAGGAAATTCTCCTATATGTATATTGAAT 2133298 37 100.0 37 ..................................... CTTATATTGTAGATATGTAACATTGCGAACTGAGGCA 2133224 37 100.0 36 ..................................... GTATATGTCTATGTCTTTATGAGAAAATAAACTGAA 2133151 37 94.6 0 .................................G..T | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 97.6 37 GTAAGAATAGTGAATCCATTAAAACAAGGATTGAAAC # Left flank : TTGACAGCAGAAAAAAATAAAATTTAACTAGAAATATTTTTTATATAGTTTGAGAAAAGAGAGAAATTTAATAATATTATTTTTCTCTTTTTTTGTTTTGATAAAGTAATACTAAGCCCTCATTTGAATAGTAGAAATCAGAAAATTCATGTAATTAAAGTCTTTTTTACAAGACTACCAAATTAATTGCTGTAGAATTTTATTTCTATTTTTTAAATGGAGTTTAGTATAAAATATTTGAATGGGGAAATTTTTCTAAAAAACTTTGAAAAATCAAAAAAATATGGTACAATAAGTTTGTAGAAAAAATTCCTGCCACTACTAAAAATTAAAAATGCAGAGAAAAATTCGCTTAAAGCCACTAAACATGCTAGTTAGGAGTTACGGAAAATGCTAAAAAAACAGCAAAAAATGACAAAAATTAATCAAAAAAATATGATTTTAATGTCTGAAAAAATTCTTGTAACATTGATAAATAAAGGGTTTTCTCAAAAGTACGG # Right flank : AAAAAATTAAAGGCAACAACTTTTATGTGAGGTTGTTTTTTTGTTTATAGAAAATTGTGAAAAAGGAGTGAAAGAAATGGCGATAATTTTTGTTACTGGCGGGGCGAAAAGTGGGAAAAGCAAGTTTGCTGAAGAGTTAATTTTAAGTTTGAATAATGGGAAGCAGGAGAATGTGTATTTGGCAACATCGCTTGTGTTTGATGAGGAAATGAAGGAAAAGGTGAGGTTGCATAAGGAAAGAAGGAAAAACGATTGGGGTACTGTGGAAACTTATAAAAATTTTGAAAGTAATTTAAATAAATATTTTCCTAAAACAGAAAATGAAATTAAAAATAATATGCTTGTGGATTGCCTTACGAATATGATAACTAATATAATTTTTGAGGAAAAGGATGTTGACTGGGATAATTTTGACAAAAAATCTTATGTAAAAATTGTGGAAAAGTTGAACAAAAATGTGGAAAACACAGTAAATGAACTGCTGAATATAACGAGTCAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGAATAGTGAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : GTAAGAATAGTGAATCCATTAGAACAAGGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //