Array 1 520-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIE01000259.1 Oceanidesulfovibrio indonesiensis strain P37SLT P37SLT_259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 519 32 93.8 33 ..........T..................G.. ATGTCGGCATCGCGCCGGGAGGATGCATGAATT 454 32 100.0 34 ................................ TCGCTCGAAATGACCTCGGACGCCCTGATTAACC 388 32 100.0 35 ................................ TCTAGGCCTCCACCTGCTCCGGCTCGACCATCTCA 321 32 96.9 32 ..............A................. TAGGCATCCAATGCAAGGCGCTTAAGCGTGGA 257 32 90.6 34 A......G......................G. ATGCGCATTGCAGGTCGGTGTCATCGAGCGGGCT 191 32 90.6 34 ....A.......................GC.. TGGGAGTGGGCCGAATCGTGGGCTGTGGGCATCC 125 32 100.0 35 ................................ TCTTCAATTCTGACAACGTGTTAATGCCCACTGTT 58 32 96.9 0 ........................C....... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.1 34 GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAC # Left flank : TCATGCCGCAA # Right flank : CCCAGCTTACCGTGACCTTGCTGTTCT # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [20.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 506-361 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIE01000318.1 Oceanidesulfovibrio indonesiensis strain P37SLT P37SLT_318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 505 23 79.3 32 ------....................... TCGAGGCTGACCACCGGGTTGTTCACGGTTTT 450 29 100.0 32 ............................. GCGGACGGCCCGCCATGCGGTGATTGCAGGCC 389 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 GTGTTCCCCGCGCCCGCGGGGATGATCCG # Left flank : | # Right flank : CATTTCGGACTTGATCTCCCAAGCCCATTCCTCGGCATGCGCCTTGGTTTCAAAGGTCTTGCAGGTAACAGGATAGCCGAGCTTTCGGATCCGGGCTTCCCATTGAATGAGACCGCGCTTCCGGATCTCCGCCATAGCTCCTTCTCGCTCCAGGAAAATAGTGGAGCGAAGAGGAGCAAGATTCGAGCAAATGTCAGGGTTGGCGAAGAGTGTCTTGGAGTGAGCCTGGCCAAGTGGCCGACATTCGTGGTTCCGGGGCCGTGAGTCGAACCCGCACGCTGTTACCAGAATTGCATTTTGGGTCAGTCGCGTCTACAAATTTCACCACCCGGGAAGGGGAAGAAGTGATATCTACGGGGAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 161169-162052 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIE01000009.1 Oceanidesulfovibrio indonesiensis strain P37SLT P37SLT_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 161169 29 100.0 32 ............................. TCGCAGGGCTACATCCTCGCCAGTGCTGAGAC 161230 29 100.0 32 ............................. TTTTCGAGCTTGAGCTGCATCAGTTTCATCGC 161291 29 100.0 32 ............................. TCGCAGGGGGCGGCGCCCGAAAACAAGGCGAA 161352 29 100.0 32 ............................. GAAAACCGTATCCGTCAGTCGTTCCACGGGCG 161413 29 100.0 32 ............................. TCGAGTTTGACGAGTGGCGATTCTCCCGCGAG 161474 29 100.0 32 ............................. CCGACTGAAAATATGTCCAAGGCCATCAAGGC 161535 29 100.0 32 ............................. CCGTGGCGCTGGCCATGAAAGATGCACTCGGC 161596 29 100.0 32 ............................. CCGTCATGAACGCCATGGCCATGACGTACAGC 161657 29 100.0 32 ............................. CCGCCGTCTTTGAGGTAGATGCCGCCGCACTC 161718 29 100.0 32 ............................. GGGGCCGCCTGATGTGGAGTGGCGTCAGGAGC 161779 29 100.0 33 ............................. CGACGCCTTTGATGCCTTCGGAGACGCCGCGAA 161841 29 100.0 32 ............................. TCATCAATGATCGAGCGGACCGAACGGGCCAC 161902 29 100.0 32 ............................. AGCGGCTGAACATGGAGCTTGCCGCGCTCGAT 161963 29 100.0 32 ............................. GCTCCCCTGGCTCGCAGACCTCCGCTGGGGTT 162024 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCCGCGGGGATGATCCG # Left flank : CTCAAGCGCATCATTCCCACCATCGAAGAAGTTCTTGCCGCTGGCGAGAAACAACCGCCGCAGGCCTATGACGACGCCATAGGACCGGCGTTCAAGGACGAGGAGGGCATAGGCGATGATGGTCATCGTTCTTGAGAACGCGCCGCCCCGGCTGCGCGGCAGGTTGGCCGTGTGGCTGCTGGAGGTGCGCGCCGGCGTCTTTGTGGGCAATTACTCGCGCAAGGTGCGTGAGATGATATGGGACCAGGTTGCCGGCAACCTGGAAGAGGGCAATGCCGTAATGGCCTGGGCCAGCCGCGATGAGGGCGGCTTTTCCTTCGAGACGTTGGGGGAGAACCGCCGCATTCCGTGCGAGATGGATGGTCTGCGCCTGGTGAGCTTCCTGCCGCTTCCGGATGAGGACGAGCAGGGAGAGTGCGAAGTCGATAACGACTGATCGATTTCGGTACGCTGAATCTGTTCCTTGAAAGATGAATAGTGTTAGTGTATTGTGCGTTAGA # Right flank : AGCCTTGGCTCGCACTTGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99317-94552 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIE01000017.1 Oceanidesulfovibrio indonesiensis strain P37SLT P37SLT_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 99316 29 100.0 32 ............................. CCCCTGCCAGGACCTCTCAGTTGCCGGACGGC 99255 29 100.0 32 ............................. AGCATCCCCCTCGCGCAATTGGAAAACGGCGT 99194 29 100.0 32 ............................. CCTCAGCCGATCAGTGCGAACTCATGTGCTGG 99133 29 100.0 32 ............................. AGGGGGGTTGAGATGCCAGCCAAATGGAGGCG 99072 29 100.0 67 ............................. TCGTAGACTTTTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCC 98976 29 100.0 32 ............................. GAGCCCTTCGCCATCTCGACTTCATCGCAGGC 98915 29 100.0 32 ............................. ATTTCCACGAACGCCTCACGCAGCAGACGGGC 98854 29 100.0 32 ............................. CGGGCGATGGTGTTGGCGAACCGCTCGTCCCG 98793 29 100.0 32 ............................. GACTGCTACGCTATGAAGGCATGGCGTATGTA 98732 29 100.0 33 ............................. CGCCTTGTTCCGTGGTTGTTTGATGTTCAAATC 98670 29 100.0 32 ............................. GCAAGCCGTACAGGCAGCATCCCGCGATCATT 98609 29 100.0 32 ............................. CAACGAGGCTTTGGACTGCAAAGCATACAGCT 98548 29 100.0 32 ............................. TCCGGGATATCCCCGGCAACATGCCACCGGAA 98487 29 100.0 32 ............................. GATACAATCGGGCTAGTGTATCGCTTTCGTAG 98426 29 100.0 32 ............................. TTCGAGGCCGATGCGCGGCGCCATGCCGAGAG 98365 29 100.0 32 ............................. GCGGGTGGAACTGTGAGTGTGGGCGCTGGTGA 98304 29 100.0 32 ............................. ACATCACCCCATTCTTCAGACCTCCTCGACGC 98243 29 100.0 32 ............................. GCCGCAAAACCCGAAAAGGACACGCCCTCCGG 98182 29 100.0 32 ............................. GATATGGTCGCCCGTTTCGACGCAGGGGTGAC 98121 29 100.0 32 ............................. CGCTTCCCACATCAAGCTCGTGTCGGATGGTG 98060 29 100.0 32 ............................. AAAGTTCCGTGCTGGTCTGCCCCCGCTCCTCA 97999 29 100.0 32 ............................. GTCACGCTCAAGGAAAGCGTCACCTGGGACCA 97938 29 100.0 32 ............................. ACAACAGTCCCCAGGCGGCCCAGCAGCGCCGC 97877 29 100.0 32 ............................. GTCCGGGGGGAAGTCACAGCCGCAGAGCGTCT 97816 29 93.1 33 ..........................G.A GGCCATGGAGGTATTCCGGCCTGCCTGGCTCCT 97754 29 100.0 32 ............................. CGCTGGCCCATGCCTCACGAAATCTACATCGG 97693 29 100.0 32 ............................. AGCACAAAGAGACGCCGGCGCTACGGTTCGGA 97632 29 100.0 32 ............................. GCGCTTGTGGATGTAGTCAAGCCCGCGCTGGG 97571 29 100.0 32 ............................. TCGCATCTGGACCGCTGCGGCAAATGCCAGAC 97510 29 100.0 32 ............................. CCGACCCACAGTTGACACATCCGATAAACGTG 97449 29 100.0 32 ............................. TCGAGGATCTTCTTTTCCCGGTTCAGGATGGT 97388 29 100.0 32 ............................. CTGGCACGCGAGGGGATTGAAAAGCTCGTCGA 97327 29 100.0 32 ............................. CCATGGGCCACGTCCTGGCAGAGGGCTCGCCG 97266 29 100.0 32 ............................. ACCGCCGGACAGGCCCTGGACAAAGTCGAGGT 97205 29 100.0 32 ............................. AACATCTACCTGCGCACGGTCGCGTAGGCTGA 97144 29 100.0 32 ............................. AAGAGGCCAGGAAGGAAATCAAAGATCTCGTC 97083 29 100.0 32 ............................. GATGTCGAGAAAGCTGTGATGCGCGTGATGGC 97022 29 100.0 32 ............................. GACGGCACGAAGCACGGCAAGGAGGTGATCGG 96961 29 100.0 32 ............................. TACAGCGTGGAGTTGTCCAGGATTAACCAGGA 96900 29 100.0 32 ............................. AACGAATATCTGTCCGTCGCCGAAACCGCCAA 96839 29 100.0 32 ............................. TCGTTGCCTGGCTTCGTCTCCGAGATGGTGGG 96778 29 100.0 32 ............................. ACGCGAGTCCGGAGGCATTTGCCCGGAGCGTG 96717 29 100.0 32 ............................. ACTCACTACGTTCGTCTTCTTGCGACGAGCTG 96656 29 100.0 32 ............................. AGGGCCGGCCCTGCGCTCGCCATATCAAGGAC 96595 29 100.0 32 ............................. CCAGCGACACGAGCGCGTCGTACTGCTCCTGG 96534 29 100.0 32 ............................. GGTATCAAGCCGATCTACGCCTACACCGGCAG 96473 29 96.6 32 ............................A TGCTGCTTCCCTATTTCCAGGAACAATGTACG 96412 29 100.0 32 ............................. CATCCCTTGGACTGGGCCGGTCGCTCAAGACC 96351 29 100.0 32 ............................. GAGCCTGTAAAACGTGCGGTACATGATGATTT 96290 29 100.0 32 ............................. GTTGCCGATGACGTCCCGGTTTGCCGGCAGGA 96229 29 100.0 32 ............................. CATGGCGCATACGTGACCCCTGCGACAGCCGA 96168 29 100.0 32 ............................. TCCGGCGCATCCTTCGCGAGATGGAACGGGAG 96107 29 100.0 33 ............................. ACACGACCTTCGCCATGCAGCAGACCCTGGTTC 96045 29 100.0 32 ............................. GAATGTCTAAGGAGAAATCTAATATGATCTGG 95984 29 100.0 32 ............................. CTACTGCGTGCATACGGGCCGGCTCAGACTGG 95923 29 100.0 32 ............................. CGCACAATCAGGGCAGGCGAAAGCCGACGAGG 95862 29 100.0 32 ............................. GAAACGCATTAAGACGTGGTATTCAGACGACA 95801 29 100.0 33 ............................. GCTTTCCAGCCGGCGCTGCCGCGCTGACCCAGA 95739 29 100.0 32 ............................. GTGTTCGACGAGGCCGACGGCGACGAGGGCCG 95678 29 100.0 32 ............................. GTCATCCGCGGCGGCCTGGCAAAAAACAACTT 95617 29 100.0 32 ............................. GTCTTGTGCTCACCGACGACAGCGACGCTGAG 95556 29 100.0 32 ............................. CCGCGTATGGGCATGCGCACGCGCACGGGCAG 95495 29 100.0 32 ............................. CTTTGCTACTGCTCCAGGTTTAATGCCTAAAA 95434 29 100.0 32 ............................. GTGCGGATACATGCCGGGCCGGTGCCGCTGAG 95373 29 100.0 32 ............................. AGGTCTTGTTATGGCTGGTCGTAAACCCCTCC 95312 29 100.0 32 ............................. ACGCGAGTCCGGAGGCATTTGCCCGGAGCGTG 95251 29 100.0 32 ............................. ACTCACTACGTTCGTCTTCTTGCGACGAGCTG 95190 29 100.0 32 ............................. AGGGCCGGCCCTGCGCTCGCCATATCAAGGAC 95129 29 100.0 32 ............................. CATGGCGCATACGTGACCCCTGCGACAGCCGA 95068 29 100.0 32 ............................. TCGTTGCCTGGCTTCGTCTCCGAGATGGTGGG 95007 29 100.0 32 ............................. AGCTCGTAATATTTGCGCTCCCACTCCAGCGC 94946 29 100.0 32 ............................. GGGTTGTGTAATGCCATTTAGCAAACCGGTCG 94885 29 100.0 32 ............................. CATGCACCGGGGTGCGCGCATGGAACTCAGGC 94824 29 100.0 32 ............................. CGAGTTACGCGATGTGGATGTCGCGGACTACC 94763 29 100.0 32 ............................. GGACAGCATCCCGCGATCGTTGACAATCGAAT 94702 29 100.0 32 ............................. TCGAGGCTGACCACCGGGTTGTTCACGGTTTT 94641 29 100.0 32 ............................. GCGGACGGCCCGCCATGCGGTGATTGCAGGCC 94580 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= =================================================================== ================== 78 29 99.8 33 GTGTTCCCCGCGCCCGCGGGGATGATCCG # Left flank : CCCTCCGG # Right flank : ATTTCGGACTTGATCTCCCAAGCCCATTCCTCGGCACGCGCCTTGGTTTCAAACGTCTTGCAGGTAACAGGATAGCCGCGCTTTCGGATACGGGCTTCCCATTGACTGAGACCGCGCTTCCGGATCGACGACATAGCTCCTTCTCGCTCAAGGAAAATACTGGAGCGAGAAGGAGCAAGATTGGAGCAAATGGCAAGGTTGGCGAGGAGTGTCTTGGAGTGAGACTTGCCAAGTTGCCGAAATTCTTGGTGCCGGGGGCGGGAGTCGAACCCGCACTCTGTTGCCAGAAACGGATTTTGAGTCCGTCGCGTCTACCAATTTCACCACCCCGGCAGGGGAAGAAGTGATATCTACGAGGACCGGCGATGCGTGTCAATAGCCGGTTCAGTTGAAAAATCACTTCGCATGCTTCAAAACTTTTTTCGCCCACTGTGCTGCCGCGTAGCAGAAAGTAGCAGTGTCTCCAGGCTTCGGCGCAGATTGGGACATCCTGTCTTCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20900-27497 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMIE01000024.1 Oceanidesulfovibrio indonesiensis strain P37SLT P37SLT_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20900 32 100.0 33 ................................ GCAAGGCGTGGATGTTCTCAGGGTCATCTCGTC 20965 32 100.0 34 ................................ CAGGGCGTCGCGGGCGGCCATGTAGCCGCCCTCC 21031 32 100.0 32 ................................ ACGAGTTCCCGCAGCGGGACTCCGGATTCTGG 21095 32 100.0 34 ................................ GGGGTGGACACGGCCATGCCCGGCGGCAGGTTGT 21161 32 100.0 34 ................................ CCAGTCCCCAGGCCAGCGGGCAAAAAACCCATCA 21227 32 100.0 35 ................................ TCCACCACCTCGGGGGCGGTCTCGAAGGCGCGGGT 21294 32 100.0 34 ................................ CTCGCCATCAAAGTAGTTGAGGCGCACGTCGATG 21360 32 100.0 35 ................................ CGAGCCGATGGGCCGCGAAGTCAACCTGGTCCCAT 21427 32 100.0 33 ................................ ACATACACGAACGGGTCCTAGCACCACGGTAGA 21492 32 100.0 34 ................................ CTTTTCTGAAAGAGAGTCTCGGAAACCTGTGATT 21558 32 100.0 33 ................................ GCCTCCGGCGGCCAAAGGATCACCGATCCTTTG 21623 32 100.0 36 ................................ GCGCCAACGACAAGCGCATATACCCGCGGCCCGGCA 21691 32 100.0 34 ................................ ACCGAACACGATGTGCTTAAGGAGTTCGAGGAGC 21757 32 100.0 33 ................................ GGCGGCAACAACACGTCCGGGCCGATTGATGTG 21822 32 100.0 33 ................................ CCGACGCCAGGAAATTGATGGGGAGGGGGCATG 21887 32 100.0 32 ................................ AGACCGCGGCCATGTGCGTGCGGGTGGCGGTG 21951 32 100.0 33 ................................ ATCGTCATCGGCGCACGGCCATCATGCGGCAAG 22016 32 100.0 33 ................................ ATGTCGGCATCGCGCCGGGAGGATGCATGAATT 22081 32 100.0 34 ................................ TCGCTCGAAATGACCTCGGACGCCCTGATTAACC 22147 32 100.0 35 ................................ TCTAGGCCTCCACCTGCTCCGGCTCGACCATCTCA 22214 32 100.0 32 ................................ TAGGCATCCAATCCAAGGCGCTTAAGCGTGGC 22278 32 100.0 34 ................................ ATGCCCATTGCAGCTCGGTGTCATCGAGCGGGCT 22344 32 100.0 34 ................................ TGGGAGTGGGTCGCATCGTGGGCTGTGTGCATCC 22410 32 100.0 35 ................................ TCTTCAATTCTGACAACGTGTTAATGCCCACTGTT 22477 32 100.0 34 ................................ CCCGCTTACCGTGAACGTGCTGTTCTACGCCAAG 22543 32 100.0 34 ................................ AAGAGCACCCACGCATAGGCAAGCGTTTTCTCCA 22609 32 100.0 33 ................................ AGAATACCCCTTGGTTGCAATGTTACCCATGAC 22674 32 100.0 33 ................................ TCTGCCGGGTTCCAGAACGAACATACCCGGTAT 22739 32 100.0 33 ................................ GGCTCACTCGACAGCGACAACCTGCTGGCACGG 22804 32 100.0 33 ................................ ACATAAACATAACCACTGGCTAACAATCTAGGA 22869 32 100.0 32 ................................ AGCCCGGATAAAGGGATGTGGCATAGGGCACA 22933 32 100.0 32 ................................ ACTGCTGACTACGCTCTAGACGGCTGAAGTGT 22997 32 100.0 33 ................................ ACATCCCGTGAGGAGGACGAGGTTGACATTGAG 23062 32 100.0 32 ................................ ACGTCCCAGGAAGAGATCGTCGCAGCCATGAA 23126 32 100.0 32 ................................ TTCCAGAATCAAGAACCATGCCAAGGCAATAA 23190 32 100.0 33 ................................ CTTGGCGCATGCCGCGTTGAATATTGACGCCTC 23255 32 100.0 33 ................................ GTAGTCGGTGTGGCACCAGACCACCGCACACTC 23320 32 100.0 35 ................................ GTGGAACAGGCGGGTGCGGTCCTTGCTGGCGGTGG 23387 32 100.0 34 ................................ GCTGCACCCGCACACGCTGCATGTATGGGCGCGT 23453 32 100.0 34 ................................ GCCGGCCTCGATGGACCCGCCGGCCCTGATGGAC 23519 32 100.0 35 ................................ CGCGCCGAGCCGCGCCAGCCGCAGCAGGTCGCGTC 23586 32 100.0 34 ................................ CTCGGCGGGTACGGGGGCGGCGACACCATCCGCG 23652 32 100.0 34 ................................ TCGGAGCCTGTGGTGCGGCGCGGGGATGGTTAAA 23718 32 100.0 34 ................................ TGGATGTGCTTGAAGACGGCACATACGCCATACA 23784 32 100.0 36 ................................ AAAATATTGGCGGAGATGTACGGCAGCCATAGCGCC 23852 32 100.0 34 ................................ CGCCCTTGACGTGGCGACCACAGTAGGCCCACCA 23918 32 100.0 32 ................................ ATGCGGCAAAAGCATCCCCCGTGCACAGTTGG 23982 32 100.0 33 ................................ AGGTTATTGATTGCGTCGATTCGCTCTTGGGTA 24047 32 100.0 34 ................................ ATGGACGAAACAATTAAAAACGATAAGTGACCCA 24113 32 100.0 33 ................................ CATAGCTCCCAGCCGGCGGTGGAGGTCGCACCT 24178 32 100.0 35 ................................ TTGTCCTTGGTCTGCACGTCTTGCAGCTTGAGAAA 24245 32 100.0 35 ................................ GTGTTGTTGGTGGGTGACGTTGGCCACCGGGGAAA 24312 32 100.0 35 ................................ AGATTCGGAATATCCAGGTCCGGCAGCGCGTAGTT 24379 32 100.0 34 ................................ TCCTTCTTCTGCTCATCAGCGACGTCTTCATAGA 24445 32 100.0 32 ................................ CGGTCCCATGTACATCCGAAGTTACGAATTTG 24509 32 100.0 33 ................................ TCGTCAGCCTGAATGAACCCGATGCCCTGAACC 24574 32 100.0 35 ................................ ACGCTCCGGCAGTTTCAGCGATCCGCTGCGCAGCC 24641 32 100.0 34 ................................ GGGTTGCGGCTGATTGGCCAGGTCTGCGGGCAGC 24707 32 100.0 33 ................................ GTGCCACATCTACGCGGTATATGACGAGGGGAC 24772 32 96.9 34 .........T...................... CAGGGCGGCGCGTCCGTGCTTGGTCTTGGAGCGA 24838 32 96.9 34 .........T...................... TGTAATAATTAACCGACGCCCACCAGCTTGCCAA 24904 32 96.9 34 .........T...................... CAGGGCGGCGCGTCCGTGCTTGGTCTTGGAGCGA 24970 32 96.9 32 .........T...................... AACCAGGTGAGCCCATGTCCACGATATACAAC 25034 32 96.9 34 .........T...................... TGTAATAATTAACCGACGCCCACCAGCTTGCCAA 25100 32 96.9 34 .........T...................... AGGTCAGAGGCGGTGCGGAGCACGGTGGTGCCGC 25166 32 96.9 34 .........T...................... CCAGCTGACCGCCCGATTCGCGGAGCTCGACACG 25232 32 96.9 34 .........T...................... GCCCGGAATGGAGCCCGTGACGCTGACCCGTGAG 25298 32 96.9 33 .........T...................... TGGCACAGAACGCTGTTTTGACTAACAACGGCA 25363 32 96.9 33 .........T...................... CGCCGGCGATGCTCACGCAGTCCGAGTTTATCC 25428 32 96.9 34 .........T...................... TGGGACCACGGACGCGGCGTGGACTCCGGGCGTG 25494 32 100.0 35 ................................ CACAGCCGTTCGCGCGCAATAGCGGTGTGCCGCCC 25561 32 100.0 33 ................................ GAGCCGGTTGTGCATAACCCTGGCGATGGTGCG 25626 32 100.0 33 ................................ TGGAGTCTGCTGGGAAAACAGCGACGCAATCGC 25691 32 100.0 33 ................................ GGGCACAGAACGCTGTTTTGACTAACAACGGCA 25756 32 96.9 33 .........T...................... CGCCGGCGATGCTCACGCAGTCCGAGTTTATCC 25821 32 96.9 34 .........T...................... TGGGACCACGGACGCGGCGTGGACTCCGGGCGTG 25887 32 100.0 35 ................................ CACAGCCGTTCGCGCGCAATAGCGGTGTGCCGCCC 25954 32 100.0 34 ................................ GAGTAGACCCAGACCCAACGCGCGGACCGCCTCC 26020 32 100.0 33 ................................ GAGCCGGTTGTGCATAACCCTGGCGATGGTGCG 26085 32 100.0 33 ................................ TGGAGTCTGCTGGGAAAACAGCGACGCAATCGC 26150 32 100.0 34 ................................ CAATGCACCATTCGGTGTGCTGCTTGGCCGGCCC 26216 32 100.0 32 ................................ TTGTCGTAGAGCCGGGAGCCGCGCTGCACGAT 26280 32 100.0 34 ................................ AGCTCGTCCAGGCTGTAGACGAAGACGTCGCTCA 26346 32 100.0 35 ................................ AGCTCGGTCTTGGGAATGCCATCGAGGATGGCGTC 26413 32 100.0 33 ................................ TGTTCGGGGTGGCCAACGGCGTGCTCGATCTGG 26478 32 100.0 34 ................................ AATGTCAGCAACCAGGCTGAATTAGGCAAAAAGC 26544 32 100.0 34 ................................ AAAACACTGCGGCTCGAAGAGGGTGAGGTGTTGG 26610 32 100.0 35 ................................ TGATAAGGGCCAAAAATGTAAACGGTCCTATCGTA 26677 32 100.0 35 ................................ TTATAGGCACGGGCAGCACTGTGCGTGCAGTCCCG 26744 32 100.0 34 ................................ GTAGTCGGTGTGGCACCAGACCACCGCGCAATCC 26810 32 100.0 34 ................................ CAGGACCGTGACCATCTCTGGAAGGCTGGCTGGA 26876 32 100.0 33 ................................ GGTTGCGGAGCAAGAGCGCCGACGTCTATGGCG 26941 32 100.0 33 ................................ ATCGCCCGGGCTCACAAGGTAGGTGTAGTCCGC 27006 32 100.0 33 ................................ GGCCCGGACCTCGCGCGGCGGTGGCGGTGGTAG 27071 32 100.0 35 ................................ ACCGCGTACGAGCAGATCAGCGGCCGGTCGCTGGC 27138 32 100.0 35 ................................ GCGGCGGCAATTTTGCAGACCTCCCCGGCGTGAGT C [27150] 27206 32 100.0 33 ................................ CGCAGGGCGAGCAGCCTGCCACAGTCTCCGATT 27271 32 100.0 34 ................................ CGCTTGGAGCGGACGACGAGACGGCGGCCGTCGC 27337 32 100.0 32 ................................ GCGCGTCGCGCGCGTTAGGAGCATGTGGCGGG 27401 32 96.9 33 .....................G.......... ACGGCCACGGTGGCCGGGGTGAGGCCGGCGATC 27466 32 93.8 0 ............................G..G | ========== ====== ====== ====== ================================ ==================================== ================== 101 32 99.5 34 GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAC # Left flank : ACGGCTATCCGCCCTTCATTTGGAGGTGATCCGTGCTGATGCTCGTGTCATACGATGTGGCCACGTCCGACGAGGGCGGCCCCAGGCGGCTGCGTAAAGTTGCCAAGCTCTGCGGCGACTACGGCCAGCGCGTTCAGTACTCCGTATTTGAATGCGACGTGGACCCCGCGCAATGGGCCACGCTTCGCGCCTCGCTGCTGGATGTCATCAACCCGGAAAAGGACAGCCTGAGATTTTACAACCTGGGGCGGGAGTGGAAACGCCGCGTGGAGCATGTGGGAGTGCGGGAACCGCCGCAACTGGACGAGCCACTGATAGTTTGAGCGCGAGAGGGAGGTGTCCGTAGAAAACCCGGAGTTGTCGCGCGCGATCAATATTGAATCATTACAGTATTTTGTTGGATCTGCGTTCTTTGACAGCCCGAGAGCGGGAAAGGAAGAGAACCAATTCGCGGAAACGTATTGGCAAAGCCGCGTGTCGTATGGAATGACAGCAGAACA # Right flank : GGGCTCTGCGACGAGTTCGACGGACTCGAATATGATCACCACCTGCCCCCCAACGGCCTGATAAATATAAAAAGCCGCACCCAGCGAAACTGGATGCGGCCTTGTTTACCTGCTTGTTCACAAACACCTATTGCCAAATTGGCCTTTCCACATCGTCCGGAAACTCAGCGACGACCATGCGGACATTCCGCACAGGGATGCGATACACGTGGATGCGCTGCACGCCACCGTCTATCAACGGAATCTCGGACGCGATGTGCTTGGCGTCCAACTTGAAATCCAGCCTGCCCCGAATGATCTCCTGGAATTCTTTAAAATTCTCCAGCCCATACGGGTTGACCATGATCTCGAGCCAGTTCTCATCATTCTGCTCGGAGGGTACGAAACCGATTCCAAAATCGAAGAGAAGTTTATCAAAATAATCTTTTGAAAACATTGAAATTGTCACTTTGTGGTTGTTGTTATAATTTGGCATTATTTTACGTCCTTCTAAGGTCTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //