Array 1 1257603-1260795 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024697.1 Prevotella intermedia strain KCOM 2836 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1257603 47 100.0 30 ............................................... AAGCGAAGATGAAGCCCTAACAGGTGAACA 1257680 47 100.0 30 ............................................... TACAGGAGTTGGAAGCATTTCTTTGGGCAA 1257757 47 100.0 30 ............................................... GGCGTGCCATTCATTCCGACCGAAATTACA 1257834 47 100.0 29 ............................................... ATACCAACTTGCCGTAAATTTGTCTTTTT 1257910 47 100.0 30 ............................................... TGCGAACTTCGGATAAATCTTATAGTTACC 1257987 47 100.0 30 ............................................... GTATTATATCAATGCAAAAAGGGTGTGTTC 1258064 47 100.0 30 ............................................... TAGCGTATTTTTGAGCTTCTTCTAAAGTTG 1258141 47 100.0 29 ............................................... CTTTACGAGCGATGTAGACTTAATGCTTT 1258217 47 100.0 30 ............................................... TTATAATGACGAACATTTGCCATATTTTTA 1258294 47 100.0 30 ............................................... TCAAGCCTTGAACCCTAATATTTTAGGTAT 1258371 47 100.0 30 ............................................... CAGGAACGTATGAATATCAATGTGGTAGAG 1258448 47 100.0 29 ............................................... TGTGTCGTTGCACTTCCAGTAGTCAACCA 1258524 47 100.0 30 ............................................... CCAGTCGATGACCGTTTCCTTTCAAAACTG 1258601 47 100.0 30 ............................................... ACTGTGCGTTTTAGGATATTTGCCGCTTTT 1258678 47 100.0 30 ............................................... TCGGCAACGTTCATGTATATGAGAATAATA 1258755 47 100.0 29 ............................................... CAAAATGGATTGATGTCCTTTGCGTACTT 1258831 47 100.0 30 ............................................... TTGTTGATGTAACGTTTGCCGAACGTGATA 1258908 47 100.0 30 ............................................... CGGACGTTACATAATGCCCGAATTTGACGT 1258985 47 100.0 29 ............................................... TCTCGTTTGAGGACACGGAAACACTCTTT 1259061 47 100.0 30 ............................................... TTATTACATCGTCAAGGGCGAGATGAATGT 1259138 47 100.0 30 ............................................... ACATCATTGATATAAAGATTACCAATGGTG 1259215 47 100.0 30 ............................................... TCGTATTCAACGTGTATATGGTCTTTTTCC 1259292 47 100.0 30 ............................................... TTCTGCATTATAAAGTTCTTGCTGCGAAGC 1259369 47 100.0 30 ............................................... ACTCGTTGCGTTGTCAATGAATTTCACCGT 1259446 47 100.0 29 ............................................... AAGTTGTAAATAGGAATTGGACGCACCTG 1259522 47 100.0 30 ............................................... CTTCAAAGAGTGTGTTGCCAAAGGTATTTT 1259599 47 100.0 29 ............................................... AAGTCGCTATTATTAAAATCGAGTTTTAA 1259675 47 100.0 29 ............................................... ACTGGCGATGTGTTTCGGAAGTTGCACAA 1259751 47 100.0 29 ............................................... TTAAAAGTTCACCAGAACCACCAAGCAAA 1259827 47 100.0 30 ............................................... ATGAAGATTTTACAAGACCCTTCTGTCTAC 1259904 47 100.0 30 ............................................... AAGGCTTCTATGTTGCGCTTATCGACTCGT 1259981 47 100.0 30 ............................................... GTAAATACACGGAGGTTACAAAAACACTTA 1260058 47 100.0 30 ............................................... TTGTAGGGCTGCTCTCTACTGATACGGTAA 1260135 47 100.0 30 ............................................... TGTGTCTATAATGAAAGCACTCGGCGAACT 1260212 47 100.0 29 ............................................... GCGCAAAGTCGGTGCTTGATAGCGAACGT 1260288 47 100.0 29 ............................................... AACAAATTTAACTCAAACTTCACACGGGC 1260364 47 100.0 30 ............................................... TACGAACCCTATACATTACAGCGATTTAGT 1260441 47 100.0 30 ............................................... CCGAAGACTACAACCCATTGACAGACCTTA 1260518 47 100.0 30 ............................................... AAGAACTTGCCGCCGAAACAAAGACGCTTT 1260595 47 100.0 30 ............................................... AAGTCGTTGGCACTTACGTTGTAGAACTCT 1260672 47 100.0 30 ............................................... CCTTCAGGCAATTCGGCTCGCAAGCGTGTG 1260749 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 42 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : CGTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGTCTGAATATTCGTTAAATCGACTCCGCGACTGTTAAATTTCAAAGCCCCAACTTCCGAATTACGGGCACTTTTCTGCACTTCAAATTATTTATTTGCAAATAACGTCATTATTTGCGTGCTATCGTAAGTGCTTGACTCATAGTTTCTTGCAAGCTTATTGGGTAGTGTTGTGCAACGAAATTACACTTTTTACGTTGTAAAACGAACACTTTTATTCGTATATAGGTTATATTTCTCGCTCCTTCATCATCTTTTCGCTCTGTAAAAGTGCCACTTTTGCAATCCAAAAGAGCCGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCCACCCCTATTTTTCCTCTCTCTTTTCTCTATTTCCCCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : CTCAAATGGCTTAAAGTAATTAACATCAGTGTTGTTACGAAAGCTTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCTGGAATAAAGGTGGAAACTCTTTTAATATGCACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCAGGATAAACCATTCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2260123-2260948 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024697.1 Prevotella intermedia strain KCOM 2836 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2260123 36 100.0 29 .................................... TTTCCTCAAATAATTTCCTGTGCCTACGT 2260188 36 100.0 30 .................................... GGTGAATGGAATCTAACTTCTCGATTTGAC 2260254 36 100.0 30 .................................... TTAGGCTTGGAGCTTACAGACGGGCAAAAA 2260320 36 100.0 29 .................................... TGGCGACGGAAAAACAACAGCGTAACTAT 2260385 36 100.0 30 .................................... TTCCTGTCTTTTGTTATGCTTCTAATAGTT 2260451 36 100.0 31 .................................... TTATTTCCTGCTTGACTATACATTCCTTGGT 2260518 36 100.0 30 .................................... TAAAGCGTTTTACCGTCGTTACGACCAGTA 2260584 36 100.0 30 .................................... CTCGGTCGTATGCTGTTTAAGCAAGAAGAG 2260650 36 100.0 30 .................................... TGCTTCACGCAACAATAGCACCTGCTTGTT 2260716 36 97.2 30 ...................C................ TTTGTATTTGGCTTTCTGTCAATGGTTTCA 2260782 36 100.0 29 .................................... TAACTTTCTTAATTGAGCGATACTAAGTT 2260847 36 100.0 30 .................................... AAATGTGATTAAAGGTTTCTCGGTGCTTGT 2260913 36 94.4 0 ..........................C.C....... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.4 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TGCGGAATGCCTTTTCGCACAACCAATATCCAATGTACAATGAAAATCTCTTCGGAAATATTGAGCGGTTCAGCCTTTCTTCTTCTAATATTATAGAAAGTAAGGGGCTCGATATTGCTGTGAAACTGAAAGAGGAAGTTAGTAAGGCAGTAGAAAAAATACAGAACGAGGAAGACGACAAAAAAGAAAAAGAAACTTAAAAACAAGATTATGGATAGTTCACTAATATAAAAAGGGGGCAATGTCGCTGATATTGAATACAGCAAGCACATCTATGTGCTGTTGCTTACTGCGAAGGACAAGCCCGACGAGACGATAGAAATAAAGAATGAGAAGCTTGGAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGGTGGTAAAAAGAAAGGAACAAAACATATAAAAATCAGACAGTTAGGTTAGGTGC # Right flank : CTTATTAACAAGCAAGGGAATGGAATTGGGGGAAGTAAAAACGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACCACCTCGTTATCAGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAAGCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAAGTGTAGAGGTTGTGGCGTGGTTTCGGACGGCAGCACAATGGTGGCTTTGCCGATAGTGCGACATCGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCGGTTGGCTTCGGTTGATGTGCAGCGACGACAGGAAAGCCACTGTACAGAGCAAGATAAGATGTTTTCTCATATCGTTAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //