Array 1 18183-16762 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKS010000020.1 Neisseria meningitidis strain 107040 NODE_20_length_40821_cov_39.745935, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18182 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 18116 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 18050 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 17984 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 17918 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17852 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17786 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 17720 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17654 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17588 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 17522 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 17456 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 17390 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 17324 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17258 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17193 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17127 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17061 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16995 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 16929 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16863 36 100.0 30 .................................... TTCTTAAACTCTACATTGACGGTTTCAGAC 16797 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //