Array 1 17642-20148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIS010000030.1 Phocaeicola vulgatus strain MSK.17.67 NODE_30_length_67757_cov_159.875, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17642 47 97.9 30 ...A........................................... ACTTGCATTCTTGGCTATTATCAGGCTGGT 17719 47 100.0 30 ............................................... CCTCGGGTGTACGCTTAGCACTCGTTACTG 17796 47 100.0 30 ............................................... CGTTGAGGTTCCCGTACCTTCCAAGATTAT 17873 47 100.0 30 ............................................... TTGTTTATCTATCACCTAAACAGCTTGTTC 17950 47 100.0 30 ............................................... TGTCAGCCGGATATATCAAAGGACTTGTGC 18027 47 100.0 29 ............................................... TACAATGAGGATGATGTTTGCCAATGCTG 18103 47 100.0 30 ............................................... GTTTTTCAGGTAAGAGCATATCCCGTGATA 18180 47 100.0 30 ............................................... ACGATAACAAGTGCCAAGCGCTCTATTTCT 18257 47 100.0 30 ............................................... CCTTCAAACTCAAGGCGCTTTGACAGAGAA 18334 47 100.0 30 ............................................... ATTAACGATTTAAAATTATTATGATTATGC 18411 47 100.0 30 ............................................... AGCAGCAGATAAGGCGCCAATTACAAGTTT 18488 47 100.0 30 ............................................... GAGAAGCCTTGTACAACTTAACTTTCTCTT 18565 47 100.0 30 ............................................... AGTTTGCACCAACCCAACCATTTGCAGTAT 18642 47 100.0 30 ............................................... TATAGTTTAAAACGTCCTCTTTAATTGCTT 18719 47 100.0 29 ............................................... CCGTAAAAATAACTAAACTCGAGTATGGG 18795 47 100.0 30 ............................................... GTTTCATTATTTTTCATAAGTCTAAATTTT 18872 47 100.0 30 ............................................... CCGGCGAGAATATATTACACCAAAGTTTTC 18949 47 100.0 30 ............................................... TTATAACGGCACCAGGACGCAAAACATAAT 19026 47 100.0 30 ............................................... GTGACAATGATTATAGAGTTTGGAGAAATC 19103 47 100.0 30 ............................................... GCAATGCGTGTACCTGTATACTTATTCGTA 19180 47 100.0 30 ............................................... TACTAAATTGAACTACTTCTTTCCAACGCT 19257 47 100.0 29 ............................................... AATATGTTCATTATCATAAGTAAGTGTAA 19333 47 100.0 29 ............................................... TGAATTTGTTGGTAATCTTGGTTTAAGTA 19409 47 100.0 30 ............................................... GTAAGGTTTGCAGCTGAAGAAGCTATAGCA 19486 47 100.0 30 ............................................... GCAGGAGCCGTTGCCTTGCGCGCGGGGCGC 19563 47 100.0 30 ............................................... TAAGGCTAATCCTATTCTTACTGATGATGA 19640 47 100.0 30 ............................................... AATTAAGCGAAGCCCCTAGTTGTGTGCGAA 19717 47 100.0 30 ............................................... CTGTAAGAGCAAACTCCGCTACGATTTCAC 19794 47 100.0 30 ............................................... TTACAACTCCATTCAGCATATCACTCACCA 19871 47 100.0 30 ............................................... TAAAGAAACAGTCAGTATGAAAACAATCAG 19948 47 100.0 30 ............................................... TCCTTTCTATTTAATCGAGTTCGTTTACAA 20025 47 100.0 30 ............................................... ACTACTGCCTCTCGTGAAGTGACTGTAACC 20102 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 33 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTCTGAAACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //