Array 1 262065-263618 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTI01000001.1 Escherichia coli strain MOD1-EC6739 MOD1-EC6739_1_length_379788_cov_30.0425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262065 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 262126 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 262187 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 262248 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 262309 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 262370 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 262431 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 262492 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 262553 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 262614 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 262675 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 262736 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 262797 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 262858 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 262919 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 262980 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 263041 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 263102 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 263163 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 263224 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 263285 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 263346 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 263407 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 263468 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 263529 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 263590 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279120-279759 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOTI01000001.1 Escherichia coli strain MOD1-EC6739 MOD1-EC6739_1_length_379788_cov_30.0425, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279120 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 279181 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 279242 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 279303 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 279364 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 279425 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 279486 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 279547 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 279609 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 279670 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 279731 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCTTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGAACTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //