Array 1 12772-11108 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHO01000020.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45954 N45954_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12771 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 12710 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 12649 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 12588 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 12521 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 12460 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 12399 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 12338 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 12277 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 12216 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 12155 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 12094 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 12033 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 11972 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 11911 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 11850 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 11789 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 11728 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 11667 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 11564 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 11503 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 11442 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 11381 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 11320 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 11259 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 11198 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11137 29 96.6 0 A............................ | A [11110] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30033-29029 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHHO01000020.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N45954 N45954_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30032 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 29971 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 29910 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 29849 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 29788 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 29727 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 29666 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 29605 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29544 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 29483 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 29422 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29361 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29300 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 29239 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 29178 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 29117 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 29056 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //