Array 1 28004-29695 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000048.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_48_length_29852_cov_73.1461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28004 30 100.0 36 .............................. AGTCAATCCTGCGCCGGACCATAGCCAGGGTTACCA 28070 30 100.0 37 .............................. TTGTTTTGGTTGCAAATGGTGTCGGAGGCCCGACATA 28137 30 100.0 37 .............................. AGAAGAAGGTAGTGAAGCCCTATGGTCCAGTATCCTG 28204 30 100.0 37 .............................. ACCCGCCATGGAAGTGGGACGGCGTCACGGTTACACC 28271 30 100.0 35 .............................. GTGAACGGGTGGCATTCGCCCCCGGCGCGGTGGTG 28336 30 100.0 36 .............................. ATTTGGGCGCGGGTACGTCCGGCATGGTCGAAGGGG 28402 30 100.0 36 .............................. CCGGTAACGGCATATACAACAACGGCATCGTTTTTT 28468 30 100.0 37 .............................. GCAACCAGGTGGGGTGGTAACAGGTGGTCCAGTCCTC 28535 30 100.0 36 .............................. GTCCACTTTTTCATTAGTGCCCCCTCCTTTGATTCA 28601 30 100.0 36 .............................. ACATGTCAATAGGTATTTGTTATGATGTAGCCAGAG 28667 30 100.0 36 .............................. GCCAACCTCCTGGCCGTCCAGTACGACTAGGATTGG 28733 30 100.0 36 .............................. AGTGGATTAAGCGGGCTCGCAGAGTACTGGCCAAAG 28799 30 100.0 35 .............................. AAGGAACATCGGGAAACCTTACTGCACTTATATCA 28864 30 100.0 36 .............................. ACAGGTGTTTCGGGGTTACTACGAGTACGTTAGAAT 28930 30 100.0 37 .............................. GGCATTTTTCGGCCAGGCGGTATTGGTGGTTGGCATG 28997 30 100.0 38 .............................. ACCGTACCACCGGCCATAAATCCAACCAGCACCCACCA 29065 30 100.0 35 .............................. GGGCTTGCACCCCAACCGGGAGTTAAATATTATTT 29130 30 100.0 37 .............................. GAATTAAACTCTTTTGCCTGGACGGACACAATGGTTA 29197 30 100.0 38 .............................. CGGAAATTGTGGTTATTTTGCCGCCGGGCTGTGCTTCC 29265 30 100.0 36 .............................. AAAAATGTCACCGCCGTATTGCCCTTTTCCTCCTGC 29331 30 100.0 35 .............................. TTAGCGAAGGTACCGGATTGAATTGTTGATTATAC 29396 30 100.0 38 .............................. CAAAGGGCAATTCCTATATATTCACCGGGAATGTCTAC 29464 30 100.0 37 .............................. GTCCGATGACCCTGGAGGAGAAATTTGAAAAGGCCTT 29531 30 100.0 39 .............................. TGTTCCCAAACCTGAATATCTGGACCGGGACATTTTTAA 29600 30 100.0 36 .............................. CCAACGCTTTGTTCGCTGTCGGGGTGTACAGCACAT 29666 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 100.0 37 GTGCGAAGCCTACCTATGAGGAATTGAAAC # Left flank : AATAATGGTAGTGCCGCCGGGTTTACGGAGGTAATTGGAAATGTATATCATTCTGGTATATGACGTGAATGTATCACGGGTGGGCAAAGTGCTCAAAACCGCACGTAAATATCTGAACTGGGTCCAGAACTCGGTGCTGGAGGGCGAGCTCACCGAAGCCACTTTTCGTGCCCTCCAGATCGATTTGGAGCGGATTATCAATAAAGAGGAAGATTCCCTTCTCTTCTATGTCCTGGGCAACCAGAAATATGCTAAAAGGCAATTAATGGGTATCCAAAAAGGCGGTGAGCAATGGATCTATTAGCAGGATTTTTGTCGTCGATCGCCAATAATGTAATTATGGCGGGGGATCGACGACAGATCAATGGATAGTGCGGTAGACGGAAAGAAGGCGCCCGCCAAGGGCCGGGCCGTTTTTACTGCCCCGCCCAAAAAGATGATACCTTTGTTTGTAGGACCAGCCCTGAAAAAATGGGTCTTTATTAATGCGCCCTCGACGG # Right flank : ATAAGGACGGCAAAAGCTACGGCAGTGTGGCACTCAAGCCCCCTAACTGTATTGGACAGTTTGACTTAAATCTGTTACATTATGCAGTAGGGGGGTAGTCCTGAATGACTAGAAAAAAGTACTCACCAGAGCAAAAAATGCAAATTGTTAAGGAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 16214-19208 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000001.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_1_length_171750_cov_73.8658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 16214 37 100.0 35 ..................................... TGATGTATACTCCTTGGACCAGAAGCGTAGAAACC 16286 37 100.0 37 ..................................... TCCTGGCGGCGCACCAGAGCCCGACCAACAAGCAAAT 16360 37 100.0 36 ..................................... TGTACCTGGCGCAAACGGCGGAAATCGCCCCCGCGG 16433 37 100.0 35 ..................................... GCAGCGCCGGTTTTCCCAGGCCATCGGCAGCCAGA 16505 37 100.0 38 ..................................... TTAGTTGGGAACCACCGGCAGGGCTTAAAGCGGCGCTG 16580 37 100.0 35 ..................................... TCACAGACCAACGGCGGCTGGAACCAGGGCACCCG 16652 37 100.0 41 ..................................... TAACAATAAGACCAGCCTGGCCAGACTTTGCCGAATACCAG 16730 37 100.0 37 ..................................... CAACTTCTGGCCGTCGGCCTGGGGCTTCCAGTATTCA 16804 37 100.0 39 ..................................... ACAACTCTTCCCGGGTTACGGCATCCTTTGGCCTGGTGC 16880 37 100.0 41 ..................................... ACCACTATCAGCGCTGTACCAGACTCTTCCGCATCCCGGGC 16958 37 100.0 36 ..................................... CGAACCAACTCGCGTTTTTTGGTGTTAGCCCACTCT 17031 37 100.0 35 ..................................... CTATCGGGACCAATATAAAGCCTGGGCGAAGCAGG 17103 37 100.0 37 ..................................... TGTTCAGCGGATTAGTCCTCATAACTCCCCCGGCGAC 17177 37 100.0 38 ..................................... GAGCTTTGTATCGTCTAGTTTCGCGCAGGCAGGGTAAA 17252 37 100.0 39 ..................................... CTAATTCCCGTGCCAGTTGTCGCCAGAATTTGACCGCAT 17328 37 100.0 37 ..................................... TGTTCAGCGGATTAGTCCTCATAACTCCCCCGGCGAC 17402 37 100.0 38 ..................................... GAGCTTTGTATCGTCTAGTTTCGCGCAGGCAGGGTAAA 17477 37 100.0 38 ..................................... CGGTATAGGTTGTTCCAGGGGTAAGCCCGGTCAGTGGG 17552 37 100.0 39 ..................................... GACCGGCCAGAGGCTGTCGGTGTCCAAGGTAGCCATCAA 17628 37 100.0 36 ..................................... TGGAAGGTCCGCTTCGCGCTGCACCGGGGGATTGGA 17701 37 100.0 36 ..................................... TGGAAGGTCCGCTTCGCGCTGCACCGGGGGATTGGA 17774 37 100.0 35 ..................................... CCGCAGGGTCCTGCCGAGCCTTCCGTGAACCACGG 17846 37 100.0 38 ..................................... GGCAACCACCCGCACGTCAACGATGAACCGCATGCTGT 17921 37 100.0 39 ..................................... CCGGTTTGCGGGTAAGGCCATGTTCTTCTGCGCGGAGAT 17997 37 100.0 36 ..................................... ATAGTAATTCGTAATGGTCCACTAATTTCTACGCTA 18070 37 100.0 38 ..................................... GATACCTTCAGGCCCACGGGCAGGCGTGCATTATCAAG 18145 37 100.0 36 ..................................... CCGAGTGGTTGCACGAGCAGGCCAGGCCACATCAGC 18218 37 100.0 35 ..................................... GTCAGTAACGCCAACCTTTTCTAAAGCCGCCGTAA 18290 37 100.0 38 ..................................... AGTTTCAGATCGCCGAATTTCTCTGGCGGCATTGCGGC 18365 37 100.0 36 ..................................... CCTGGGGATCGAGGGGGCGACTGCAGAGGTTGAATT 18438 37 100.0 37 ..................................... CGCCCAGCTTGTCCCGGATGCGCTGTTCCCAGCCCAC 18512 37 100.0 35 ..................................... GCAAGGGGACTCCAGCGTCCCGCAGTTCCTTAGCA 18584 37 100.0 37 ..................................... AATGAGCGGGCAGCTCCAGCTCCCCCCGGACTATTCG 18658 37 100.0 35 ..................................... GAGTACAGCGAAGCCTGCAGTACAGTCGGCAAGAG 18730 37 100.0 39 ..................................... AAATTCATCCTTAAAAGCCCGTAGAGCCGCCTCTATTAG 18806 37 100.0 36 ..................................... CTCATAAATTCTATTTAATCCCTCCATTCATCGTAA 18879 37 97.3 37 ..........T.......................... CTAGCCGGAAAGGTTTCTATCAGGTCCAAAAACGTTA 18953 37 97.3 38 ..........T.......................... TACAGGTCCTGACCGTAGGGACGCACGGGCAGCCCGGC 19028 37 97.3 35 ..........T.......................... TGAATAAGAGGGACATTTCCGACCGGACGGCCACC 19100 37 100.0 35 ..................................... GAAACAAACAAGCTGAACCCGGAGGACCTAATTAA 19172 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 41 37 99.8 37 GTTGCACCCACTGACCCGACGAAAAGGGGACTGAAAG # Left flank : CGGTTATCGTGGATTTAAAGTTCGGGCGCCCGCAGCCTTTTCACCGGTTGAATACCACCGGTTACGCCCTGGTTATGGAATCTTTGTATGAATTTCCGGTCAACCTGGGGTGCCTCGTTTATGCCGAGTTCAAAGACGACAGGCTGCTTGTAAGGAAAGACCTGCACATCATCAGCGACGAATTGCGCCAGCGGTTCTGCGAAGTACGGGATGAAAAAGCCCGGCTGGTGGCGGAGGAAATTGATCCGGGAGTGCCGGAAAACTGCCCCGCCTCATGCCCGTATTTTCCTTTTTGCCGGTAATAAATGTATCCGCCGGGGAAGGTATTTTTCCCCCGGCGGTGAAATGAATGTCAGGTGGATAACTGGCTTTGTGATCATTTCGCAAATACCCCCGGCTTTCGTGCAGAAAAACCATTTTCGAAAAAAATGCTTTCCTGAGCCGCATCAGAAAGCCGCCAGCCCGCATAACAGCTGGATTTTTTCTGGCCATCGCGGTCG # Right flank : GCCAATTGTCAATTCTCAAAATAAACCGGAAAAAATTATCATATTAAATTAGGTCAGCCAGCCACAAAACCTAAGAAATTATCACTTTAAAAAGGTAAACCCAAATACAATTCTCAAATAGCGTTGGCGAACAAAAAGCCGGGCTGCCTCATTTTTCAGGCACCCCGACCAATTGTTCCGGTTAAAGCAGCCGCCTTTTTTTAATGGCCAGCATTTCGGCCCGGGCTTCTCCTAATTTTTCCCGGAACACGGTGGCAAACCAGGTAGCCCGATTTTTTGTCGGCGGGTAATGCCTGGCCTTATCGGCCACCTTGCAGACTGCCTCAATCATTTCTTCCGGGCTGTAACCCAGCTCTATGGCCAACTCATTGCTGCAGGCAACAAATTATAAAAACCTGTGTTGGCAAAGTAGTAATTAAGACTATGCAGACTATCTCCTTCAGGCACACTTACCGCCCCCTGCCATCAAGTTTCCAGTTCCTGCTGGGCCTGGTAAACCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCACTGACCCGACGAAAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 2140-3031 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000065.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_65_length_14693_cov_82.1574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2140 30 100.0 36 .............................. AGTTCCTTTCCCGCCCGGTGACAATCTCCCTACCCC 2206 30 100.0 36 .............................. AGGAGGGTCAGGTGATTGACACGGTGGTCAGGTCCG 2272 30 100.0 35 .............................. ACCGGCAACAATCCGTTTCTGGTTGCGATGGTGGA 2337 30 100.0 37 .............................. AGAACATGACCACCGGGGTGGCCGCTTCCTGCCTGCC 2404 30 100.0 37 .............................. AGAACATGACCACCGGGGTGGCCGCTTCCTGCCTGCC 2471 30 100.0 36 .............................. AGGAGGGTCAGGTGATTGACACGGCGGCCATATCCG 2537 30 100.0 36 .............................. CAAGAAGACCACCTCCGGAAGGAATGGTTACTCATT 2603 30 100.0 36 .............................. CGCCACTGGCTCGTCCCGGGCCCAGGCGCCCGCAGT 2669 30 100.0 36 .............................. CGGTATAGCCAGCGTGCGGGCACCCACAGCAGGTAA 2735 30 100.0 36 .............................. AATCCGCCTGGGCGAAAAGGCCCTGGCCCAGAGCGG 2801 30 100.0 35 .............................. GATTTTGGAAAATGGTTTTCACGGGGATTTTCGGT 2866 30 96.7 37 ...C.......................... AACCTTCCGGGGCGGGCCGGTTGGCGCGGCCCAGAGG 2933 30 100.0 36 .............................. ACGAATAAGGAGGTGATACCCATGTCCCTTCCAGCC 2999 30 93.3 0 .........................CC... | T,C,T [3019,3021,3023] ========== ====== ====== ====== ============================== ===================================== ================== 14 30 99.3 36 GTGTGAAGCCTACCTATGAGGAATTGAAAC # Left flank : ACGGCATGGTACATTTTGTCTGATTGCTGGGCTGAACATCGCCACCGGAAAAGTTTTCGGCCAGTGCTACGAGCGCCATACAAACGTAGAGTTCCGGGATTTTTTAGAGAAGTTGCTGGCCTCATTTGCCAACCAGAAACTTTATATCATTTTAGATAACTTAAAAACCCACCTTCACAGCAATGTCCAGGAGTTGGTAGCTAAGCACAACATTCAGTTGGTTTTTCTTCCATTCCATGGCTCCTGGCTAAACCAGATCGAAATCTGGTTTAGTATTCTAAATGGAAAGTGCATCCACCGTGCTGATTGGAAAAGTATTGCAAAAGGCATGGATGAGGTAATGAAATTTATTGTTACCTGGAATGAGAACTGGGCACACCCTTTTAAATGGAAATTTACAGCTGACGATCTCAAGAAACTACTGGGCGTTGAAGAACAGATTAAACTGCCAAATTCAGCCTCTTTTATGGCGTGAATTTATGGGTCACGGTACTAGTTTA # Right flank : CCGAAAACGACCACCCATTCCAATCTAATCCGACCACCGCTTCCAATCTAAATCGACCACCCATTCCGAAGTAAACCGTCCATTCATTCCGATTGATTGCGACCACTTTTGCCAACTGGTTGGAATTGGTGGTCGTATTGCCAGGAATTAGTGGTCGCTATCTTTCGGAACGAGCAAGCGGCGCATAAGACAACGAACCAAAGGAATTTTCCTCCTCCCCATTAAATTCAAGCAATAAGACTACCAACGGGAGGAGGAGACAATGCCCAGAAGGAGGTTGTCTATGCGCAAGATCAAAGAAATTTTACGGTTAAAATGGGAACTCAATTTGGGTATCAGGCAGATCGCCCGCAGTTGCAACTTATCCCACAGCACGGTCAGCGAATACCTGGCGAGAGCCCAGGCGGCCGGGATCACCTGGCCGATTCCCGTGGATTTGGACGACACCGCTTTAGAAAAACTGCTCTTTCCTGGGAACAACTCCGCCCGGCGTTTTTCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 30-6327 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000088.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_88_length_6499_cov_99.0303, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 30 30 100.0 38 .............................. TCTATACTGGATCTGATGTATTGTCTAATCCTGCTTGG 98 30 100.0 37 .............................. AGTCTATTCATTATTTCCCCAACAAATCGATCGCTAA 165 30 100.0 41 .............................. AATATCTTTTGTGCCCTGAACGCGCTTGACGCGTAAGGACG 236 30 100.0 38 .............................. ACGGTGGAGAGGTGAAAGGGCGTATTGGGGGATTGCGT 304 30 100.0 36 .............................. CATCCACAACGGCGGCAGCTGTGGCGGCAAGAACAA 370 30 100.0 38 .............................. ACAATACGCCATCCTATTACTGTGAGAAGTGGGCTTAC 438 30 100.0 35 .............................. TGGTATGATAGCCTTGGGGTTATTCTATTTACGAA 503 30 100.0 37 .............................. ACTAAAATCCTCTCGATCTCCAAAAACCTTGATTTTA 570 30 100.0 37 .............................. TGGATTAATTCTTACAAAAAACATCTAAATATTTTTG 637 30 100.0 35 .............................. AATAATGCATGTGTCGTAACAATATCACAACCTCT 702 30 100.0 36 .............................. TTATTATATTGCATTTATCTTTTTGCTTATGTTATT 768 30 100.0 35 .............................. TCCTTTGGGAGATATCTAGCTAGCTTGCTATTAGG 833 30 100.0 34 .............................. TAGCCCGCGTGAGGAGTTCACCCATCCCTGTTTC 897 30 100.0 35 .............................. GCTGATTGCCGCAGGGTCTCTTTGCCCTCGTTATA 962 30 100.0 35 .............................. TTGAACTGGTGCAAATGATGCCGGTTATTTGAAAA 1027 30 100.0 36 .............................. CATTCGCGGTCCCCGTGATGCTGGCGTTTACCGCCG 1093 30 100.0 38 .............................. GCCACCGACACCCGGGGGGCGGGCGGCACGGCCAGGTC 1161 30 100.0 38 .............................. GAATAACCCCACCGAATATCCGTATTGTTCATCGCCGA 1229 30 100.0 38 .............................. GGAGGTATCACCATGCGGAAGAAGTTGTTGAACTTCGC 1297 30 100.0 35 .............................. TCACGTCCATGCTGTACCACCCCACGTCAGCCGAC 1362 30 100.0 37 .............................. CTATGAAAATTACCAACCTTGGAAACGGAAGAATCAG 1429 30 100.0 37 .............................. GAAATAATTGTTTCATCCTTTATATAATTGTAAATAT 1496 30 100.0 37 .............................. GTAATTGATTTGTCTGTTATTTTGCCTGATACAATTA 1563 30 100.0 35 .............................. CTGTGAGAGGCGGGCGGGTGGCCCGCCTTACCGAA 1628 30 100.0 36 .............................. TACCTCCCTGGAGCAAGGTATTTTTGGCCCTGGAGA 1694 30 100.0 38 .............................. AACCGCTCATACACTCATCAACCCGCCCGTCCGGCAGC 1762 30 100.0 36 .............................. CTCTGATAATTGGTCTTTTGCCGGGAATATTTTATT 1828 30 100.0 37 .............................. ACGCAGAAACGGTACCCGGCCGGGTTGTCCTGGCCTA 1895 30 100.0 36 .............................. CACACTTCTGCCAGCCCAGTGACTGCCCCTATCGTT 1961 30 100.0 37 .............................. ATCATAATTGAGGTCAATGTGTTACCGTATTTTTTGA 2028 30 100.0 35 .............................. GCAGAGATGCGGACGGATGACAACCCTGGATGTTT 2093 30 100.0 35 .............................. ATCCTCAGTAGTAAAGATAATAAGTCTTTCCTTCA 2158 30 100.0 36 .............................. TTCAACTCCAAACGTAATCCTGGAAATAAGATCCTG 2224 30 100.0 37 .............................. AAGTATGCCACAAACCTGTGTGTTCTCCTGTTTTCCA 2291 30 100.0 37 .............................. GCTCTTGGATAATTTTTTCATTTTAATTTCCTCCTCA 2358 30 100.0 35 .............................. AAAATAACCACTTCCAGGTCATGGCTGGATGGCCG 2423 30 100.0 36 .............................. AGAGATGGGAAAAGGAGGCTAAATAATGTCCAAGCG 2489 30 100.0 43 .............................. CGGCCAGGGCCGGTTCTTCCAGGTTGGCGTTTTCGGTATACAG 2562 30 100.0 37 .............................. TCCTGTCCCGAAGGATACATCAACCACTGCACATGGG 2629 30 100.0 36 .............................. GGCAAAAACCCCTTGACGGCTGGGTTTCGGGCTGAT 2695 30 100.0 38 .............................. TTCCTGAATCGGCCCGCCCACATTGCTGTCCGGATTCT 2763 30 100.0 37 .............................. TAGCACATTCCTCCTTTTTAATCCTCATCGCCATCCA 2830 30 100.0 35 .............................. CGATGTGTGATTGGGAGACCCCGATTTTTTCGGCC 2895 30 100.0 36 .............................. CCGGTAGGCCCGGGCTTCCTCAATGGGGTCCAGGTC 2961 30 100.0 35 .............................. CCCGGAAGATGATGCGGGAACTGGGCTGGCCGGAA 3026 30 100.0 37 .............................. CTCCACTCACTCACAACCGCCCAAAGCTTCTCCCTTT 3093 30 100.0 36 .............................. AATGTTGCAGTACTACGTCAGCCGTGCTGGTGGCTG 3159 30 100.0 36 .............................. GATAACGTCCTGGACCCGGGCTATGATTTGGCGGGC 3225 30 100.0 37 .............................. TGTGACCCGTACAACCGGCCCATTCTGAGGACCCTAA 3292 30 100.0 36 .............................. AGTTCTTCAGGAAACTTTTTATAGTAATCAAAATTT 3358 30 100.0 34 .............................. TTCCTTAACGGTATGGGAAAACCGGGCCAGGGCC 3422 30 100.0 36 .............................. ATACTATAGAAACATTTGGGTCTGGTTAAGGTAGAG 3488 30 100.0 36 .............................. GCCGAATATGAGGTGAGGCATTTTTCGGCCAGACGT 3554 30 100.0 35 .............................. AGAATGCTTTGCTTCTCGGCCTCTTTTTCGTTTAA 3619 30 100.0 36 .............................. TGCGCCTGGCCTTCATGTAAGCCAGCTCAAGGTTCT 3685 30 100.0 36 .............................. TGGACTGCCTGTCGGTGGGCTTCATCTGCCTGACTC 3751 30 100.0 37 .............................. TTCATATCCAGCAGCACCGCCAGGCGCTCCATGAGCT 3818 30 100.0 35 .............................. TTACACTCAAACCACATGATGTCATGATGTCATGA 3883 30 100.0 36 .............................. TTGCGTACCAACCACGCATGGCCGTGGTTGGTGCGC 3949 30 100.0 37 .............................. GTGGGAGGTTTCAAATCTTCAACATTGCAAAAGAGGC 4016 30 100.0 38 .............................. TAAGCTGAATCGTCACCATGTACCCACGCATTAAGAGC 4084 30 100.0 37 .............................. CTGGGATTCGTACTGCGCCCTTTGCAACGCATAGTTC 4151 30 100.0 37 .............................. CTGGGATTCGTACTGCGCCCTTTGCAACGCATAGTTC 4218 30 100.0 35 .............................. GCAATGGTAAGCGCTTTTATCTTTTGTTCCTCTGT 4283 30 100.0 38 .............................. CTGGAGGCGGCAGGGAGGCGGCAGGATGATAAGGCAGC 4351 30 100.0 36 .............................. TGCAAACTGGCGGGACTATTATATATGTGGTATAAC 4417 30 100.0 36 .............................. CCCGGCGGGATTGATCCAACCCGGGGAGCTACCAGA 4483 30 100.0 35 .............................. TCAAAATCCGCGTAGTGTTTCGCCAGGTGGTTATA 4548 30 100.0 38 .............................. CCGGCGGTGCCAGGTTAAGTGGGGCAAAGACTGCGTGA 4616 30 100.0 38 .............................. GTTCAAGTTCCTTTGGAAAGTCCCTGGCCGTCTTGTGC 4684 30 100.0 37 .............................. GACTTGGCGGCCGGGGTTTGTCCGTTTTTGATGGACT 4751 30 100.0 36 .............................. GGAGTGATTTAAGTGCAGGAATATATAGTTATTGTG 4817 30 100.0 38 .............................. GACAATCTTTTCATTCTTGTTTCCTCCTTCTGGAAATT 4885 30 100.0 35 .............................. CAGAACCTTCGTCAGGGCCAGGGTGGCGGCATCGA 4950 30 100.0 38 .............................. GTGGCGTAGAGGTCTACTGGATCGGCGAAGGCGAAGGT 5018 30 100.0 39 .............................. TCTTTAGCCCCCCGGTACGGTAACCCCCGGTCCCCCAGA 5087 30 100.0 36 .............................. GTTTACCGCTCTCTACCTTAACCAGACCCAAATGTT 5153 30 100.0 35 .............................. AGATAACCAACCAGGATCAACAAACCCAGGATAAA 5218 30 100.0 37 .............................. GAATACCCGCGTTTTGTTGTTGCTGTGCCTGAAAAGC 5285 30 100.0 37 .............................. TACTTTCACCAACCATTCCCCCTTTGATTTTGAATTG 5352 30 100.0 39 .............................. GGGGTGAAAACAAGGATGTTTTCTCTGGAGGAATTGATT 5421 30 100.0 35 .............................. CGGAGGGAATCTTCTCGCGCCGGGCGATGTCGTCC 5486 30 100.0 36 .............................. GGCACCGGGTGGCCGTAAACCGTGAAATGTATCATG 5552 30 100.0 39 .............................. GACGAACCATCCGAAATTTGGGCGCCAGTTCGCCTTTTC 5621 30 100.0 38 .............................. CTCCTTGTTTTACACCGTACAGTTCGATGAGTTTTTTC 5689 30 100.0 38 .............................. CTCCTTGTTTTACACCGTACAGTTCGATGAGTTTTTTC 5757 30 96.7 38 .................A............ AAGTAACAGGTTCCAGTGATGACCTGAGACACCTGTGA 5825 30 100.0 39 .............................. TGAAAACGGCGCTGATCAGTCCCCTTTCGGTAATCACCG 5894 30 100.0 38 .............................. GCCCCGGCATCCTGGACACCTTCCCTGACTACAAGGAA 5962 30 100.0 40 .............................. GGAGTAATTTCATGCCAGAAGTGCCACCGCAGCCTTTCCC 6032 30 100.0 37 .............................. TTTTCATATCATATATTTGACTTATATGAATCCCTTC 6099 30 100.0 39 .............................. GGAGGACGGGATCACACAGGATAATACCGCCCCTCTCCT 6168 30 100.0 35 .............................. AATATAACGACAGGGTTCCAGGACATGCTATTTCC 6233 30 100.0 35 .............................. TTCTTCCCGTATTCCTGCGTCTTTACCGCTACGGC 6298 30 96.7 0 ...T.......................... | ========== ====== ====== ====== ============================== =========================================== ================== 95 30 99.9 37 GTGCGAAGCCTACCTATGAGGAATTGAAAC # Left flank : GATCTGATGTATTGTCTAATCCTGCTTGGG # Right flank : CTGGATATGTTTACCAGATCTAGCCATTACCTCCAAGAGGTGCGAAGCCTCTCTCAGTAAGGTTGTAATATCTCCATTTATCTTGCGATATCAGCCAATTTCACTTTTTCTCAGGGAGATGAATGATAATAATAACCAGGTATACCGATATATGGCATGTGTTATCCATACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 6365-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000087.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_87_length_6503_cov_90.6183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 6364 30 100.0 36 .............................. CTCTTCAGCTCTTCCGGCAGGGGTTTCTCCCCACCG 6298 30 100.0 36 .............................. GTGGTGCCGGTCCACTGCCGCAGCTTGTCGGCGTGC 6232 30 100.0 35 .............................. CTTCCCCTTCCCGGTTAACAACCACTTCTTCCCGG 6167 30 100.0 37 .............................. CCCAAACTAAAACCCCCGGGCTATTCCCGGGGGCGGG 6100 30 100.0 38 .............................. CTTCATGTTCCCCCGTTTTAACGGCCAGGTCCTCATCC 6032 30 100.0 37 .............................. CCGGTCACGCCCATGTAAACCAGCACCGCTCCCGCCG 5965 30 100.0 36 .............................. TGATATAGTACCTTCACAAATAGGGTTATATGATGG 5899 30 100.0 36 .............................. ATTTTCCCGGCATTGCCCAGGAAGATGGCCGCTATG 5833 30 100.0 37 .............................. CCGGGCTAACCATGTATTGTGTTTTTGGACTTCGTAC 5766 30 100.0 34 .............................. CCGTCCGGGGGCTTAAACCGGCCACCGTGAACCG 5702 30 100.0 36 .............................. ATGCCCACGAAAACCGGGGGCTTTTTCTCTTTAGCA 5636 30 100.0 36 .............................. CACAAAATCCCCCTTCTGTACCTCTTCGATTTTAAC 5570 30 100.0 39 .............................. TCCTATGAACTGGAGGAAGAGGAAGAAAGTGAACATCAT 5501 30 100.0 36 .............................. AAAAGGGTGTTGACATGCACATGATGTGCGTATTAC 5435 30 100.0 37 .............................. TTCATTGCCGGACTCTTGTTATCTTTTCCCAGCACTT 5368 30 100.0 36 .............................. CCCCTGTCCCGCTTCGGTCGTGGTGGTGGGACCGCC 5302 30 100.0 37 .............................. GGTTGAACGGGAATTCCGGCGAAACGCTCACGTTTTG 5235 30 100.0 37 .............................. CGTGAAACACAAGCGCAACACAGCCCCGCCCAAACTA 5168 30 100.0 36 .............................. CCCAGAAGAGCCCGGGTGTATTCCAGCCTGTTTATT 5102 30 100.0 38 .............................. TAGTATAATATCCCTGAAGGGGGTGAACCGGTGGACCT 5034 30 100.0 39 .............................. CCTTGTTATTTCCGTGCCCACTTTGCAAACTCCTTCCCG 4965 30 100.0 36 .............................. CCAGCACCCCGCCGCTGTCCCTGATAACCAGGAGCA 4899 30 100.0 35 .............................. TACCTGGAAACGGTGGAGCTGGCGGAAGAAAAGCA 4834 30 100.0 35 .............................. CTCTCAGCACGCCACCTACCCTGCGGGTCGTAGAA 4769 30 100.0 36 .............................. TAAGGACCCACACGGACCCCTTCCACCGGTCCGGGG 4703 30 100.0 37 .............................. CTACCTCACAAGTATGACAACCATCACAGACACCGCC 4636 30 100.0 36 .............................. CTTGCTGGGAAACCGTTCTACGATCTCCCACTCAGG 4570 30 100.0 37 .............................. CAAGCCAGATCCAGATTGGTGCCAGTGCCATCGAACC 4503 30 100.0 35 .............................. CTTTTAGCCGGTTGCCATCCCCTGAAGTCTATGGA 4438 30 100.0 36 .............................. CACCACCTGCCCGGGCTGGTGATTTGACGTTGTCTG 4372 30 100.0 37 .............................. CAACATAGCCTGCGCCAGATAACTTTTTCCGCTCCCG 4305 30 100.0 36 .............................. CCGGAAGGGGGATGGCCGGAAGCAGCGGCGCAGAGG 4239 30 100.0 36 .............................. AGGATGACCGGTACCGGAAACAGATCATCAGTGCAG 4173 30 100.0 36 .............................. GCCATAAACCTGCTACTACTAACTACGGCGGCCCTG 4107 30 100.0 35 .............................. CAGAGCTCCTGCCCCTTCCGGTGCCACTCGCCCAG 4042 30 100.0 36 .............................. CCCCTTCCCTATCCGGTGCCAGAGGATGCAGTTCCG 3976 30 100.0 37 .............................. GCGGTAACTATATCCGTGAGAGCTTTCCACAATATAC 3909 30 100.0 36 .............................. ACCTGATTCAGAATTTGAACGTGCAGTTCAACGGAC 3843 30 100.0 37 .............................. TTGAAGTGGTGCAGGTAATCGCGCATGAAGCCGAATT 3776 30 100.0 38 .............................. TTTCTGAAAGCCTGCAAAGACTGGGGGGTGGCAACCGA 3708 30 100.0 36 .............................. CGTGTTTTATCTGGCCAAACTGGAGGACGCGAAGCT 3642 30 100.0 37 .............................. ATGGGGAAGCCCACCGGGAACCGGACGGGCGCAGCGT 3575 30 100.0 35 .............................. TGGCCAAGCGGCACAAGAATCTGTTCCTGGGGGCT 3510 30 100.0 36 .............................. GTCATAACGGCCCTTGACCCGTTGTTCGTGGTTATG 3444 30 100.0 37 .............................. CTCCCGGCGGCCCTCCAAATAACAGTCCCCGAATTTC 3377 30 100.0 39 .............................. TTTTTCCTTCTTTGGTTCCTCCACCCCCGGGCCTTCCGG 3308 30 100.0 38 .............................. AACTGGAAAACCGGGTGAAGGAGTTGGAAGGGAATGCC 3240 30 100.0 37 .............................. CCTGGAACTGCCCTTCACCCTGCGGAAGGATTTGCTG 3173 30 100.0 36 .............................. CGTGGGCTACGGAGTGAATTTCCCGGCCTGGCTGCC 3107 30 100.0 36 .............................. CCGGAAGAGCTGAAGAGTGATATGGCCCGGCTGGTG 3041 30 100.0 36 .............................. TATTTTTCCCCGTACCTGGGCCAGTATTTTGACCCG 2975 30 100.0 36 .............................. GTGGCCGGAAATGGAAAAGACTTTCCGCCCGGACCT 2909 30 100.0 37 .............................. ACTGGCTTTCCCGGCGGCGGTACGCATTGCTGGCCTT 2842 30 100.0 36 .............................. TGCCAAGCTGACCGATGACCAGCTGGACTGGCCGGC 2776 30 100.0 38 .............................. GCCCGCCGGAGCCGTAATCCCGGCTAATCTTCCCCAGG 2708 30 100.0 36 .............................. GTTTGGCGAATCCCTGAATCCGCCTTGCAGGAATTT 2642 30 100.0 35 .............................. TAAAGTGAGCCGCACCCCATATCAGAGCGATCATG 2577 30 100.0 36 .............................. GCTTAAGCAGGCCGGGTAGCCGTCAGCTTGCGCCCG 2511 30 100.0 39 .............................. ACCAGTTTTACAGCGAAGACACCAGCGAGTGGATTACAG 2442 30 100.0 36 .............................. TTTCCGTGCGACATACTTGTGTCAGTGTTTAGCATC 2376 30 100.0 37 .............................. TGACTTCCTTATCTGGTCCATTATTCCTATTTTTTCC 2309 30 100.0 38 .............................. CCAATTCCGCTGGCCCGGCGTCAAGGGCGAAAGGAGGA 2241 30 100.0 36 .............................. GGCTTTCCGGCGTTGCGCCCAGGAGCAATGGCGCGG 2175 30 100.0 37 .............................. CCACATCCCTGGGGCTAATCCGGGCCTCTCGCAGAAT 2108 30 100.0 37 .............................. AATAACCGGTATTATTTGCACCAGTTCGACAACACCG 2041 30 100.0 37 .............................. TTTCCAAAGTGGCGGGCGCATTCCTGCCGTTATTCCA 1974 30 100.0 36 .............................. GATTGAAGGCAGTGTTTCCCTGAATAATACTGCCGC 1908 30 100.0 37 .............................. TGGTGTAGGCATACCGGCCCAGGGCCGATATTTCCAG 1841 30 100.0 36 .............................. CAGCCCAGTCATAGGCGTTTTCATCAATAATGAAAT 1775 30 100.0 34 .............................. CGTTTTAAGACGTACCAAGATGCCGGCGGTACTC 1711 30 100.0 35 .............................. ACCACCTGGCCCTGGGCGACCGCTGGTGCAAAGTT 1646 30 100.0 37 .............................. AGGCAAGGGAAAGCCAGGTGGCACCGGCAAAGAGGGC 1579 30 100.0 36 .............................. TTACAAAGGTGCGTCGATAATGAAGTCTGCCTTTGC 1513 30 100.0 37 .............................. ATGGAGCCGTGACCCAGGTGAAGGTCCTGGGGGCCGC 1446 30 100.0 32 .............................. AGGACCTTGCGGTCCTTGCATCACTGGGGCTG 1384 30 100.0 36 .............................. TGGCCAGGAATTTGAGGACCTTTTGCGCCGCAATCG 1318 30 100.0 38 .............................. ATGAGAAGCTGATCTTTGAGTTTGAGGACCCGGTGCCG 1250 30 100.0 36 .............................. TTTTAACGACGCCCTGGCTCACATCCGAGTGAAGGG 1184 30 100.0 35 .............................. GGGATTGATTGGGTTATCATCGGAGCACAAACAGG 1119 30 100.0 36 .............................. CTTTTGAATGGCGCCTGGGCTCTAAACTTCGCAAGG 1053 30 100.0 36 .............................. GCTTCCTTCAGGAGCCTGCCTGCCAGATCGTCCTCG 987 30 100.0 39 .............................. GACGACAATGCCGGGGTCCTTCGCCTGCCACAGCCGGTA 918 30 100.0 36 .............................. TCAACTGCCGGTGTGCGCTGTTGCCGGTCATTGAAG 852 30 100.0 36 .............................. CCTCATTGATGCCGGCGCCACCCACCTCATCACCCG 786 30 100.0 35 .............................. GCAGCGGCCAATGCCGGCGGAGGGCGGCCTGTTCA 721 30 100.0 36 .............................. TTGACTTCTTTGGTGGTTCGGGCACCACCTTGATTG 655 30 100.0 35 .............................. CAAGCAAGGCGACCAGGATACACTGGTCTTTACCA 590 30 100.0 37 .............................. TGGAGTCCAGGCGGTATATCCGTGACGTGGCCATGCA 523 30 100.0 36 .............................. AGGCCTGCAAAGACTGGGGGGTGGCCGGGGACGAAG 457 30 100.0 36 .............................. AATTAAAGAAAAATACATTGTTAACGCTTTATATGG 391 30 100.0 36 .............................. CCAGAACCCGGCAATATTTGGCGGGCGCAACATTCA 325 30 100.0 36 .............................. CCCAGCCCAGCACAGGCTGGTTTTTCTTTTGTCTCC 259 30 100.0 36 .............................. GTCTCCCAGACGCTTTCCTCCCCGAAGAGATCTTCC 193 30 100.0 36 .............................. GTGAACTCGGTTGGTTCAGACTCCGGCAAGTAGCCG 127 30 100.0 38 .............................. TCTATACTGGATCTGATGTATTGTCTAATCCTGCTTGG 59 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 96 30 100.0 36 GTGCGAAGCCTACCTATGAGGAATTGAAAC # Left flank : GCCGCCCCGTCGGTGGTATTGATTAACCACGTGCGGGGTGGCAGTCAAGGCCGCCGCCCTGAATTGAAATTCGCTAAAATCGTGAGCAAGAAGGACTAATTGTCCAATCTTAGGGGGTCAGCCCGTGTGGCCAACGGG # Right flank : CTCTATACTGGATCTGATGTATTGTCTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 161-521 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000127.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_127_length_690_cov_87.2806, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 161 30 100.0 37 .............................. ATAGTCCATGATAACCTGGCTAATTCCGCCAATTCCG 228 30 100.0 36 .............................. TACATCCTTTCCACCAGCCGGGCCATTTCACTCTTC 294 30 100.0 37 .............................. AAACAACGTCCATATCCGCTTTTCCTTCTTTGGTTCC 361 30 100.0 35 .............................. CGCATACCTCCTTATGAGGGTCTGAATCTGGGGCC 426 30 100.0 36 .............................. CTTGCTATCAGGATAGCACGGCCCAGGGCGGCCGTC 492 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 36 GTTATTAGCCTACCTATGAGGAATTGAAAC # Left flank : TCGCTGGCCTGTTAACCATGGAGAAGAAGGTGCTGTTCAGAATATTCAATACTTAAGAGTATATATCAACAAGATTACAGAAATTACAAGTTGACTTTCGTGCTAAAAATTTAATGCAACACTAGTGTATTCTTCTATAACCTGTTGCGCCCCCTGCGTAG # Right flank : CAACCTGTGTTACTAACACTGGGGCGTCTTTTATTGGTTATTAGCCTCTCTCAGTAAGGTTGTAATATCTCCATTTATCTTGCGATATCAGCCAATTTCACTTTTTCTCAGGGAGATGAATGATAATAATAACCAGGTATACCGATATATGGCATGTGTTATCCATACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 177-3215 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000095.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_95_length_3244_cov_97.9368, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 177 30 100.0 35 .............................. TCCTTTGGGAGATATCTAGCTAGCTTGCTATTAGG 242 30 100.0 34 .............................. TAGCCCGCGTGAGGAGTTCACCCATCCCTGTTTC 306 30 100.0 35 .............................. GCTGATTGCCGCAGGGTCTCTTTGCCCTCGTTATA 371 30 100.0 38 .............................. CCGGTTCTACCACCCGGACCGGCCCCACCCGTGGATAA 439 30 100.0 35 .............................. GCTGATTGCCGCAGGGTCTCTTTGCCCTCGTTATA 504 30 100.0 39 .............................. CCAGGAGCCTTGACAGGGCCTGTGAAACTTCCTTGTTAG 573 30 100.0 37 .............................. GAGGACCGGCACGGTATGGGGAAATTTTTGTGAAGTT 640 30 100.0 39 .............................. GGGTCAATTTAATGCAAAAACATTGCAGTTTTTGTTCAT 709 30 100.0 39 .............................. CGCATACGCTGAGGCCGTTTCGTAAGTATCAAAAACTTA 778 30 100.0 36 .............................. ACAAATAGAGAAATAACATGCTTTTCGCTTGACAAA 844 30 100.0 37 .............................. TCCGGATGATCCGGATCCTGGACTGAGTGACCTCGGG 911 30 100.0 35 .............................. GCCCTGTGTCCATGTGAACAAACAAAGTTGTATGT 976 30 100.0 36 .............................. CCATAAATGGCCTGGAAGGGCAGGATGATATGTTGC 1042 30 100.0 38 .............................. AATCATATCTTGAAAATATGGCTAAGTCCACTTTAGAA 1110 30 100.0 34 .............................. AATACCCCATCTGATTTTAAAAGATATGTTATAA 1174 30 100.0 36 .............................. CCCAATGGAACATAACATACAACTTTGTTTGTTCAC 1240 30 100.0 35 .............................. TTCACACCAGCCACGGCCACTGTATGGCTGCCCGC 1305 30 100.0 38 .............................. TCGTCCACGAACTGGACCGCCTGGCCAGGTCGATGCTG 1373 30 100.0 37 .............................. TTTTCTCTATGTACCTGGACCAGAACCTGGGCCTGCG 1440 30 100.0 35 .............................. CAAACACCATGGCCAGCATTTGGCCCATCATTGCA 1505 30 100.0 35 .............................. ACAAACAGCCCGGGCGGGGTGATATCCTTTGCCAT 1570 30 100.0 39 .............................. CTTGGTTCGGTTCGGTTCGCCTCCGATCGCCACCGCTTG 1639 30 100.0 38 .............................. CTGACAGCCGAGCGCAAATATAAAAAAGGAAATGACGC 1707 30 100.0 37 .............................. ATATCGCTTCCCCTCTAAGGGGAACGACCCTTAAACC 1774 30 100.0 38 .............................. TTGCAAGGGTATTTGGCACTATGCGGTACGCCTCGCAC 1842 30 100.0 39 .............................. AGGGGGAAAAGGTGGTTACCAGGAAGTTTTTTGACGAAT 1911 30 100.0 37 .............................. ATGATAAAGTTCGCTAACTCTGTGATGTAGTTGTTCC 1978 30 100.0 37 .............................. CGGACCGGGTACGAATCCTACGTCATCCCAGGGGCTA 2045 30 100.0 36 .............................. GGCGGTGACCGAGCTAATCAAGGAAAGTCAACAGGC 2111 30 100.0 37 .............................. GTAAAACGTGGATGAAGAAAAACAGCGGAACTTTGCC 2178 30 100.0 36 .............................. TCTAATGGGGCTAGTCAAGGCATTGGACTTCATAAC 2244 30 100.0 36 .............................. GACACCCTGTCCTCCACCATGGGCCAGTTCATGACC 2310 30 100.0 37 .............................. TGCGGTTGCGCCAGGTACAACCGGCGGCCCAGAAACG 2377 30 100.0 35 .............................. ACGACCGGGCAAAGTGGGCACTGGAAGCCCTGGAA 2442 30 100.0 38 .............................. AACGGTGCAGCAGGTGGACATTGACTTTGCCGGTAACG 2510 30 100.0 38 .............................. ATTATCCGGTCCACTTCCGCCGGGCTTTTGCTCCGCAG 2578 30 100.0 36 .............................. TACTTAAAAACGGTAGTAATATGTTTTATTCTGCCT 2644 30 100.0 37 .............................. TTTTTTGAAGCCCAGCGCAAAGTGCATGATAAGACTT 2711 30 100.0 40 .............................. CGGAGATCAAGAAATTAAACCCTAGCGAAGTTGTTATCCT 2781 30 100.0 37 .............................. TGGATTAATTCTTACAAAAAACATCTAAATATTTTTG 2848 30 100.0 40 .............................. CGGAGATCAAGAAATTAAACCCTAGCGAAGTTGTTATCCT 2918 30 100.0 36 .............................. TTATTATATTGCATTTATCTTTTTGCTTATGTTATT 2984 30 100.0 37 .............................. TGTCCTGCGATGTAAGGACGTATACTCATAAGCAGGA 3051 30 100.0 37 .............................. TCCATCCAAAGCACTTGTGATAACCCCGAAACAACAC 3118 30 100.0 38 .............................. TCTATACTGGATCTGATGTATTGTCTAATCCTGCTTGG 3186 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 46 30 100.0 37 GTGCGAAGCCTACCTATGAGGAATTGAAAC # Left flank : GCCGCCCCGTCGGTGGTATTGATTAACCACGTGCGGGGTGGCAGTCAAGGCCGCCGCCCTGAATTGAAATTCGCTAAAATCGTGAGCAAGAAGGACTAATTGTCCAATCTTAGGGGGTCAGCCCGTGAGGAATTGAAACTGGATTAATTCTTACAAAAAACATCTAAATATTTTTGG # Right flank : TCTATACTGGATCTGATGTATTGTCTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGAAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 3938-3225 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHYR01000018.1 Desulfofundulus thermobenzoicus strain DSM 14055 NODE_18_length_65641_cov_72.8696, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3937 36 100.0 39 .................................... AACCACTGTTCTAGAGACATTTTTGGATTAGGCATGTTC 3862 36 100.0 40 .................................... ATGTCATGCCCTGATTTTCGCGGGCCAACCGTATCCGCGG 3786 36 100.0 39 .................................... TTTAAGTCTCCTGCGAGGCTTGTATTCCAAAACGTATCG 3711 36 100.0 38 .................................... AGGAAGCCATCAGGGACGCAAAGGCCGGCCTGTTTAAC 3637 36 100.0 40 .................................... AATACACATGGCTGAAGGCGGAGAGTTTCACCAAGGGAAT 3561 36 100.0 38 .................................... ATTCTCTGACTGTCGTCTTTATGTTTCTTGGACAACTT 3487 36 100.0 38 .................................... TAATCATACACCCTCCTAAACCTGCCCGTGCAGGCCGC 3413 36 100.0 41 .................................... AGATATTCCTTCTGCTTCAACCAATCCACCCACTGTTCCAA 3336 36 100.0 40 .................................... AAATACTTTTTAAACAGGTGCGTACTCTTTCCAAAGACAC 3260 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 100.0 39 GTAACCAAACCGCTAATTCCCCATGGGAATTGAAAC # Left flank : TAATTGCCTACGATATCCGGGACGACCGGCGACGGCTAAAAATATATAAAACCCTCAAGGATTATGCCATACCCGTCCAATATAGTGTTTTCGAATGCAGCCTGCGCCGGGAGGATTATCTTATATTGCGTTTTAAGCTGGAGAAACTGATACGTAAAGAAGAAGACAGCATCGTTTTTTACCGGCAGTGCCCCCGCTGTTCCGGCCGGGTGGAGCGCCTGGGCACTTCTCGGGATCCCTTCGGCGATGGTATTTTTATAATTTCCAGCGGCGAGGATTAACGTTGTACAAATAAGCCCGGGGAAGCTCGCGGGAGAGGGAACCCGGGGGAGGAAAGGAAAAAGGCTGTTAAATGGGGCATAGGGAGTATAATCCATCTGTCAGGTGAACGTTCTAATGTTTTTTTGCCCGTTGTTGATGAAGCATTTACCACAACGGAGCGGGGTTCTCGAAAACGGTTCCTGAAGCGCCCATGTATTAAGGCCTCCCGATTGGCGCGG # Right flank : CGGCAGACGGCCGCCGTGGCAACCATCAACCTTATGTCGTCACCAAACCGCTAATTCCCCAACCCACAGGCCCTGACCCTGAGGCTGGAAATGGTAATTACTGAGGAAATGCGCCGGGCGGGAAAGCTGGACGGGTCAATGGACCGGACCAGCAGGGAAGAATTTTCTAAATCTTTATCAGGCCAGTATAAAAATAATTACAATAATAATTCACCCTTGGGCAGGCTTTACAGCCGGTTGTTTAATTTCTGGAATACCGCCCAAAACGGCGGCCGGGCGGCCGCCCGGCCACTTCGGGCTAACCGCAAAGTATTGTGTTCCGGTGCTTTAGCCGGTAACTGTCGCCGGTCATGTTAAATAATTCCAGTTCTTTGTATTCATTCCCGATGTTTGTGTGGGACGCACGTACCAGGCCAACCCGCCGGGCCAGTTCGGACTGGGTCAGACCCACCTGGAACCTGGCCTTGAGCAAAGAAGCACGCATCCGCCACCTCCTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACCAAACCGCTAATTCCCCATGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //