Array 1 398320-398694 **** Predicted by CRISPRDetect 2.4 *** >NC_014804.1 Thermococcus barophilus MP, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 398320 30 100.0 40 .............................. TCATTAAGTATCTTATTGCCTCCTCAATCTCCTTTAAAGT 398390 30 100.0 37 .............................. AAGCACAATTCTTAGAGCAGCAGAATAATGAGTACAG 398457 30 100.0 41 .............................. GCTCAAGCAGGCATTAGAAGCCATCGGGATGAAGGTTTTGT 398528 30 100.0 39 .............................. GCAGGCGAGAAATTCAAACTTTCGTGAGAAGCCTTTCGA 398597 30 100.0 38 .............................. CATAGCCTTTGCATAAGAAATTCTTCCAGTCCTAAAAT 398665 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 100.0 39 GTTCCAATAAGACTCCAAGAGAATTGAAAG # Left flank : TGTCCCATTTAATATTTTTGAAAATTTTTCGATCCTTGCTGGGGTTTTAGTTTTTGAAATTCTTTGGCTTTAGTTTGCTTTAATTTCAAAATGAGGGTTTGTGAGTGGTTTGGATGTTTTTAGTAATTGTTTGTTGTTAAATTACTTTGCGTTGCAAATTTTTGTTAAAATTGTAACGTTTTGAATGTACACATTTGGATTTAGGATCTTTGGGAGCTTCTTTGGTATGCTTTCCTCATGGAAATTTGACCATTTTAAAATTAAAGATCAGAGAGGTTAGATTTTTGGATTTCAAAGTGTGAGAAGGTTTTGGAAGTGCTACGGGCATTGTTGTGCATTGGCTGGAATCATAAAAGGAACCGCCAATTGGGGTAGTGGAGTGACATCAGTACGCTAATTAGAGGGTTATCTTGGCTTTGTTATTAACCCTTCGGCAAAAAGCTTTTATAATTCAAGAGTTCTTATACTCTTATTGGGGAAATAAGGCAAAATCCCGCCCT # Right flank : GATTCTTTGTTTGCAGCATCCCAAAACAGTTTGCGATGTTCCAATAAGACTCTAAATTGAAACCATTTCTTCTCTCGTTTTATTATGGAATTTGCTCTTAAGCTAAATGTTTATATTTTTGAAGTTGCACTTCATTTGGGATGAAAAATGCTGCCTGTTGGAAAAGTTCCGCCAGAGAAGCTTAGGGATGTAGTTTTCAAGCACTTGGGCGTTCGAGGAGAAAGAGTATTGATTAAGTCTGGCATTGGAATTGATGCTTCAGCAATTGATTTCGGTGATAGCGTTCTTGTTGCATCCACGGACCCAATAACAGGTGCAGAAAAGCATATAGGGTTTTATGCTGTCAATATAAATGCCAACGATGTCGCAACTTTTGGAGCAAAGCCGAAGTGGTTTTTAGTTTCCGTTCTTCTGCCCGAAAATGCTGATGAAAAACTTTTGAAAGAGATAATGTCCGATATTGATAAGAGTGCAAAAAGCCTTGATATCGCAGTAATTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCCAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 580050-579476 **** Predicted by CRISPRDetect 2.4 *** >NC_014804.1 Thermococcus barophilus MP, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 580049 30 100.0 40 .............................. TGAATCTTTGATTGAGTTCCTTGAGCAGCAGCCGATTCCA 579979 30 100.0 37 .............................. AGGGTGTTAGGGTTAGGACGGGTGTTGGTGTTAGGAA 579912 30 100.0 37 .............................. TATTTTTCTATTTTAGTGCATCTTGGGCCATCCTCCG 579845 30 100.0 38 .............................. ACATTCACAATCCCTGAGAACACGATTTACGAGCTAAC 579777 30 100.0 37 .............................. CTGAGCGGAGTTGCGAACCTTGGAGATATTCTTGCAA 579710 30 100.0 38 .............................. ATCGGACTGATTCTGATTGGAATATTCTTATTCATGCA 579642 30 100.0 37 .............................. CCGTGTACGGAAGAAGCGAGGAACGAGCCGAAATGCC 579575 30 100.0 40 .............................. ATTATTGATGAAATTGCTCCTCCAACAGTCCCTATTACTC 579505 30 93.3 0 ...............T.............T | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 99.3 38 GTTCCAATAAGACTCCAAGAGAATTGAAAG # Left flank : AGAGTACTATTATGCCGACTGAAAAACTTTCGCTTCTCATTATCTTCTCTGTTTTTGTAGTTTTTGACTGTTAACTCTAATTAATTTCAAAATGAGGGTTTGTGAGTGGTTTGGATGTTTTTAGTAATTGTTTGTTGTTAAATTACTTTGCGTTGCAAATTTTTGTTAAAATTGTAACGTTTTGAATGTACACATTTGGATTTAGGATCTTTGGGACTTCTTTGGTATGCTTTCCTCATGGAAATTTGACCATTTTAAAATTAAAAGCCAATAAAGTTAGATTTTTGGATTTTAAAGCGTGAGAAGGTTTTGGAAGTGCTACGGGCATTGTTGTGCATCGGCTGGAATCATAAAAGGAACCGCCAATTGGGGTAGTGGAGTGATATCAGTACGCTAATTAGAGGGTTATCTTGGCTTTGTTATTGACCCTTCGACAAAAAGCTTTTATAATTCAAGAGTTCTTATACTCTTATTGGGGAAATAAGGCAAAATCCCGCCCT # Right flank : ATACTTCACGCTTTTGCAAGCTTTTGTGTAGTAAACAAACATTTTTAAAGTACTCTTGTCTTACAGACATTTAGGTAAGCCTAAATTCTGGGGTGAGGGTATGGAAGCAGTAATATCAGAGAATGTCAGCATTTACTATGGGAACTACGAAGCAGTTAAAGGACTAACCTTTAAACTCCATGAGGGTGAAACTCTGCTCCTAATGGGGCCCAATGGTGCGGGGAAAACAACTCTACTCAGAACATTGGCTGGATTCCATAAAGAATACACTGGAAAGCTGTCAATTTTTGGTAAACCGCCGCATGAATCTAAAGACTTAATCTCTTATGTACCTCAAAGCCATTACCTAAATGAGAGAGTTCCCCTTACAGTGCTTGAAGTCGTTGCAATGGGGCAAATCTATAAAAAAAGTTTTGTACACTTTAAAATCCCAAAGGAAATTCTAAAATCCGCAGAGGAGGCACTGAGCTTTGTTGGGCTGGAGAGTATAAAAGATAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCCAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 1334169-1334873 **** Predicted by CRISPRDetect 2.4 *** >NC_014804.1 Thermococcus barophilus MP, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1334169 30 100.0 37 .............................. AGCTGCAACCGGTTCAGCGTAAATGCTGATGAGGAGC 1334236 30 100.0 37 .............................. CCGAACCCAACAGAAGCATTTGTTTTTTCATTAGAAC 1334303 30 100.0 36 .............................. GCAAACGTCGTTGTTGCAGGACTAATCAGCCTCTAC 1334369 30 100.0 37 .............................. GCTTTTTCAGCTGTTCATTCTCTTGCTTCAGCTTTGC 1334436 30 100.0 43 .............................. AACAACATGAAGCCTGGTGAGCCGCCGAGATTCCTTGATGCAA 1334509 30 100.0 38 .............................. TTCACAATGAAGTAGTATGCAACGTCCGTCTCCGCAAG 1334577 30 100.0 36 .............................. GCGTTTGAAACAAAATTTGCAGAATTGTTGACTGCA 1334643 30 100.0 37 .............................. AGCTGTCTCTATTGCCTCCTCCTCAGTCCTTGCAATC 1334710 30 100.0 36 .............................. TCCAGGTCGAGAAGCTCGAAGACGGCAAGATAGTCG 1334776 30 100.0 38 .............................. CAGTATGATGGGGGGGTTTGGAAGTGCCCGTTTTGTAA 1334844 30 96.7 0 ...............C.............. | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 99.7 38 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : TTCTTTCTTAATTTTGTCGAATGTTTTTTGATTCTTGTTTGTTTTGCTCCTTCTGCAATTTCCAGCTGTAAGAAATCATTAATTGTAGAACAGCAGCTTGTGGGTTCTTTGGATGTTTTTAGTTATTACTTGTTATTAAATTACTTTGTGTTACAGATTTTCCTCAAAACTATGGCGTTTTGAATGTGCACGGTTGGAATTGAGGATTTTCAAGGCTTCTTTGGTATGCTTTCCCAGAGGAAATCTGACCATTTTGTAATTAGAAGACAAAGAAGCTGGGTTTTTGAAATTAAAGGGCTTTTTGGACGTTGGAAGTCTTGTGAACATTTTTATACACTTTGTAAATTTGGGGAAGCAGGGAGTTTGCATCATGAAAGAGCTTACGAAATCACTTGAATCCAGGACTTGTTTTGGCTTTGTTATTGACCCTTCGGCAAAAAGCTTTTATAATTCAAGCGTTTTTATACTCTTATTGGGGAAATAAGGCAAAATCCCGCCCT # Right flank : GACAAACATAAAGTTCTTTAAGAGAAATTTTGCACCCAGTAGAAAGACTAAACTGTTCTCTGATATTAACAGAAAATGGAGAAAACCTTAAAGCTTTTCAGTGTGCAACATATGAAATAAAACCCACCGGAGGGATGGCAATGTTTGACGTGGTTGCAATAGGGAACCTCAACTACGACATAATAATGCTCGTTGACCGCTTTCCGGAATTCCATGAAAAGATTCCAGCAAAAAATGCCCACTTTGGACTTGGAGGAGCCGCTGGAAACACAGCAACATGGTTAGCCAATATGGGCCTTAGAGTGGGGTTCATAGGGGCTGTAGGAAAAGACGAAATTGGAGAAGCACACATAAACTTCTTCAAAAAGATTGGTATTGACACCAAAGGCATAAAAATTGTTGATGTTCCTTCAGGTGTTGCCGTGGCAATAATAAAGGGCGAAGATAAGAGAATTGTAAAATACTTAGGAGCCAACAAATACAGAGAGCTTGACTATGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 1532070-1530305 **** Predicted by CRISPRDetect 2.4 *** >NC_014804.1 Thermococcus barophilus MP, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 1532069 30 100.0 41 .............................. AAAAGAAGACTCTTTATGATGATGGAACCGATCAGGTTCCA 1531998 30 100.0 38 .............................. AAAATTCGCATTGAGGTGAGGTTGCAATGATTCTCAGA 1531930 30 100.0 38 .............................. GCTTTTTTGCCCACAAGTGAGCCGACGATGAATAGTAA 1531862 30 100.0 39 .............................. TTTTGCCGTGTCTAATGCTGTCTCAAAATCATCATAAAA 1531793 30 100.0 39 .............................. CTGTTATATTGACAAATGTTGTATTGAATACTTCGAGCA 1531724 30 100.0 41 .............................. ATTGTGAATACTATTCCAAAAATGAGAACACCAATGTGGAT 1531653 30 100.0 37 .............................. ATGAGGGCAAATTCTTCTTTGTAACTACAAACGGAGT 1531586 30 100.0 37 .............................. TGATGCACGCAGCTATTACCTCAATCCAAGCTTGCTC 1531519 30 100.0 39 .............................. ACGACCATTGCTCCGCTTTCAACCGCTCGATTTCTTCTT 1531450 30 100.0 38 .............................. TTCGAGTTCTTTTTTCCACGAAAAGGATCGGCTTGGAA 1531382 30 100.0 37 .............................. TTGACGACTTACGAGCACACTTTAATGGTGGACATCG 1531315 30 100.0 44 .............................. CAATCATCAAGCTGAATTGGCAAGGCAACTTTACACTGAGCAAA 1531241 30 100.0 45 .............................. TGCATCCGCCGGTATCCAAGGCTCAACTGTGAGCGCATTCGGCGT 1531166 30 100.0 38 .............................. GATATCCCAGATATTAAGCTGCATCCTAAGAGGATTAT 1531098 30 100.0 40 .............................. TAAAAAAACGCTTCTTCTTCTTGGTCTCTTTCTGGGTCAA 1531028 30 100.0 39 .............................. AAGAAATAAAGAAGGAGCGTGATGGTCGTGGCTCTTGAG 1530959 30 100.0 39 .............................. GGCTTAGCGAAAAGTCAGTTACTCAAAGCAGTTACCAAG 1530890 30 100.0 38 .............................. TTGCGACCCAATACGGCCCTCCAGCGATCCAAATCTGC 1530822 30 100.0 36 .............................. ATCAAAGATGCGGCAATAGCTAAGCATATCTTTGAA 1530756 30 100.0 39 .............................. GTAGTCACTTGTTTAACATATCCAGCCTTCTTCAGAATG 1530687 30 100.0 37 .............................. CCCTAACCGCTGCAAGTGCTGACGCTACTAATACAAA 1530620 30 100.0 40 .............................. AGATTATGCCAAAGAGCATGATTGTTGCTCCCCAAATGAT 1530550 30 100.0 36 .............................. GCGGCTTTATCGAGAATAATCTTAGCATTTACGACA 1530484 30 100.0 52 .............................. TTCTGAAAGACTTAGCTACATCTATTAAAAAGTGCGTCCTAACAAACTGCAA 1530402 30 100.0 38 .............................. CTTCCAAAGTAGCCTTAACCGTATCAGCCACTACCTCT 1530334 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ==================================================== ================== 26 30 99.9 39 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GGAGAGGAAGGGGTGATTCTGAAGATTTTTCGATTTTTGTTGATTTTTCTGTTTTTGTGGTTTTTGATTTTTTGCAGTCTTCTTTTCTGGAATACTGCCCTGAGAGTTGTTTGGAGATTTTTAGTAATTATTTGTTATTAAATTACTTTATGTTACAAGTTTTATTGAAATTGTAACGTTTTGAATGTACATGTTTGGGTTTGGGGTTTTTGAGAGCTTCTTCTCATGTTCTCCTTATGGAAAATTGACCATTTTAAAATTAGAAGATGAGGAAGTTGGATTTTTGGGTTTTAATGCTTAAAAAGCCATTGGAAGTCTTATGCGCATTATTGTGCACTGGTGGCTTGGAGTTGTTGTGGGGTTTATCTGCCATGATATGGAGTGAAAAACCCTTGAATTCAAGGCTTGCTCTGACTGCATTACTAACCCTCCAACAAAAAGCTTTTATAATCCAAGCGTTCTTATACTTTTACTGGGGAAATAAGGCAAAATCCCGCCCT # Right flank : TACTGCTCTGATTGTGCAGTCTTGATCTGTTGGACAATTTCAATAAAACTTGTCTGTCTAAATTTCTCTTCTTTGACAAAGAACAGCCAGAAGTAGTGATGGTGGGGCCGCCGGGATTTGAACCCGGGTCCCCGGCTCCCGAAGCCGGAAGGATAGGCCAAGCTACCCCACGGCCCCTCGAGAATGAGGTTTAAAGAAAGTGTTATAAAGATTTCGCAACGAGAAATTGGACAAGGAAGGGATTGTCATGATCTCAATCATAGTCCCAACGTACAACGAGCGGGAAAACCTTGAGGAGCTTGTGAGTAGAATAAGCAAAGCGTTGGAGGATTATGAGTTTGAAATCATAATCGTTGATGATGATTCTCCAGATAAAACATGGGAGAAAGCTCAAGAATTAGCGCAAAAATACCCAATTAGAGTTATCAGGAGGACAAAAGAGAAAGGTCTCTCTTCTGCTGTGATTAGAGGATTTAAAGAGGCCAGGGGAGATATTTTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], //